Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005969.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

58123 .. 62559

Gene Structure 4437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atggtggtcggaatcgcctggaattgcagagctcgccgaagaagtctcaaagcttctagtcgtcgttgctccttctccattcaatgcatgagtgatccaaaggcacagggacgtaggcgacgcacagacgaagggaatggtggttgtgcgccatcgtggggtggcaggacatcgtccctccagtcggatttctttctcgggtcgcgactgaggccttggaggtcggctgtaatggcttcttcgctcttggtcatcttggccagagctcgcgtagggacaagtgccttccagtgtctccagaagcttccggccaccaacaacaagttcacctacaactgcgacggtcacaccttcaattacctcgtcgacaatggctatacatactgtgtggtggcggatgaatcagttggaagacaagtgcctattgcttttctggagcgtgccaaggatgattttgttgtgaaatatggtggtgggaaggccgctacggctgctgccaacagtcttaacaaggaatttgggtcaaaattgaaggaacatatgcaatactgtgttgatcatcctgaagaaataggcaagcttgctaaggttaaggcccaggtttcagaagttaaaggtgttatgatggaaaacattgaaaaggttttggatagaggggaaaagatagagcttttggttgataagactgagacccttcatcatcaggcacaggctttccggaatgttgggactgaaatgagaaggaagatgtggctgcagaacatgaaggtgagactgagagaggagaggagagagatgatgacgggggttcggggacgatctgctgggcctagggttagggcggagtcgatggatgctagggcaatggctggtcgtggggatcactgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0097708 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

296

Amino Acids

33.18

Weight (kDa)

9.88

Isoelectric Point (pI)

49.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	97 - 174	4.4e-22	Regulated-SNARE-like domain
Synaptobrevin	PF00957	193 - 258	6.8e-24	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	366
AccII	CGCG	2 cut(s)	205, 270
AccIII	TCCGGA	1 cut(s)	717
AciI	CCGC	3 cut(s)	395, 483, 842
AclWI	GGATC	2 cut(s)	89, 888
AcoI	YGGCCR	2 cut(s)	258, 309
AcsI	RAATTY	1 cut(s)	515
AcuI	CTGAAG	1 cut(s)	585
AfiI	CCNNNNNNNGG	2 cut(s)	158, 184
AgsI	TTSAA	4 cut(s)	83, 355, 532, 638
AjnI	CCWGG	2 cut(s)	17, 597
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AluBI	AGCT	6 cut(s)	32, 53, 266, 304, 580, 670
AluI	AGCT	6 cut(s)	32, 53, 266, 304, 580, 670
Alw21I	GWGCWC	2 cut(s)	34, 268
Alw26I	GTCTC	4 cut(s)	50, 299, 683, 766
AlwI	GGATC	2 cut(s)	89, 888
Ama87I	CYCGRG	1 cut(s)	197
Aor13HI	TCCGGA	1 cut(s)	717
AoxI	GGCC	6 cut(s)	212, 258, 309, 480, 594, 827
ApeKI	GCWGC	3 cut(s)	491, 494, 754
ApoI	RAATTY	1 cut(s)	515
AspA2I	CCTAGG	1 cut(s)	830
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	2 cut(s)	595, 827
AsuHPI	GGTGA	2 cut(s)	319, 781
AvaI	CYCGRG	1 cut(s)	197
AvrII	CCTAGG	1 cut(s)	830
BalI	TGGCCA	1 cut(s)	260
BanII	GRGCYC	2 cut(s)	34, 268
BbsI	GAAGAC	1 cut(s)	418
Bbv12I	GWGCWC	2 cut(s)	34, 268
BbvI	GCAGC	3 cut(s)	478, 481, 741
BccI	CCATC	3 cut(s)	160, 619, 844
BceAI	ACGGC	1 cut(s)	504
BciT130I	CCWGG	2 cut(s)	19, 599
BclI	TGATCA	1 cut(s)	556
BcoDI	GTCTC	4 cut(s)	50, 299, 683, 766
BfaI	CTAG	3 cut(s)	57, 831, 858
BfmI	CTRYAG	1 cut(s)	755
BglI	GCCNNNNNGGC	1 cut(s)	488
BisI	GCNGC	4 cut(s)	483, 492, 495, 755
BlnI	CCTAGG	1 cut(s)	830
BlsI	GCNGC	4 cut(s)	484, 493, 496, 756
Bme1390I	CCNGG	2 cut(s)	19, 599
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	2 cut(s)	595, 827
BmrFI	CCNGG	2 cut(s)	19, 599
BmsI	GCATC	1 cut(s)	844
BpiI	GAAGAC	1 cut(s)	418
BpmI	CTGGAG	3 cut(s)	164, 281, 455
Bpu10I	CCTNAGC	1 cut(s)	585
BsaI	GGTCTC	1 cut(s)	683
BsaJI	CCNNGG	4 cut(s)	215, 444, 597, 830
BsaWI	WCCGGW	1 cut(s)	717
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 184
Bse1I	ACTGG	2 cut(s)	181, 289
Bse3DI	GCAATG	1 cut(s)	870
BseAI	TCCGGA	1 cut(s)	717
BseBI	CCWGG	2 cut(s)	19, 599
BseDI	CCNNGG	4 cut(s)	215, 444, 597, 830
BseGI	GGATG	4 cut(s)	403, 454, 559, 859
BseLI	CCNNNNNNNGG	2 cut(s)	158, 184
BseMI	GCAATG	1 cut(s)	870
BseMII	CTCAG	3 cut(s)	200, 678, 767
BseNI	ACTGG	2 cut(s)	181, 289
BseRI	GAGGAG	2 cut(s)	797, 802
BseXI	GCAGC	3 cut(s)	478, 481, 741
BseYI	CCCAGC	1 cut(s)	824
Bsh1236I	CGCG	2 cut(s)	205, 270
BshFI	GGCC	6 cut(s)	214, 260, 311, 482, 596, 829
BsiHKAI	GWGCWC	2 cut(s)	34, 268
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	308, 718
BslFI	GGGAC	5 cut(s)	123, 160, 289, 742, 828
BslI	CCNNNNNNNGG	2 cut(s)	158, 184
BsmAI	GTCTC	4 cut(s)	50, 299, 683, 766
BsmFI	GGGAC	5 cut(s)	123, 160, 289, 742, 828
BsnI	GGCC	6 cut(s)	214, 260, 311, 482, 596, 829
Bso31I	GGTCTC	1 cut(s)	683
BsoBI	CYCGRG	1 cut(s)	197
Bsp1286I	GDGCHC	2 cut(s)	34, 268
Bsp13I	TCCGGA	1 cut(s)	717
Bsp143I	GATC	4 cut(s)	94, 556, 818, 880
Bsp68I	TCGCGA	1 cut(s)	205
BspACI	CCGC	3 cut(s)	395, 483, 842
BspANI	GGCC	6 cut(s)	214, 260, 311, 482, 596, 829
BspCNI	CTCAG	3 cut(s)	201, 679, 768
BspEI	TCCGGA	1 cut(s)	717
BspFNI	CGCG	2 cut(s)	205, 270
BspMAI	CTGCAG	1 cut(s)	759
BspPI	GGATC	2 cut(s)	89, 888
BspTNI	GGTCTC	1 cut(s)	683
BsrDI	GCAATG	1 cut(s)	870
BsrI	ACTGG	2 cut(s)	181, 289
BssECI	CCNNGG	4 cut(s)	215, 444, 597, 830
BssMI	GATC	4 cut(s)	94, 556, 818, 880
BssT1I	CCWWGG	3 cut(s)	215, 444, 830
Bst2UI	CCWGG	2 cut(s)	19, 599
Bst4CI	ACNGT	5 cut(s)	344, 386, 503, 551, 887
BstC8I	GCNNGC	5 cut(s)	34, 268, 441, 578, 582
BstDEI	CTNAG	4 cut(s)	209, 585, 687, 776
BstF5I	GGATG	4 cut(s)	403, 454, 559, 859
BstFNI	CGCG	2 cut(s)	205, 270
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	4 cut(s)	97, 559, 821, 883
BstMAI	GTCTC	4 cut(s)	50, 299, 683, 766
BstMBI	GATC	4 cut(s)	94, 556, 818, 880
BstMWI	GCNNNNNNNGC	5 cut(s)	33, 211, 233, 488, 491
BstNI	CCWGG	2 cut(s)	19, 599
BstSCI	CCNGG	2 cut(s)	17, 597
BstSFI	CTRYAG	1 cut(s)	755
BstUI	CGCG	2 cut(s)	205, 270
BstV1I	GCAGC	3 cut(s)	478, 481, 741
BstV2I	GAAGAC	1 cut(s)	418
BsuRI	GGCC	6 cut(s)	214, 260, 311, 482, 596, 829
BtsCI	GGATG	4 cut(s)	403, 454, 559, 859
BtsIMutI	CAGTG	2 cut(s)	296, 883
BtuMI	TCGCGA	1 cut(s)	205
Cac8I	GCNNGC	5 cut(s)	34, 268, 441, 578, 582
CfoI	GCGC	1 cut(s)	151
Cfr13I	GGNCC	2 cut(s)	595, 827
CseI	GACGC	1 cut(s)	129
CviAII	CATG	2 cut(s)	88, 763
DdeI	CTNAG	4 cut(s)	209, 585, 687, 776
DpnI	GATC	4 cut(s)	96, 558, 820, 882
DpnII	GATC	4 cut(s)	94, 556, 818, 880
EaeI	YGGCCR	2 cut(s)	258, 309
EciI	GGCGGA	2 cut(s)	410, 857
Ecl136II	GAGCTC	2 cut(s)	32, 266
Eco130I	CCWWGG	3 cut(s)	215, 444, 830
Eco147I	AGGCCT	1 cut(s)	214
Eco24I	GRGCYC	2 cut(s)	34, 268
Eco31I	GGTCTC	1 cut(s)	683
Eco53kI	GAGCTC	2 cut(s)	32, 266
Eco57I	CTGAAG	1 cut(s)	585
Eco88I	CYCGRG	1 cut(s)	197
EcoICRI	GAGCTC	2 cut(s)	32, 266
EcoRII	CCWGG	2 cut(s)	17, 597
EcoT14I	CCWWGG	3 cut(s)	215, 444, 830
EcoT22I	ATGCAT	1 cut(s)	89
EcoT38I	GRGCYC	2 cut(s)	34, 268
ErhI	CCWWGG	3 cut(s)	215, 444, 830
FaeI	CATG	2 cut(s)	91, 766
FaiI	YATR	8 cut(s)	89, 378, 382, 468, 540, 542, 623, 764
FaqI	GGGAC	5 cut(s)	123, 160, 289, 742, 828
FatI	CATG	2 cut(s)	87, 762
FauNDI	CATATG	1 cut(s)	540
FbaI	TGATCA	1 cut(s)	556
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	4 cut(s)	483, 492, 495, 755
FokI	GGATG	4 cut(s)	410, 461, 546, 866
FriOI	GRGCYC	2 cut(s)	34, 268
Fsp4HI	GCNGC	4 cut(s)	483, 492, 495, 755
FspBI	CTAG	3 cut(s)	57, 831, 858
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	4 cut(s)	483, 492, 495, 755
GsaI	CCCAGC	1 cut(s)	828
GsuI	CTGGAG	3 cut(s)	164, 281, 455
HaeIII	GGCC	6 cut(s)	214, 260, 311, 482, 596, 829
HapII	CCGG	2 cut(s)	308, 718
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	2 cut(s)	91, 766
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	3 cut(s)	51, 302, 578
HinfI	GANTC	3 cut(s)	12, 401, 845
HpaII	CCGG	2 cut(s)	308, 718
HphI	GGTGA	2 cut(s)	319, 781
Hpy166II	GTNNAC	2 cut(s)	327, 367
Hpy188I	TCNGA	3 cut(s)	11, 187, 607
Hpy188III	TCNNGA	5 cut(s)	204, 298, 434, 563, 718
Hpy8I	GTNNAC	2 cut(s)	327, 367
Hpy99I	CGWCG	4 cut(s)	66, 123, 344, 368
HpyAV	CCTTC	9 cut(s)	82, 125, 295, 361, 472, 526, 704, 735, 760
HpyCH4III	ACNGT	5 cut(s)	344, 386, 503, 551, 887
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	4 cut(s)	27, 87, 544, 757
HpyF10VI	GCNNNNNNNGC	5 cut(s)	33, 211, 233, 488, 491
HpyF3I	CTNAG	4 cut(s)	209, 585, 687, 776
HpySE526I	ACGT	1 cut(s)	112
Hsp92II	CATG	2 cut(s)	91, 766
HspAI	GCGC	1 cut(s)	149
Kpn2I	TCCGGA	1 cut(s)	717
Ksp22I	TGATCA	1 cut(s)	556
Kzo9I	GATC	4 cut(s)	94, 556, 818, 880
LmnI	GCTCC	2 cut(s)	74, 436
Lsp1109I	GCAGC	3 cut(s)	478, 481, 741
LweI	GCATC	1 cut(s)	844
MaeI	CTAG	3 cut(s)	57, 831, 858
MaeII	ACGT	1 cut(s)	112
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	4 cut(s)	96, 558, 820, 882
MboI	GATC	4 cut(s)	94, 556, 818, 880
MboII	GAAGA	5 cut(s)	51, 231, 423, 578, 757
MhlI	GDGCHC	2 cut(s)	34, 268
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	4 cut(s)	22, 355, 515, 527
MluNI	TGGCCA	1 cut(s)	260
MlyI	GAGTC	1 cut(s)	854
MmeI	TCCRAC	2 cut(s)	165, 388
MnlI	CCTC	7 cut(s)	188, 204, 213, 371, 647, 775, 780
Mox20I	TGGCCA	1 cut(s)	260
Mph1103I	ATGCAT	1 cut(s)	89
MroI	TCCGGA	1 cut(s)	717
MscI	TGGCCA	1 cut(s)	260
MseI	TTAA	3 cut(s)	507, 591, 612
MslI	CAYNNNNRTG	1 cut(s)	767
Msp20I	TGGCCA	1 cut(s)	260
MspI	CCGG	2 cut(s)	308, 718
MspR9I	CCNGG	2 cut(s)	19, 599
MvaI	CCWGG	2 cut(s)	19, 599
MvnI	CGCG	2 cut(s)	205, 270
MwoI	GCNNNNNNNGC	5 cut(s)	33, 211, 233, 488, 491
NdeI	CATATG	1 cut(s)	540
NdeII	GATC	4 cut(s)	94, 556, 818, 880
NlaIII	CATG	2 cut(s)	91, 766
NmuCI	GTSAC	1 cut(s)	344
NruI	TCGCGA	1 cut(s)	205
NsiI	ATGCAT	1 cut(s)	89
PceI	AGGCCT	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	12, 401
PflFI	GACNNNGTC	1 cut(s)	172
PkrI	GCNGC	4 cut(s)	484, 493, 496, 756
PleI	GAGTC	1 cut(s)	853
PpsI	GAGTC	1 cut(s)	853
Psp124BI	GAGCTC	2 cut(s)	34, 268
Psp6I	CCWGG	2 cut(s)	17, 597
PspFI	CCCAGC	1 cut(s)	824
PspGI	CCWGG	2 cut(s)	17, 597
PspPI	GGNCC	2 cut(s)	595, 827
PstI	CTGCAG	1 cut(s)	759
PsyI	GACNNNGTC	1 cut(s)	172
RruI	TCGCGA	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	767
SacI	GAGCTC	2 cut(s)	34, 268
SalI	GTCGAC	1 cut(s)	365
SaqAI	TTAA	3 cut(s)	507, 591, 612
SatI	GCNGC	4 cut(s)	483, 492, 495, 755
Sau3AI	GATC	4 cut(s)	94, 556, 818, 880
Sau96I	GGNCC	2 cut(s)	595, 827
SchI	GAGTC	1 cut(s)	854
ScrFI	CCNGG	2 cut(s)	19, 599
SduI	GDGCHC	2 cut(s)	34, 268
SfaNI	GCATC	1 cut(s)	844
SfcI	CTRYAG	1 cut(s)	755
SmiMI	CAYNNNNRTG	1 cut(s)	767
Sse9I	AATT	4 cut(s)	22, 355, 515, 527
SseBI	AGGCCT	1 cut(s)	214
SsiI	CCGC	3 cut(s)	395, 483, 842
SspMI	CTAG	3 cut(s)	57, 831, 858
SstI	GAGCTC	2 cut(s)	34, 268
StuI	AGGCCT	1 cut(s)	214
StyD4I	CCNGG	2 cut(s)	17, 597
StyI	CCWWGG	3 cut(s)	215, 444, 830
TaaI	ACNGT	5 cut(s)	344, 386, 503, 551, 887
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	2 cut(s)	366, 848
TasI	AATT	4 cut(s)	22, 355, 515, 527
TauI	GCSGC	1 cut(s)	485
TfiI	GAWTC	2 cut(s)	12, 401
Tru1I	TTAA	3 cut(s)	507, 591, 612
Tru9I	TTAA	3 cut(s)	507, 591, 612
TscAI	CASTG	2 cut(s)	296, 890
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	3 cut(s)	491, 494, 754
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	3 cut(s)	414, 686, 779
TspRI	CASTG	2 cut(s)	296, 890
Tth111I	GACNNNGTC	1 cut(s)	172
XapI	RAATTY	1 cut(s)	515
XmaJI	CCTAGG	1 cut(s)	830
XmiI	GTMKAC	1 cut(s)	366
XspI	CTAG	3 cut(s)	57, 831, 858
Zsp2I	ATGCAT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.