Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005996.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

91188 .. 92947

Gene Structure 1760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atggaggaggccacgtttctcaccaagtatgggtctgaagttaacacaatccacaggagggacacgtttagggcttcgaagattatgcagaacagggctctcagtaaccctaaaatcaaagtgctttggaattctgaggtggtggaggcatatggggaaggaaagaaggggcttcttgcaggtttgaaggtgaagaatgttgtgactggggaagtgtctgatttgaaggtttccgggctcttcttcgcaattgctcacgagcctgtgactaagtttttggatgggcaattggagcttcttcctgatgggacaagaagtataggtaggctgttactgcttccggtactgggtgcatggcagctctggaagcagaacattacttgcaagagattggatcacaggagggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009941 GO:0009987 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051781 GO:0055114 GO:0065007 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00450 map00450

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

136

Amino Acids

15.32

Weight (kDa)

9.76

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox	PF00070	1 - 56	2.9e-09	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_2	PF07992	1 - 99	1.4e-08	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	170
AclWI	GGATC	1 cut(s)	402
AcsI	RAATTY	1 cut(s)	130
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	1 cut(s)	345
AfiI	CCNNNNNNNGG	3 cut(s)	30, 58, 347
AflIII	ACRYGT	1 cut(s)	63
AgsI	TTSAA	2 cut(s)	187, 226
AluBI	AGCT	2 cut(s)	295, 361
AluI	AGCT	2 cut(s)	295, 361
AlwI	GGATC	1 cut(s)	402
AoxI	GGCC	1 cut(s)	9
ApeKI	GCWGC	1 cut(s)	358
ApoI	RAATTY	1 cut(s)	130
ArsI	GACNNNNNNTTYG	2 cut(s)	259, 291
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	2 cut(s)	13, 202
AsuII	TTCGAA	1 cut(s)	77
BanII	GRGCYC	2 cut(s)	100, 240
BauI	CACGAG	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	2 cut(s)	275, 299
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BcnI	CCSGG	1 cut(s)	235
BfuAI	ACCTGC	1 cut(s)	170
BisI	GCNGC	1 cut(s)	359
BlsI	GCNGC	1 cut(s)	360
Bme1390I	CCNGG	1 cut(s)	235
BmrFI	CCNGG	1 cut(s)	235
BmrI	ACTGGG	2 cut(s)	216, 356
BmuI	ACTGGG	2 cut(s)	216, 356
Bpu14I	TTCGAA	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	235
BsaWI	WCCGGW	1 cut(s)	340
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 58, 347
Bse1I	ACTGG	2 cut(s)	211, 351
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	3 cut(s)	30, 58, 347
BseMII	CTCAG	2 cut(s)	115, 126
BseNI	ACTGG	2 cut(s)	211, 351
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	370
BshFI	GGCC	1 cut(s)	11
BsiSI	CCGG	2 cut(s)	234, 341
BslFI	GGGAC	2 cut(s)	74, 322
BslI	CCNNNNNNNGG	3 cut(s)	30, 58, 347
BsmFI	GGGAC	2 cut(s)	74, 322
BsnI	GGCC	1 cut(s)	11
Bsp119I	TTCGAA	1 cut(s)	77
Bsp1286I	GDGCHC	2 cut(s)	100, 240
Bsp143I	GATC	1 cut(s)	394
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	2 cut(s)	114, 127
BspMI	ACCTGC	1 cut(s)	170
BspPI	GGATC	1 cut(s)	402
BspQI	GCTCTTC	1 cut(s)	245
BspT104I	TTCGAA	1 cut(s)	77
BsrI	ACTGG	2 cut(s)	211, 351
BssMI	GATC	1 cut(s)	394
BssSI	CACGAG	1 cut(s)	257
Bst2BI	CACGAG	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	245
BstBI	TTCGAA	1 cut(s)	77
BstDEI	CTNAG	3 cut(s)	101, 135, 270
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	1 cut(s)	397
BstMBI	GATC	1 cut(s)	394
BstMWI	GCNNNNNNNGC	3 cut(s)	292, 334, 367
BstSCI	CCNGG	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	370
BsuRI	GGCC	1 cut(s)	11
BtsCI	GGATG	1 cut(s)	286
BveI	ACCTGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	1 cut(s)	354
CviJI	RGCY	9 cut(s)	11, 74, 98, 172, 238, 262, 295, 328, 361
CviKI_1	RGCY	9 cut(s)	11, 74, 98, 172, 238, 262, 295, 328, 361
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	3 cut(s)	101, 135, 270
DpnI	GATC	1 cut(s)	396
DpnII	GATC	1 cut(s)	394
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
Eco24I	GRGCYC	2 cut(s)	100, 240
Eco57I	CTGAAG	1 cut(s)	57
EcoRI	GAATTC	1 cut(s)	130
EcoT38I	GRGCYC	2 cut(s)	100, 240
FaeI	CATG	1 cut(s)	357
FaiI	YATR	7 cut(s)	30, 86, 151, 153, 320, 355, 409
FaqI	GGGAC	2 cut(s)	74, 322
FatI	CATG	1 cut(s)	353
FauNDI	CATATG	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	359
FokI	GGATG	1 cut(s)	293
FriOI	GRGCYC	2 cut(s)	100, 240
Fsp4HI	GCNGC	1 cut(s)	359
GluI	GCNGC	1 cut(s)	359
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	2 cut(s)	234, 341
Hin1II	CATG	1 cut(s)	357
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HpaI	GTTAAC	1 cut(s)	43
HpaII	CCGG	2 cut(s)	234, 341
HphI	GGTGA	2 cut(s)	13, 202
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	3 cut(s)	37, 136, 220
Hpy188III	TCNNGA	3 cut(s)	257, 302, 364
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	4 cut(s)	152, 160, 181, 220
HpyCH4IV	ACGT	2 cut(s)	14, 65
HpyCH4V	TGCA	4 cut(s)	88, 179, 353, 384
HpyF10VI	GCNNNNNNNGC	3 cut(s)	292, 334, 367
HpyF3I	CTNAG	3 cut(s)	101, 135, 270
HpySE526I	ACGT	2 cut(s)	14, 65
Hsp92II	CATG	1 cut(s)	357
KspAI	GTTAAC	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	394
LguI	GCTCTTC	1 cut(s)	245
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	1 cut(s)	370
MaeII	ACGT	2 cut(s)	14, 65
MaeIII	GTNAC	4 cut(s)	104, 202, 265, 330
MalI	GATC	1 cut(s)	396
MboI	GATC	1 cut(s)	394
MboII	GAAGA	5 cut(s)	91, 205, 232, 235, 290
MfeI	CAATTG	2 cut(s)	249, 287
MhlI	GDGCHC	2 cut(s)	100, 240
MluCI	AATT	3 cut(s)	130, 249, 287
MnlI	CCTC	4 cut(s)	51, 130, 139, 396
MseI	TTAA	1 cut(s)	42
MspI	CCGG	2 cut(s)	234, 341
MspR9I	CCNGG	1 cut(s)	235
MunI	CAATTG	2 cut(s)	249, 287
MwoI	GCNNNNNNNGC	3 cut(s)	292, 334, 367
NciI	CCSGG	1 cut(s)	235
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	1 cut(s)	394
NlaIII	CATG	1 cut(s)	357
NmuCI	GTSAC	2 cut(s)	202, 265
NspV	TTCGAA	1 cut(s)	77
PciSI	GCTCTTC	1 cut(s)	245
PkrI	GCNGC	1 cut(s)	360
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
SapI	GCTCTTC	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	1 cut(s)	359
Sau3AI	GATC	1 cut(s)	394
ScrFI	CCNGG	1 cut(s)	235
SduI	GDGCHC	2 cut(s)	100, 240
SetI	ASST	9 cut(s)	17, 68, 141, 184, 192, 231, 297, 325, 363
SfuI	TTCGAA	1 cut(s)	77
Sse9I	AATT	3 cut(s)	130, 249, 287
StyD4I	CCNGG	1 cut(s)	233
TaiI	ACGT	2 cut(s)	17, 68
TaqI	TCGA	1 cut(s)	77
TasI	AATT	3 cut(s)	130, 249, 287
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TseFI	GTSAC	2 cut(s)	202, 265
TseI	GCWGC	1 cut(s)	358
Tsp45I	GTSAC	2 cut(s)	202, 265
XapI	RAATTY	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.