Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005969.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

159240 .. 159533

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atgtatgtacaggagttcggctcagaatgtagctatccaaataaggtttgtgtttatatatcatatcttgattcagtcaagtactttagacctgcagaggcaagagcagtgacaggagaagctcttcggacatttgtttaccatgaaggattgataggataccttgagttttgcaagaaacaaggcttcgtgaccgcctacatatgggcctgccccccttcaaaggaagaagattatattctgtactgccatccaccaatgcagaagacacccttgccagttaagctgcgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04024 ko04066 ko04068 ko04110 ko04310 ko04330 ko04350 ko04520 ko04630 ko04720 ko04916 ko04919 ko04922 ko05016 ko05152 ko05161 ko05164 ko05165 ko05166 ko05167 ko05168 ko05169 ko05200 ko05203 ko05206 ko05211 ko05215 map04024 map04066 map04068 map04110 map04310 map04330 map04350 map04520 map04630 map04720 map04916 map04919 map04922 map05016 map05152 map05161 map05164 map05165 map05166 map05167 map05168 map05169 map05200 map05203 map05206 map05211 map05215

Pfam Domains

Protein Families

HAT_KAT11 PHD ZZ zf-TAZ

Protein Analysis

97

Amino Acids

11.27

Weight (kDa)

7.6

Isoelectric Point (pI)

54.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAT_KAT11	PF08214	1 - 90	6.5e-17	Histone acetylation protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	100
AciI	CCGC	1 cut(s)	195
AfaI	GTAC	3 cut(s)	9, 83, 245
AfiI	CCNNNNNNNGG	2 cut(s)	204, 223
AgsI	TTSAA	1 cut(s)	222
AluBI	AGCT	3 cut(s)	33, 122, 286
AluI	AGCT	3 cut(s)	33, 122, 286
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	286
Asp700I	GAANNNNTTC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	1 cut(s)	258
BciVI	GTATCC	1 cut(s)	152
BfmI	CTRYAG	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	100
BfuI	GTATCC	1 cut(s)	152
BisI	GCNGC	1 cut(s)	287
BlsI	GCNGC	1 cut(s)	288
BmcAI	AGTACT	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	207
BpiI	GAAGAC	1 cut(s)	272
BplI	GAGNNNNNCTC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 223
Bse1I	ACTGG	1 cut(s)	278
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	2 cut(s)	204, 223
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	273
BshFI	GGCC	1 cut(s)	209
BslI	CCNNNNNNNGG	2 cut(s)	204, 223
BsnI	GGCC	1 cut(s)	209
Bsp1407I	TGTACA	1 cut(s)	7
BspACI	CCGC	1 cut(s)	195
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	35
BspMAI	CTGCAG	1 cut(s)	97
BspMI	ACCTGC	1 cut(s)	100
BspQI	GCTCTTC	1 cut(s)	129
BsrGI	TGTACA	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	278
Bst6I	CTCTTC	1 cut(s)	129
BstAUI	TGTACA	1 cut(s)	7
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	22
BstF5I	GGATG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	283
BstSFI	CTRYAG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	273
BstV2I	GAAGAC	1 cut(s)	272
BsuI	GTATCC	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	250
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	114
BveI	ACCTGC	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	207
Csp6I	GTAC	3 cut(s)	8, 82, 244
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	6 cut(s)	21, 33, 122, 186, 209, 286
CviKI_1	RGCY	6 cut(s)	21, 33, 122, 186, 209, 286
CviQI	GTAC	3 cut(s)	8, 82, 244
DdeI	CTNAG	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
FaeI	CATG	1 cut(s)	146
FaiI	YATR	8 cut(s)	6, 57, 59, 64, 144, 203, 205, 237
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FatI	CATG	1 cut(s)	142
FauNDI	CATATG	1 cut(s)	203
Fnu4HI	GCNGC	1 cut(s)	287
FokI	GGATG	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	287
GluI	GCNGC	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	209
Hin1II	CATG	1 cut(s)	146
HinfI	GANTC	1 cut(s)	71
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	2 cut(s)	25, 129
Hpy188III	TCNNGA	2 cut(s)	68, 190
Hpy8I	GTNNAC	1 cut(s)	139
HpyAV	CCTTC	2 cut(s)	140, 228
HpyCH4V	TGCA	3 cut(s)	95, 174, 262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	283
HpyF3I	CTNAG	1 cut(s)	22
Hsp92II	CATG	1 cut(s)	146
LguI	GCTCTTC	1 cut(s)	129
LpnPI	CCDG	3 cut(s)	99, 105, 223
Lsp1109I	GCAGC	1 cut(s)	273
MaeIII	GTNAC	2 cut(s)	109, 190
MboII	GAAGA	4 cut(s)	116, 239, 242, 277
MnlI	CCTC	1 cut(s)	91
MroXI	GAANNNNTTC	1 cut(s)	123
MseI	TTAA	2 cut(s)	282, 292
MwoI	GCNNNNNNNGC	1 cut(s)	283
NdeI	CATATG	1 cut(s)	203
NlaIII	CATG	1 cut(s)	146
NmuCI	GTSAC	2 cut(s)	109, 190
PciSI	GCTCTTC	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	207
PstI	CTGCAG	1 cut(s)	97
RsaI	GTAC	3 cut(s)	9, 83, 245
RsaNI	GTAC	3 cut(s)	8, 82, 244
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	2 cut(s)	282, 292
SatI	GCNGC	1 cut(s)	287
Sau96I	GGNCC	1 cut(s)	207
ScaI	AGTACT	1 cut(s)	83
SetI	ASST	6 cut(s)	35, 48, 94, 124, 165, 288
SfcI	CTRYAG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SsiI	CCGC	1 cut(s)	195
TatI	WGTACW	3 cut(s)	7, 81, 243
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	2 cut(s)	282, 292
Tru9I	TTAA	2 cut(s)	282, 292
TscAI	CASTG	1 cut(s)	114
TseFI	GTSAC	2 cut(s)	109, 190
TseI	GCWGC	1 cut(s)	286
Tsp45I	GTSAC	2 cut(s)	109, 190
TspDTI	ATGAA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	114
XmnI	GAANNNNTTC	1 cut(s)	123
ZrmI	AGTACT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.