Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005996.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

95428 .. 96221

Gene Structure 794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgctcacctccaaaccctctcactctcactctcactctccaagtcaaattctcaccgtcaacgacgacgacgacgccggcgctgacgtcatcttccctccgattccccacagctcctcctcccccgcgatcgccctcaaccacgatcgaaaagacccatctgcccccagatcatctccctccccgaccaaagtacccacctttatcgacctctccgacgacgagattcggattctccgattcaaacccaccaaaacccacttcaaaaagcgaagaacaaacccgtttacatccgggaaaacgaacccccaatccggtgccctgttcctgggtgaaaaggtctgctggagcccgagttctgccggctcaggtgtttgcgaggactgctctgcaatgctgatcgatgatggggaggaggtggtgagggagtcgcagtgcccgcattgtgggagaatgttttgtgctcagtgcaaggttgggatggattgcggcgagtttcagaagctgagtgtggatgagagagggaatcaagatgttatgttgaggaacctggcgcagagccagaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

189

Amino Acids

20.61

Weight (kDa)

6.14

Isoelectric Point (pI)

53.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	317
AccII	CGCG	1 cut(s)	128
AciI	CCGC	3 cut(s)	126, 440, 489
AcsI	RAATTY	1 cut(s)	48
AcyI	GRCGYC	2 cut(s)	75, 87
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	3 cut(s)	314, 328, 446
AgsI	TTSAA	2 cut(s)	244, 265
AjnI	CCWGG	2 cut(s)	327, 549
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AloI	GAACNNNNNNTCC	4 cut(s)	296, 328, 340, 372
AluBI	AGCT	2 cut(s)	114, 505
AluI	AGCT	2 cut(s)	114, 505
Alw21I	GWGCWC	1 cut(s)	466
AlwNI	CAGNNNCTG	1 cut(s)	505
Ama87I	CYCGRG	1 cut(s)	352
ApoI	RAATTY	1 cut(s)	48
AsiSI	GCGATCGC	1 cut(s)	132
AspLEI	GCGC	2 cut(s)	83, 556
AsuC2I	CCSGG	1 cut(s)	295
AsuHPI	GGTGA	3 cut(s)	46, 344, 433
AvaI	CYCGRG	1 cut(s)	352
BaeGI	GKGCMC	2 cut(s)	322, 440
BaeI	ACNNNNGTAYC	2 cut(s)	177, 210
BanI	GGYRCC	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	466
BccI	CCATC	3 cut(s)	166, 401, 475
BciT130I	CCWGG	2 cut(s)	329, 551
BcnI	CCSGG	1 cut(s)	295
BfaI	CTAG	1 cut(s)	568
BfoI	RGCGCY	1 cut(s)	84
BisI	GCNGC	1 cut(s)	490
BlsI	GCNGC	1 cut(s)	491
Bme1390I	CCNGG	3 cut(s)	295, 329, 551
BmeT110I	CYCGRG	1 cut(s)	352
BmiI	GGNNCC	3 cut(s)	319, 350, 548
BmrFI	CCNGG	3 cut(s)	295, 329, 551
BplI	GAGNNNNNCTC	2 cut(s)	371, 403
BpmI	CTGGAG	1 cut(s)	367
Bpu10I	CCTNAGC	1 cut(s)	367
BpuMI	CCSGG	1 cut(s)	295
Bsa29I	ATCGAT	1 cut(s)	402
BsaHI	GRCGYC	2 cut(s)	75, 87
BsaJI	CCNNGG	1 cut(s)	328
BsaWI	WCCGGW	1 cut(s)	314
BsaXI	ACNNNNNCTCC	6 cut(s)	101, 131, 340, 370, 419, 449
Bsc4I	CCNNNNNNNGG	3 cut(s)	314, 328, 446
Bse118I	RCCGGY	2 cut(s)	77, 362
Bse3DI	GCAATG	1 cut(s)	399
BseBI	CCWGG	2 cut(s)	329, 551
BseCI	ATCGAT	1 cut(s)	402
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	3 cut(s)	290, 486, 520
BseLI	CCNNNNNNNGG	3 cut(s)	314, 328, 446
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	3 cut(s)	381, 479, 497
BseRI	GAGGAG	3 cut(s)	106, 109, 428
BseSI	GKGCMC	2 cut(s)	322, 440
Bsh1236I	CGCG	1 cut(s)	128
Bsh1285I	CGRYCG	2 cut(s)	132, 148
BshNI	GGYRCC	1 cut(s)	317
BshVI	ATCGAT	1 cut(s)	402
BsiEI	CGRYCG	2 cut(s)	132, 148
BsiHKAI	GWGCWC	1 cut(s)	466
BsiHKCI	CYCGRG	1 cut(s)	352
BsiSI	CCGG	4 cut(s)	78, 294, 315, 363
BslI	CCNNNNNNNGG	3 cut(s)	314, 328, 446
BsoBI	CYCGRG	1 cut(s)	352
Bsp1286I	GDGCHC	4 cut(s)	322, 353, 440, 466
Bsp143I	GATC	4 cut(s)	129, 145, 170, 399
BspACI	CCGC	3 cut(s)	126, 440, 489
BspCNI	CTCAG	3 cut(s)	380, 478, 498
BspDI	ATCGAT	1 cut(s)	402
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	3 cut(s)	319, 350, 548
BspT107I	GGYRCC	1 cut(s)	317
BsrDI	GCAATG	1 cut(s)	399
BsrFI	RCCGGY	2 cut(s)	77, 362
BssAI	RCCGGY	2 cut(s)	77, 362
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	4 cut(s)	129, 145, 170, 399
BssNI	GRCGYC	2 cut(s)	75, 87
Bst2UI	CCWGG	2 cut(s)	329, 551
Bst4CI	ACNGT	1 cut(s)	58
BstACI	GRCGYC	2 cut(s)	75, 87
BstC8I	GCNNGC	3 cut(s)	79, 364, 440
BstDEI	CTNAG	3 cut(s)	367, 465, 506
BstF5I	GGATG	3 cut(s)	290, 486, 520
BstFNI	CGCG	1 cut(s)	128
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	2 cut(s)	83, 556
BstKTI	GATC	4 cut(s)	132, 148, 173, 402
BstMBI	GATC	4 cut(s)	129, 145, 170, 399
BstMCI	CGRYCG	2 cut(s)	132, 148
BstMWI	GCNNNNNNNGC	2 cut(s)	384, 439
BstNI	CCWGG	2 cut(s)	329, 551
BstSCI	CCNGG	3 cut(s)	293, 327, 549
BstSLI	GKGCMC	2 cut(s)	322, 440
BstUI	CGCG	1 cut(s)	128
Bsu15I	ATCGAT	1 cut(s)	402
BsuTUI	ATCGAT	1 cut(s)	402
BtsCI	GGATG	3 cut(s)	290, 486, 520
BtsI	GCAGTG	1 cut(s)	440
BtsIMutI	CAGTG	2 cut(s)	440, 473
Cac8I	GCNNGC	3 cut(s)	79, 364, 440
CaiI	CAGNNNCTG	1 cut(s)	505
CfoI	GCGC	2 cut(s)	83, 556
Cfr10I	RCCGGY	2 cut(s)	77, 362
ClaI	ATCGAT	1 cut(s)	402
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	194
CviJI	RGCY	5 cut(s)	114, 351, 366, 505, 561
CviKI_1	RGCY	5 cut(s)	114, 351, 366, 505, 561
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	3 cut(s)	367, 465, 506
DpnI	GATC	4 cut(s)	131, 147, 172, 401
DpnII	GATC	4 cut(s)	129, 145, 170, 399
Eco24I	GRGCYC	1 cut(s)	353
Eco88I	CYCGRG	1 cut(s)	352
EcoRII	CCWGG	2 cut(s)	327, 549
EcoT38I	GRGCYC	1 cut(s)	353
FaiI	YATR	1 cut(s)	539
FauI	CCCGC	2 cut(s)	133, 447
Fnu4HI	GCNGC	1 cut(s)	490
FokI	GGATG	3 cut(s)	277, 493, 527
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	1 cut(s)	490
FspBI	CTAG	1 cut(s)	568
GlaI	GCGC	2 cut(s)	82, 555
GluI	GCNGC	1 cut(s)	490
GsuI	CTGGAG	1 cut(s)	367
HaeII	RGCGCY	1 cut(s)	84
HapII	CCGG	4 cut(s)	78, 294, 315, 363
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	2 cut(s)	83, 556
Hin1I	GRCGYC	2 cut(s)	75, 87
Hin6I	GCGC	2 cut(s)	81, 554
HinP1I	GCGC	2 cut(s)	81, 554
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	6 cut(s)	103, 226, 232, 240, 428, 526
HpaII	CCGG	4 cut(s)	78, 294, 315, 363
HphI	GGTGA	3 cut(s)	46, 344, 433
Hpy166II	GTNNAC	2 cut(s)	61, 288
Hpy188I	TCNGA	5 cut(s)	102, 217, 231, 239, 501
Hpy188III	TCNNGA	1 cut(s)	530
Hpy8I	GTNNAC	2 cut(s)	61, 288
Hpy99I	CGWCG	6 cut(s)	68, 71, 74, 77, 221, 224
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	2 cut(s)	392, 471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	384, 439
HpyF3I	CTNAG	3 cut(s)	367, 465, 506
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	2 cut(s)	75, 87
HspAI	GCGC	2 cut(s)	81, 554
KroI	GCCGGC	2 cut(s)	77, 362
KroNI	GCCGGC	2 cut(s)	79, 364
Kzo9I	GATC	4 cut(s)	129, 145, 170, 399
LmnI	GCTCC	2 cut(s)	119, 348
MaeI	CTAG	1 cut(s)	568
MaeII	ACGT	1 cut(s)	87
MalI	GATC	4 cut(s)	131, 147, 172, 401
MboI	GATC	4 cut(s)	129, 145, 170, 399
MboII	GAAGA	2 cut(s)	85, 285
MhlI	GDGCHC	4 cut(s)	322, 353, 440, 466
MluCI	AATT	1 cut(s)	48
MlyI	GAGTC	1 cut(s)	437
MmeI	TCCRAC	1 cut(s)	240
MreI	CGCCGGCG	1 cut(s)	77
MroNI	GCCGGC	2 cut(s)	77, 362
MspI	CCGG	4 cut(s)	78, 294, 315, 363
MspR9I	CCNGG	3 cut(s)	295, 329, 551
MvaI	CCWGG	2 cut(s)	329, 551
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	384, 439
NaeI	GCCGGC	2 cut(s)	79, 364
NciI	CCSGG	1 cut(s)	295
NdeII	GATC	4 cut(s)	129, 145, 170, 399
NgoMIV	GCCGGC	2 cut(s)	77, 362
NlaIV	GGNNCC	3 cut(s)	319, 350, 548
PcsI	WCGNNNNNNNCGW	3 cut(s)	69, 213, 235
PdiI	GCCGGC	2 cut(s)	79, 364
PfeI	GAWTC	5 cut(s)	103, 226, 232, 240, 526
PfoI	TCCNGGA	1 cut(s)	293
PkrI	GCNGC	1 cut(s)	491
Ple19I	CGATCG	2 cut(s)	132, 148
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
Psp6I	CCWGG	2 cut(s)	327, 549
PspGI	CCWGG	2 cut(s)	327, 549
PspN4I	GGNNCC	3 cut(s)	319, 350, 548
PstNI	CAGNNNCTG	1 cut(s)	505
PvuI	CGATCG	2 cut(s)	132, 148
RgaI	GCGATCGC	1 cut(s)	132
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SatI	GCNGC	1 cut(s)	490
Sau3AI	GATC	4 cut(s)	129, 145, 170, 399
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	3 cut(s)	295, 329, 551
SduI	GDGCHC	4 cut(s)	322, 353, 440, 466
SfaAI	GCGATCGC	1 cut(s)	132
SgfI	GCGATCGC	1 cut(s)	132
SgrAI	CRCCGGYG	1 cut(s)	77
Sse9I	AATT	1 cut(s)	48
SsiI	CCGC	3 cut(s)	126, 440, 489
SspMI	CTAG	1 cut(s)	568
StyD4I	CCNGG	3 cut(s)	293, 327, 549
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	3 cut(s)	148, 207, 402
TasI	AATT	1 cut(s)	48
TauI	GCSGC	1 cut(s)	492
TfiI	GAWTC	5 cut(s)	103, 226, 232, 240, 526
TscAI	CASTG	2 cut(s)	440, 473
TspRI	CASTG	2 cut(s)	440, 473
XapI	RAATTY	1 cut(s)	48
XspI	CTAG	1 cut(s)	568
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.