Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005969.1

Orthogroup ID

OG0024165

Physical Location & Seq

Genomic Coordinates Forward (+)

116328 .. 117335

Gene Structure 1008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atggctgtgtttttgagactacccgcgatccctttccctctaagaaactcgtcacttcattcctcaagaggaataaaaatggctctaaaaacccagaagaacaccaccgtctctttctctactgctactactcgaaagctgcccatactgctctttgacatcatggacaccattgttcgtgaccctttttaccatgacatccctgctttcttcagaatgccattcgaagaactaatagaatcgaagcacccaactgcatggattgagtttgaaaaggggttgattgatgaggtggaactagcaagaaaattctttaaggatggaaggccttttgatttggaaggtagtttcttaatcttttttggttttgatgttagctttagtggacatttccccactggtgtctgcagctgttatgtacttcaaatactgctcttttattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0090711

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

HAD_2

Protein Analysis

147

Amino Acids

16.97

Weight (kDa)

6.9

Isoelectric Point (pI)

53.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024165)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g00710 FvH4_6g00710
rosa_multiflora	Rmu_sc0005969.1_g000034

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	26
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	308
AcuI	CTGAAG	1 cut(s)	196
AfaI	GTAC	1 cut(s)	420
AgsI	TTSAA	2 cut(s)	272, 425
AluBI	AGCT	3 cut(s)	139, 378, 411
AluI	AGCT	3 cut(s)	139, 378, 411
Alw26I	GTCTC	2 cut(s)	10, 115
AlwI	GGATC	1 cut(s)	22
AoxI	GGCC	1 cut(s)	326
ApeKI	GCWGC	2 cut(s)	139, 408
ApoI	RAATTY	1 cut(s)	308
AsuII	TTCGAA	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	126, 420
BccI	CCATC	1 cut(s)	314
BcoDI	GTCTC	2 cut(s)	10, 115
BfaI	CTAG	1 cut(s)	299
BfmI	CTRYAG	1 cut(s)	406
BisI	GCNGC	2 cut(s)	140, 409
BlsI	GCNGC	2 cut(s)	141, 410
Bpu14I	TTCGAA	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	49
Bse1I	ACTGG	1 cut(s)	403
BseGI	GGATG	2 cut(s)	198, 325
BseNI	ACTGG	1 cut(s)	403
BseXI	GCAGC	2 cut(s)	126, 420
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	328
BsmAI	GTCTC	2 cut(s)	10, 115
BsmBI	CGTCTC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	222
BsnI	GGCC	1 cut(s)	328
Bsp119I	TTCGAA	1 cut(s)	225
Bsp143I	GATC	1 cut(s)	27
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	328
BspFNI	CGCG	1 cut(s)	26
BspMAI	CTGCAG	1 cut(s)	410
BspPI	GGATC	1 cut(s)	22
BspT104I	TTCGAA	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	403
BssMI	GATC	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	109
BstBI	TTCGAA	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	41
BstF5I	GGATG	2 cut(s)	198, 325
BstFNI	CGCG	1 cut(s)	26
BstKTI	GATC	1 cut(s)	30
BstMAI	GTCTC	2 cut(s)	10, 115
BstMBI	GATC	1 cut(s)	27
BstMWI	GCNNNNNNNGC	1 cut(s)	148
BstSFI	CTRYAG	1 cut(s)	406
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	126, 420
BstXI	CCANNNNNNTGG	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	328
BtsCI	GGATG	2 cut(s)	198, 325
BtsIMutI	CAGTG	1 cut(s)	396
Csp6I	GTAC	1 cut(s)	419
CviAII	CATG	3 cut(s)	163, 194, 258
CviJI	RGCY	6 cut(s)	5, 83, 139, 328, 378, 411
CviKI_1	RGCY	6 cut(s)	5, 83, 139, 328, 378, 411
CviQI	GTAC	1 cut(s)	419
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
Eco147I	AGGCCT	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	196
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	3 cut(s)	166, 197, 261
FaiI	YATR	5 cut(s)	146, 164, 195, 259, 417
FatI	CATG	3 cut(s)	162, 193, 257
FauI	CCCGC	1 cut(s)	31
Fnu4HI	GCNGC	2 cut(s)	140, 409
FokI	GGATG	2 cut(s)	185, 332
Fsp4HI	GCNGC	2 cut(s)	140, 409
FspBI	CTAG	1 cut(s)	299
GluI	GCNGC	2 cut(s)	140, 409
HaeIII	GGCC	1 cut(s)	328
Hin1II	CATG	3 cut(s)	166, 197, 261
HinfI	GANTC	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	1 cut(s)	215
Hpy188III	TCNNGA	2 cut(s)	66, 179
Hpy8I	GTNNAC	1 cut(s)	386
HpyAV	CCTTC	2 cut(s)	318, 335
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	2 cut(s)	257, 408
HpyF10VI	GCNNNNNNNGC	1 cut(s)	148
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	3 cut(s)	166, 197, 261
Kzo9I	GATC	1 cut(s)	27
LpnPI	CCDG	3 cut(s)	107, 216, 384
Lsp1109I	GCAGC	2 cut(s)	126, 420
MaeI	CTAG	1 cut(s)	299
MaeIII	GTNAC	2 cut(s)	51, 179
MalI	GATC	1 cut(s)	29
MboI	GATC	1 cut(s)	27
MboII	GAAGA	3 cut(s)	109, 202, 239
MluCI	AATT	1 cut(s)	308
MnlI	CCTC	4 cut(s)	48, 62, 73, 283
MseI	TTAA	2 cut(s)	315, 353
MspA1I	CMGCKG	1 cut(s)	411
Mva1269I	GAATGC	1 cut(s)	222
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	148
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	3 cut(s)	166, 197, 261
NmuCI	GTSAC	2 cut(s)	51, 179
NspV	TTCGAA	1 cut(s)	225
PceI	AGGCCT	1 cut(s)	328
PctI	GAATGC	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	2 cut(s)	141, 410
PstI	CTGCAG	1 cut(s)	410
PvuII	CAGCTG	1 cut(s)	411
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
SaqAI	TTAA	2 cut(s)	315, 353
SatI	GCNGC	2 cut(s)	140, 409
Sau3AI	GATC	1 cut(s)	27
SetI	ASST	5 cut(s)	141, 294, 346, 380, 413
SfcI	CTRYAG	1 cut(s)	406
SfuI	TTCGAA	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse9I	AATT	1 cut(s)	308
SseBI	AGGCCT	1 cut(s)	328
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	299
StuI	AGGCCT	1 cut(s)	328
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	3 cut(s)	133, 225, 242
TasI	AATT	1 cut(s)	308
TatI	WGTACW	1 cut(s)	418
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	2 cut(s)	315, 353
Tru9I	TTAA	2 cut(s)	315, 353
TscAI	CASTG	1 cut(s)	403
TseFI	GTSAC	2 cut(s)	51, 179
TseI	GCWGC	2 cut(s)	139, 408
Tsp45I	GTSAC	2 cut(s)	51, 179
TspDTI	ATGAA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	403
XapI	RAATTY	1 cut(s)	308
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.