Rmu_sc0006003.1_g000020

Protein odr-4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006003.1
N/A
Physical Location & Seq
Reverse (-)
65003 .. 69755
4753 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 636 bp
atggtcaggcccatggtttgctcaacccaatctccccaacccacttttcagacccaggatgatattatcacaagtctgcaaagtagactagatatcatctgtgatgaggcagatggagagacaggtccaattgacactggcatcgagaaagcaagagatgatgctgatagccaggaagtaggagatgggatatccagtgggacacccgtatcccaaattgtacttcaatcattaagaaaagcatgcggtctttcacttcctcgtcgagtctttattccttggttggctggcacatttgtgtgtgactacctacaaccatccgagacatttgaggttctaaaagatcgttgtgtggagttgttatctatggaagttccaacagatgcctcaaaaatcttggaaccagaaagagaagccccctctgcagtcaccaaatccttttgggatgtggcggtgcctctttccacagcatctagctcctgtttggaaaagggtggacttgacgcatcaaggggtgaaagtagccaaaaatcaactgacaccaccgatgccaaaatcactcctaacatcatagctgctgctgtattccttatcatggctatcattgtaggatacattctagtatctgtcaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ODR4-like

Protein Analysis

211

Amino Acids

22.66

Weight (kDa)

4.42

Isoelectric Point (pI)

54.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ODR4-like PF14778 20 - 131 9.5e-21 Odorant response abnormal 4-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 454
AccI GTMKAC 1 cut(s) 85
AciI CCGC 2 cut(s) 246, 452
AfaI GTAC 1 cut(s) 222
AfiI CCNNNNNNNGG 1 cut(s) 595
AgsI TTSAA 1 cut(s) 227
AjnI CCWGG 2 cut(s) 54, 171
AjuI GAANNNNNNNTTGG 4 cut(s) 30, 62, 207, 239
AleI CACNNNNGTG 1 cut(s) 296
AluBI AGCT 2 cut(s) 477, 575
AluI AGCT 2 cut(s) 477, 575
Alw26I GTCTC 2 cut(s) 113, 317
AoxI GGCC 1 cut(s) 8
ApeKI GCWGC 2 cut(s) 575, 578
AspS9I GGNCC 2 cut(s) 9, 125
AsuHPI GGTGA 2 cut(s) 421, 527
AvaII GGWCC 1 cut(s) 125
BaeI ACNNNNGTAYC 2 cut(s) 192, 225
BanI GGYRCC 1 cut(s) 454
BbvI GCAGC 2 cut(s) 562, 565
BccI CCATC 3 cut(s) 107, 179, 325
BciT130I CCWGG 2 cut(s) 56, 173
BciVI GTATCC 2 cut(s) 220, 605
BcoDI GTCTC 2 cut(s) 113, 317
BfaI CTAG 3 cut(s) 89, 474, 620
BfmI CTRYAG 1 cut(s) 423
BfuI GTATCC 2 cut(s) 220, 605
BisI GCNGC 2 cut(s) 576, 579
BlsI GCNGC 2 cut(s) 577, 580
Bme1390I CCNGG 2 cut(s) 56, 173
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 2 cut(s) 9, 125
BmiI GGNNCC 2 cut(s) 402, 456
BmrFI CCNGG 2 cut(s) 56, 173
BmsI GCATC 6 cut(s) 150, 151, 373, 479, 515, 538
BsaJI CCNNGG 3 cut(s) 12, 54, 278
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
Bsc4I CCNNNNNNNGG 1 cut(s) 595
Bse1I ACTGG 2 cut(s) 142, 195
BseBI CCWGG 2 cut(s) 56, 173
BseDI CCNNGG 3 cut(s) 12, 54, 278
BseGI GGATG 3 cut(s) 64, 317, 451
BseLI CCNNNNNNNGG 1 cut(s) 595
BseNI ACTGG 2 cut(s) 142, 195
BseXI GCAGC 2 cut(s) 562, 565
BshFI GGCC 1 cut(s) 10
BshNI GGYRCC 1 cut(s) 454
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 595
BsmAI GTCTC 2 cut(s) 113, 317
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 1 cut(s) 10
Bsp143I GATC 1 cut(s) 343
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 2 cut(s) 246, 452
BspANI GGCC 1 cut(s) 10
BspLI GGNNCC 2 cut(s) 402, 456
BspMAI CTGCAG 1 cut(s) 427
BspT107I GGYRCC 1 cut(s) 454
BsrI ACTGG 2 cut(s) 142, 195
BssECI CCNNGG 3 cut(s) 12, 54, 278
BssMI GATC 1 cut(s) 343
BssT1I CCWWGG 2 cut(s) 12, 278
Bst2UI CCWGG 2 cut(s) 56, 173
BstC8I GCNNGC 2 cut(s) 244, 289
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 3 cut(s) 64, 317, 451
BstKTI GATC 1 cut(s) 346
BstMAI GTCTC 2 cut(s) 113, 317
BstMBI GATC 1 cut(s) 343
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstNI CCWGG 2 cut(s) 56, 173
BstNSI RCATGY 1 cut(s) 246
BstSCI CCNGG 2 cut(s) 54, 171
BstSFI CTRYAG 1 cut(s) 423
BstV1I GCAGC 2 cut(s) 562, 565
BsuI GTATCC 2 cut(s) 220, 605
BsuRI GGCC 1 cut(s) 10
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 3 cut(s) 64, 317, 451
BtsIMutI CAGTG 2 cut(s) 135, 202
Cac8I GCNNGC 2 cut(s) 244, 289
Cfr13I GGNCC 2 cut(s) 9, 125
CseI GACGC 1 cut(s) 512
Csp6I GTAC 1 cut(s) 221
CviAII CATG 3 cut(s) 13, 243, 595
CviJI RGCY 8 cut(s) 10, 171, 287, 416, 477, 525, 575, 599
CviKI_1 RGCY 8 cut(s) 10, 171, 287, 416, 477, 525, 575, 599
CviQI GTAC 1 cut(s) 221
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
Eco130I CCWWGG 2 cut(s) 12, 278
Eco32I GATATC 2 cut(s) 94, 192
Eco47I GGWCC 1 cut(s) 125
EcoRII CCWGG 2 cut(s) 54, 171
EcoRV GATATC 2 cut(s) 94, 192
EcoT14I CCWWGG 2 cut(s) 12, 278
ErhI CCWWGG 2 cut(s) 12, 278
FaeI CATG 3 cut(s) 16, 246, 598
FaiI YATR 5 cut(s) 14, 244, 368, 572, 596
FaqI GGGAC 1 cut(s) 214
FatI CATG 3 cut(s) 12, 242, 594
FblI GTMKAC 1 cut(s) 85
Fnu4HI GCNGC 2 cut(s) 576, 579
FokI GGATG 3 cut(s) 71, 304, 458
Fsp4HI GCNGC 2 cut(s) 576, 579
FspBI CTAG 3 cut(s) 89, 474, 620
GluI GCNGC 2 cut(s) 576, 579
HaeIII GGCC 1 cut(s) 10
HgaI GACGC 1 cut(s) 512
Hin1II CATG 3 cut(s) 16, 246, 598
HinfI GANTC 1 cut(s) 267
HphI GGTGA 2 cut(s) 421, 527
Hpy166II GTNNAC 2 cut(s) 86, 497
Hpy188I TCNGA 2 cut(s) 51, 322
Hpy188III TCNNGA 1 cut(s) 145
Hpy8I GTNNAC 2 cut(s) 86, 497
Hpy99I CGWCG 1 cut(s) 267
HpyCH4V TGCA 2 cut(s) 79, 425
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
Hsp92II CATG 3 cut(s) 16, 246, 598
Kzo9I GATC 1 cut(s) 343
LmnI GCTCC 1 cut(s) 482
Lsp1109I GCAGC 2 cut(s) 562, 565
LweI GCATC 6 cut(s) 150, 151, 373, 479, 515, 538
MaeI CTAG 3 cut(s) 89, 474, 620
MaeIII GTNAC 2 cut(s) 302, 427
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MfeI CAATTG 1 cut(s) 129
MluCI AATT 2 cut(s) 129, 216
MlyI GAGTC 1 cut(s) 276
MmeI TCCRAC 1 cut(s) 401
MnlI CCTC 6 cut(s) 100, 270, 325, 397, 430, 468
MseI TTAA 1 cut(s) 233
MslI CAYNNNNRTG 2 cut(s) 296, 298
MspR9I CCNGG 2 cut(s) 56, 173
MunI CAATTG 1 cut(s) 129
MvaI CCWGG 2 cut(s) 56, 173
MwoI GCNNNNNNNGC 1 cut(s) 422
NcoI CCATGG 1 cut(s) 12
NdeII GATC 1 cut(s) 343
NlaIII CATG 3 cut(s) 16, 246, 598
NlaIV GGNNCC 2 cut(s) 402, 456
NmuCI GTSAC 2 cut(s) 302, 427
NspI RCATGY 1 cut(s) 246
OliI CACNNNNGTG 1 cut(s) 296
PaeI GCATGC 1 cut(s) 246
PkrI GCNGC 2 cut(s) 577, 580
PleI GAGTC 1 cut(s) 275
PpsI GAGTC 1 cut(s) 275
Psp6I CCWGG 2 cut(s) 54, 171
PspGI CCWGG 2 cut(s) 54, 171
PspN4I GGNNCC 2 cut(s) 402, 456
PspPI GGNCC 2 cut(s) 9, 125
PstI CTGCAG 1 cut(s) 427
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
RseI CAYNNNNRTG 2 cut(s) 296, 298
SaqAI TTAA 1 cut(s) 233
SatI GCNGC 2 cut(s) 576, 579
Sau3AI GATC 1 cut(s) 343
Sau96I GGNCC 2 cut(s) 9, 125
SchI GAGTC 1 cut(s) 276
ScrFI CCNGG 2 cut(s) 56, 173
SetI ASST 5 cut(s) 127, 312, 336, 479, 577
SfaNI GCATC 6 cut(s) 150, 151, 373, 479, 515, 538
SfcI CTRYAG 1 cut(s) 423
SinI GGWCC 1 cut(s) 125
SmiMI CAYNNNNRTG 2 cut(s) 296, 298
SphI GCATGC 1 cut(s) 246
Sse9I AATT 2 cut(s) 129, 216
SsiI CCGC 2 cut(s) 246, 452
SspMI CTAG 3 cut(s) 89, 474, 620
StyD4I CCNGG 2 cut(s) 54, 171
StyI CCWWGG 2 cut(s) 12, 278
TaqI TCGA 2 cut(s) 144, 265
TasI AATT 2 cut(s) 129, 216
TatI WGTACW 1 cut(s) 220
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TscAI CASTG 2 cut(s) 142, 202
TseFI GTSAC 2 cut(s) 302, 427
TseI GCWGC 2 cut(s) 575, 578
Tsp45I GTSAC 2 cut(s) 302, 427
TspRI CASTG 2 cut(s) 142, 202
VpaK11BI GGWCC 1 cut(s) 125
XceI RCATGY 1 cut(s) 246
XmiI GTMKAC 1 cut(s) 85
XspI CTAG 3 cut(s) 89, 474, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.