Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005969.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21623 .. 24412

Gene Structure 2790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atggacttcgatgccggaattcccatgtcccgtgcttccgccgcgcctgtgaccgacgacgcctcctcactgtcaccgcaagatgcaatgtggcaaatgaatttgagatcaagtgaatcaatggaacctggaccctatcctgagcgagctggagagccagattgctcttattacatcagaacaggcctctgtagatttggggcaacatgtcgcttcaatcatcctcctaaccgaaagctggctattgccactgcaagaatgaagggggagttcccagaaagaattggacaacctgaatgccagtattacctgaagacaggaacttgcaagttcggagcgacatgcaagtttcatcatcctagagacaaggcaggaattgctggaagagttgccatgttccatcatcctagggagcgattaattcctgctccagattgtgttttgagtccaataggccttcctttgcgaccgggagaacctttgtgcatcttttattctcgttatggtatctgtaagtttggtccgagttgcaagtttgaccaccctatgggtatcttcacttataacctttctgcttcatcttcggctgagagccctgcgcggcgtttgttggggtcgacatcaggcaccacttcattaaatttatcatcagaaggtctagttgaagcaggatcaacaaagccaaggagactttcactatcagagcctaggcagatgccttctgcggatgaaaatattgacacagaggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010313 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016787 GO:0016788 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048027 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

250

Amino Acids

27.42

Weight (kDa)

8.03

Isoelectric Point (pI)

51.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	52 - 76	3.5e-08	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	97 - 121	2.5e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH	PF00642	157 - 183	7.9e-11	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	564
AccB1I	GGYRCC	1 cut(s)	626
AccB7I	CCANNNNNTGG	1 cut(s)	547
AccI	GTMKAC	1 cut(s)	617
AccII	CGCG	2 cut(s)	44, 601
AciI	CCGC	5 cut(s)	39, 42, 77, 601, 725
AclWI	GGATC	1 cut(s)	679
AcsI	RAATTY	3 cut(s)	18, 100, 640
AcuI	CTGAAG	1 cut(s)	332
AcyI	GRCGYC	1 cut(s)	60
AfiI	CCNNNNNNNGG	2 cut(s)	238, 547
AflIII	ACRYGT	1 cut(s)	206
AgsI	TTSAA	2 cut(s)	217, 665
AjnI	CCWGG	1 cut(s)	127
AjuI	GAANNNNNNNTTGG	2 cut(s)	676, 708
AluBI	AGCT	2 cut(s)	149, 238
AluI	AGCT	2 cut(s)	149, 238
Alw26I	GTCTC	2 cut(s)	357, 682
AlwI	GGATC	1 cut(s)	679
AoxI	GGCC	2 cut(s)	184, 454
ApoI	RAATTY	3 cut(s)	18, 100, 640
AseI	ATTAAT	1 cut(s)	419
AspA2I	CCTAGG	2 cut(s)	407, 707
AspLEI	GCGC	2 cut(s)	46, 601
AspS9I	GGNCC	2 cut(s)	131, 521
AsuC2I	CCSGG	1 cut(s)	471
AsuHPI	GGTGA	1 cut(s)	66
AvaII	GGWCC	2 cut(s)	131, 521
AvrII	CCTAGG	2 cut(s)	407, 707
BanI	GGYRCC	1 cut(s)	626
BanII	GRGCYC	1 cut(s)	596
BbsI	GAAGAC	1 cut(s)	320
BccI	CCATC	1 cut(s)	408
BciT130I	CCWGG	1 cut(s)	129
BcnI	CCSGG	1 cut(s)	471
BcoDI	GTCTC	2 cut(s)	357, 682
BfaI	CTAG	4 cut(s)	360, 408, 659, 708
BfmI	CTRYAG	1 cut(s)	190
BisI	GCNGC	2 cut(s)	42, 602
BlnI	CCTAGG	2 cut(s)	407, 707
BlsI	GCNGC	2 cut(s)	43, 603
Bme1390I	CCNGG	2 cut(s)	129, 471
Bme18I	GGWCC	2 cut(s)	131, 521
BmgT120I	GGNCC	2 cut(s)	131, 521
BmiI	GGNNCC	3 cut(s)	126, 133, 628
BmrFI	CCNGG	2 cut(s)	129, 471
BmsI	GCATC	3 cut(s)	73, 495, 705
BpiI	GAAGAC	1 cut(s)	320
BpmI	CTGGAG	2 cut(s)	171, 414
Bpu10I	CCTNAGC	1 cut(s)	141
BpuMI	CCSGG	1 cut(s)	471
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	3 cut(s)	407, 683, 707
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 547
Bse1I	ACTGG	1 cut(s)	301
Bse3DI	GCAATG	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	3 cut(s)	407, 683, 707
BseGI	GGATG	4 cut(s)	220, 355, 403, 733
BseLI	CCNNNNNNNGG	2 cut(s)	238, 547
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	2 cut(s)	132, 579
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	55
Bsh1236I	CGCG	2 cut(s)	44, 601
Bsh1285I	CGRYCG	1 cut(s)	470
BshFI	GGCC	2 cut(s)	186, 456
BshNI	GGYRCC	1 cut(s)	626
BsiEI	CGRYCG	1 cut(s)	470
BsiSI	CCGG	2 cut(s)	15, 470
BslFI	GGGAC	1 cut(s)	13
BslI	CCNNNNNNNGG	2 cut(s)	238, 547
BsmAI	GTCTC	2 cut(s)	357, 682
BsmFI	GGGAC	1 cut(s)	13
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	2 cut(s)	186, 456
Bsp1286I	GDGCHC	1 cut(s)	596
Bsp143I	GATC	2 cut(s)	107, 671
BspACI	CCGC	5 cut(s)	39, 42, 77, 601, 725
BspANI	GGCC	2 cut(s)	186, 456
BspCNI	CTCAG	2 cut(s)	133, 580
BspFNI	CGCG	2 cut(s)	44, 601
BspLI	GGNNCC	3 cut(s)	126, 133, 628
BspPI	GGATC	1 cut(s)	679
BspT107I	GGYRCC	1 cut(s)	626
BsrDI	GCAATG	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	3 cut(s)	407, 683, 707
BssMI	GATC	2 cut(s)	107, 671
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	3 cut(s)	407, 683, 707
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	72
Bst6I	CTCTTC	1 cut(s)	379
BstACI	GRCGYC	1 cut(s)	60
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	147, 240
BstDEI	CTNAG	2 cut(s)	141, 588
BstF5I	GGATG	4 cut(s)	220, 355, 403, 733
BstFNI	CGCG	2 cut(s)	44, 601
BstHHI	GCGC	2 cut(s)	46, 601
BstKTI	GATC	2 cut(s)	110, 674
BstMAI	GTCTC	2 cut(s)	357, 682
BstMBI	GATC	2 cut(s)	107, 671
BstMCI	CGRYCG	1 cut(s)	470
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 377
BstNI	CCWGG	1 cut(s)	129
BstNSI	RCATGY	2 cut(s)	210, 345
BstSCI	CCNGG	2 cut(s)	127, 469
BstSFI	CTRYAG	1 cut(s)	190
BstUI	CGCG	2 cut(s)	44, 601
BstV2I	GAAGAC	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	186, 456
BtsCI	GGATG	4 cut(s)	220, 355, 403, 733
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	2 cut(s)	68, 249
Cac8I	GCNNGC	2 cut(s)	147, 240
CfoI	GCGC	2 cut(s)	46, 601
Cfr13I	GGNCC	2 cut(s)	131, 521
CseI	GACGC	1 cut(s)	68
CviAII	CATG	4 cut(s)	25, 207, 342, 394
DdeI	CTNAG	2 cut(s)	141, 588
DpnI	GATC	2 cut(s)	109, 673
DpnII	GATC	2 cut(s)	107, 671
Eam1104I	CTCTTC	1 cut(s)	379
EarI	CTCTTC	1 cut(s)	379
EciI	GGCGGA	1 cut(s)	28
Eco130I	CCWWGG	3 cut(s)	407, 683, 707
Eco147I	AGGCCT	2 cut(s)	186, 456
Eco24I	GRGCYC	1 cut(s)	596
Eco47I	GGWCC	2 cut(s)	131, 521
Eco57I	CTGAAG	1 cut(s)	332
EcoRI	GAATTC	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	127
EcoT14I	CCWWGG	3 cut(s)	407, 683, 707
EcoT38I	GRGCYC	1 cut(s)	596
ErhI	CCWWGG	3 cut(s)	407, 683, 707
FaeI	CATG	4 cut(s)	28, 210, 345, 397
FaiI	YATR	7 cut(s)	26, 208, 343, 395, 504, 548, 564
FaqI	GGGAC	1 cut(s)	13
FatI	CATG	4 cut(s)	24, 206, 341, 393
FblI	GTMKAC	1 cut(s)	617
Fnu4HI	GCNGC	2 cut(s)	42, 602
FokI	GGATG	4 cut(s)	207, 342, 390, 740
FriOI	GRGCYC	1 cut(s)	596
Fsp4HI	GCNGC	2 cut(s)	42, 602
FspBI	CTAG	4 cut(s)	360, 408, 659, 708
GlaI	GCGC	2 cut(s)	45, 600
GluI	GCNGC	2 cut(s)	42, 602
GsuI	CTGGAG	2 cut(s)	171, 414
HaeIII	GGCC	2 cut(s)	186, 456
HapII	CCGG	2 cut(s)	15, 470
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	2 cut(s)	46, 601
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	4 cut(s)	28, 210, 345, 397
Hin6I	GCGC	2 cut(s)	44, 599
HinP1I	GCGC	2 cut(s)	44, 599
HincII	GTYRAC	1 cut(s)	618
HindII	GTYRAC	1 cut(s)	618
HinfI	GANTC	2 cut(s)	116, 445
HpaII	CCGG	2 cut(s)	15, 470
HphI	GGTGA	1 cut(s)	66
Hpy166II	GTNNAC	1 cut(s)	618
Hpy188I	TCNGA	5 cut(s)	179, 335, 525, 652, 703
Hpy188III	TCNNGA	2 cut(s)	140, 431
Hpy8I	GTNNAC	1 cut(s)	618
Hpy99I	CGWCG	2 cut(s)	59, 62
HpyAV	CCTTC	4 cut(s)	256, 467, 647, 729
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4V	TGCA	6 cut(s)	86, 254, 327, 345, 486, 531
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 377
HpyF3I	CTNAG	2 cut(s)	141, 588
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	4 cut(s)	28, 210, 345, 397
HspAI	GCGC	2 cut(s)	44, 599
Kzo9I	GATC	2 cut(s)	107, 671
LmnI	GCTCC	3 cut(s)	335, 412, 433
LweI	GCATC	3 cut(s)	73, 495, 705
MaeI	CTAG	4 cut(s)	360, 408, 659, 708
MaeIII	GTNAC	2 cut(s)	49, 72
MalI	GATC	2 cut(s)	109, 673
MboI	GATC	2 cut(s)	107, 671
MboII	GAAGA	4 cut(s)	325, 396, 547, 573
MhlI	GDGCHC	1 cut(s)	596
MluCI	AATT	6 cut(s)	18, 100, 282, 375, 420, 640
MlyI	GAGTC	1 cut(s)	454
MnlI	CCTC	5 cut(s)	73, 76, 197, 234, 739
MseI	TTAA	2 cut(s)	419, 638
MspI	CCGG	2 cut(s)	15, 470
MspR9I	CCNGG	2 cut(s)	129, 471
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	1 cut(s)	129
MvnI	CGCG	2 cut(s)	44, 601
MwoI	GCNNNNNNNGC	2 cut(s)	41, 377
NciI	CCSGG	1 cut(s)	471
NdeII	GATC	2 cut(s)	107, 671
NlaIII	CATG	4 cut(s)	28, 210, 345, 397
NlaIV	GGNNCC	3 cut(s)	126, 133, 628
NmuCI	GTSAC	2 cut(s)	49, 72
NspI	RCATGY	2 cut(s)	210, 345
PceI	AGGCCT	2 cut(s)	186, 456
PciI	ACATGT	1 cut(s)	206
PctI	GAATGC	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	116
PflMI	CCANNNNNTGG	1 cut(s)	547
PkrI	GCNGC	2 cut(s)	43, 603
PleI	GAGTC	1 cut(s)	453
PpsI	GAGTC	1 cut(s)	453
PscI	ACATGT	1 cut(s)	206
PshBI	ATTAAT	1 cut(s)	419
PsiI	TTATAA	1 cut(s)	564
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	3 cut(s)	126, 133, 628
PspPI	GGNCC	2 cut(s)	131, 521
SalI	GTCGAC	1 cut(s)	616
SaqAI	TTAA	2 cut(s)	419, 638
SatI	GCNGC	2 cut(s)	42, 602
Sau3AI	GATC	2 cut(s)	107, 671
Sau96I	GGNCC	2 cut(s)	131, 521
SchI	GAGTC	1 cut(s)	454
ScrFI	CCNGG	2 cut(s)	129, 471
SduI	GDGCHC	1 cut(s)	596
SetI	ASST	8 cut(s)	130, 151, 240, 295, 312, 481, 570, 658
SfaNI	GCATC	3 cut(s)	73, 495, 705
SfcI	CTRYAG	1 cut(s)	190
SinI	GGWCC	2 cut(s)	131, 521
Sse9I	AATT	6 cut(s)	18, 100, 282, 375, 420, 640
SseBI	AGGCCT	2 cut(s)	186, 456
SsiI	CCGC	5 cut(s)	39, 42, 77, 601, 725
SspI	AATATT	1 cut(s)	736
SspMI	CTAG	4 cut(s)	360, 408, 659, 708
StuI	AGGCCT	2 cut(s)	186, 456
StyD4I	CCNGG	2 cut(s)	127, 469
StyI	CCWWGG	3 cut(s)	407, 683, 707
TaaI	ACNGT	1 cut(s)	72
TaqI	TCGA	2 cut(s)	9, 617
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	6 cut(s)	18, 100, 282, 375, 420, 640
TauI	GCSGC	2 cut(s)	44, 604
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	2 cut(s)	419, 638
Tru9I	TTAA	2 cut(s)	419, 638
TscAI	CASTG	2 cut(s)	75, 256
TseFI	GTSAC	2 cut(s)	49, 72
Tsp45I	GTSAC	2 cut(s)	49, 72
TspDTI	ATGAA	6 cut(s)	113, 275, 341, 567, 624, 744
TspRI	CASTG	2 cut(s)	75, 256
Van91I	CCANNNNNTGG	1 cut(s)	547
VpaK11BI	GGWCC	2 cut(s)	131, 521
VspI	ATTAAT	1 cut(s)	419
XapI	RAATTY	3 cut(s)	18, 100, 640
XceI	RCATGY	2 cut(s)	210, 345
XmaJI	CCTAGG	2 cut(s)	407, 707
XmiI	GTMKAC	1 cut(s)	617
XspI	CTAG	4 cut(s)	360, 408, 659, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.