Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006020.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

43684 .. 47960

Gene Structure 4277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atggtgatgtggcaccgacaggcaaacccacttttcagtctttcaatccacaagaagggcaaaatgggcattgccacccttcctgatgaaatcaatccatttttgcttctgggtttctgtatgagagctcaagccgctcatccaccacacttctctaagcaccaccgcgactcacctccaccaccatcacgctccctggtctccaacgagtcaaaaccagaattgatttggacacccacatctaacttctctcaaatatttctcaaccaattcgctgtgagtggaagtgcatcagtggcttctggtacaacggtggttgctgggtcaagtcaaggctgccttgatgggcctcggttgggtcactcctctttgggctgccttttgggtttctatggtgggcttggcaggctacttcatccaaagggcagtagtgttcttctaagtcgtttaggcctcggacgcaaccccaaagtctgggaaaacccgttgagattagaccccgagcgtaatctaagtggagatgccagtcaacaagtagagctggaagaacgtgatctgaggttcatttcatttactactggaaggagaggttgcattggtggtacgcttgggactaccataactgtgatgctccttgctaggcttcttcaagggtttacatggagcatgccacccaaggtggataagattgacctcactgaggctccaacccttttcaagctcaatccattgaatgcacatgctaaacctcgcttgcctgctgctatgtacccgatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016137 GO:0016138 GO:0016491 GO:0018130 GO:0019438 GO:0019748 GO:0019752 GO:0019756 GO:0032787 GO:0034641 GO:0034754 GO:0042341 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0046483 GO:0050896 GO:0050898 GO:0051704 GO:0051707 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080028 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00460 ko00966 ko01110 ko01210 map00460 map00966 map01110 map01210

Pfam Domains

Protein Families

p450

Protein Analysis

259

Amino Acids

28.21

Weight (kDa)

9.85

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	140 - 245	1.3e-17	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	12
AccB7I	CCANNNNNTGG	1 cut(s)	474
AccBSI	CCGCTC	1 cut(s)	137
AccII	CGCG	1 cut(s)	168
AciI	CCGC	2 cut(s)	135, 166
AfaI	GTAC	3 cut(s)	307, 604, 770
AfiI	CCNNNNNNNGG	4 cut(s)	55, 356, 474, 700
AgsI	TTSAA	4 cut(s)	45, 650, 718, 733
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	3 cut(s)	128, 541, 721
AluI	AGCT	3 cut(s)	128, 541, 721
Alw21I	GWGCWC	1 cut(s)	130
Alw26I	GTCTC	1 cut(s)	205
Ama87I	CYCGRG	1 cut(s)	500
AoxI	GGCC	2 cut(s)	347, 451
ApeKI	GCWGC	3 cut(s)	336, 375, 761
AspS9I	GGNCC	1 cut(s)	347
AsuHPI	GGTGA	2 cut(s)	16, 165
AvaI	CYCGRG	1 cut(s)	500
BaeI	ACNNNNGTAYC	2 cut(s)	297, 330
BanI	GGYRCC	1 cut(s)	12
BanII	GRGCYC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	130
BbvI	GCAGC	3 cut(s)	323, 362, 748
BccI	CCATC	2 cut(s)	193, 338
BciT130I	CCWGG	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	1 cut(s)	639
BisI	GCNGC	4 cut(s)	135, 337, 376, 762
BlsI	GCNGC	4 cut(s)	136, 338, 377, 763
Bme1390I	CCNGG	1 cut(s)	197
BmeT110I	CYCGRG	1 cut(s)	500
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	2 cut(s)	14, 705
BmrFI	CCNGG	1 cut(s)	197
BmsI	GCATC	3 cut(s)	299, 511, 618
BpuEI	CTTGAG	1 cut(s)	114
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	4 cut(s)	195, 350, 454, 675
BsaXI	ACNNNNNCTCC	2 cut(s)	688, 718
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 356, 474, 700
Bse1I	ACTGG	2 cut(s)	525, 583
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	4 cut(s)	195, 350, 454, 675
BseGI	GGATG	2 cut(s)	139, 415
BseLI	CCNNNNNNNGG	4 cut(s)	55, 356, 474, 700
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	2 cut(s)	548, 690
BseNI	ACTGG	2 cut(s)	525, 583
BseRI	GAGGAG	1 cut(s)	355
BseXI	GCAGC	3 cut(s)	323, 362, 748
BseYI	CCCAGC	1 cut(s)	320
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	349, 453
BshNI	GGYRCC	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	130
BsiHKCI	CYCGRG	1 cut(s)	500
BslFI	GGGAC	1 cut(s)	625
BslI	CCNNNNNNNGG	4 cut(s)	55, 356, 474, 700
BsmAI	GTCTC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	625
BsmI	GAATGC	1 cut(s)	739
BsnI	GGCC	2 cut(s)	349, 453
Bso31I	GGTCTC	1 cut(s)	205
BsoBI	CYCGRG	1 cut(s)	500
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp143I	GATC	1 cut(s)	553
BspACI	CCGC	2 cut(s)	135, 166
BspANI	GGCC	2 cut(s)	349, 453
BspCNI	CTCAG	2 cut(s)	549, 691
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	14, 705
BspT107I	GGYRCC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	205
BsrBI	CCGCTC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	2 cut(s)	525, 583
BssECI	CCNNGG	4 cut(s)	195, 350, 454, 675
BssMI	GATC	1 cut(s)	553
BssT1I	CCWWGG	1 cut(s)	675
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	2 cut(s)	313, 625
BstC8I	GCNNGC	4 cut(s)	407, 668, 755, 759
BstDEI	CTNAG	5 cut(s)	156, 440, 512, 557, 699
BstENI	CCTNNNNNAGG	1 cut(s)	698
BstF5I	GGATG	2 cut(s)	139, 415
BstFNI	CGCG	1 cut(s)	168
BstKTI	GATC	1 cut(s)	556
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	553
BstMWI	GCNNNNNNNGC	5 cut(s)	66, 134, 296, 406, 459
BstNI	CCWGG	1 cut(s)	197
BstNSI	RCATGY	2 cut(s)	670, 743
BstSCI	CCNGG	1 cut(s)	195
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	3 cut(s)	323, 362, 748
BsuRI	GGCC	2 cut(s)	349, 453
BtsCI	GGATG	2 cut(s)	139, 415
BtsIMutI	CAGTG	2 cut(s)	300, 696
Cac8I	GCNNGC	4 cut(s)	407, 668, 755, 759
Cfr13I	GGNCC	1 cut(s)	347
CseI	GACGC	1 cut(s)	468
Csp6I	GTAC	3 cut(s)	306, 603, 769
CviAII	CATG	3 cut(s)	660, 667, 740
CviQI	GTAC	3 cut(s)	306, 603, 769
DdeI	CTNAG	5 cut(s)	156, 440, 512, 557, 699
DpnI	GATC	1 cut(s)	555
DpnII	GATC	1 cut(s)	553
Ecl136II	GAGCTC	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	675
Eco147I	AGGCCT	1 cut(s)	453
Eco24I	GRGCYC	1 cut(s)	130
Eco31I	GGTCTC	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	128
Eco88I	CYCGRG	1 cut(s)	500
EcoICRI	GAGCTC	1 cut(s)	128
EcoNI	CCTNNNNNAGG	1 cut(s)	698
EcoRII	CCWGG	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	675
EcoT38I	GRGCYC	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	675
FaeI	CATG	3 cut(s)	663, 670, 743
FaiI	YATR	7 cut(s)	122, 393, 620, 661, 668, 741, 767
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FaqI	GGGAC	1 cut(s)	625
FatI	CATG	3 cut(s)	659, 666, 739
Fnu4HI	GCNGC	4 cut(s)	135, 337, 376, 762
FokI	GGATG	2 cut(s)	126, 402
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	4 cut(s)	135, 337, 376, 762
FspBI	CTAG	1 cut(s)	639
GluI	GCNGC	4 cut(s)	135, 337, 376, 762
GsaI	CCCAGC	1 cut(s)	324
HaeIII	GGCC	2 cut(s)	349, 453
HgaI	GACGC	1 cut(s)	468
Hin1II	CATG	3 cut(s)	663, 670, 743
HincII	GTYRAC	1 cut(s)	530
HindII	GTYRAC	1 cut(s)	530
HinfI	GANTC	2 cut(s)	170, 209
HphI	GGTGA	2 cut(s)	16, 165
Hpy166II	GTNNAC	2 cut(s)	530, 657
Hpy188I	TCNGA	2 cut(s)	458, 558
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	2 cut(s)	530, 657
HpyAV	CCTTC	3 cut(s)	49, 89, 576
HpyCH4III	ACNGT	2 cut(s)	313, 625
HpyCH4IV	ACGT	1 cut(s)	550
HpyCH4V	TGCA	3 cut(s)	290, 594, 737
HpyF10VI	GCNNNNNNNGC	5 cut(s)	66, 134, 296, 406, 459
HpyF3I	CTNAG	5 cut(s)	156, 440, 512, 557, 699
HpySE526I	ACGT	1 cut(s)	550
Hsp92II	CATG	3 cut(s)	663, 670, 743
Kzo9I	GATC	1 cut(s)	553
LmnI	GCTCC	4 cut(s)	197, 636, 663, 709
Lsp1109I	GCAGC	3 cut(s)	323, 362, 748
LweI	GCATC	3 cut(s)	299, 511, 618
MaeI	CTAG	1 cut(s)	639
MaeII	ACGT	1 cut(s)	550
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	1 cut(s)	555
MbiI	CCGCTC	1 cut(s)	137
MboI	GATC	1 cut(s)	553
MboII	GAAGA	3 cut(s)	428, 557, 638
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	2 cut(s)	221, 269
MlyI	GAGTC	2 cut(s)	164, 218
MmeI	TCCRAC	2 cut(s)	228, 731
MnlI	CCTC	9 cut(s)	186, 360, 376, 464, 552, 581, 694, 704, 759
MslI	CAYNNNNRTG	1 cut(s)	623
MspR9I	CCNGG	1 cut(s)	197
Mva1269I	GAATGC	1 cut(s)	739
MvaI	CCWGG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	5 cut(s)	66, 134, 296, 406, 459
NdeII	GATC	1 cut(s)	553
NlaIII	CATG	3 cut(s)	663, 670, 743
NlaIV	GGNNCC	2 cut(s)	14, 705
NmuCI	GTSAC	1 cut(s)	359
NspI	RCATGY	2 cut(s)	670, 743
PaeI	GCATGC	1 cut(s)	670
PceI	AGGCCT	1 cut(s)	453
PctI	GAATGC	1 cut(s)	739
PflMI	CCANNNNNTGG	1 cut(s)	474
PkrI	GCNGC	4 cut(s)	136, 338, 377, 763
PleI	GAGTC	2 cut(s)	164, 217
PpsI	GAGTC	2 cut(s)	164, 217
Psp124BI	GAGCTC	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	195
PspFI	CCCAGC	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	14, 705
PspPI	GGNCC	1 cut(s)	347
RsaI	GTAC	3 cut(s)	307, 604, 770
RsaNI	GTAC	3 cut(s)	306, 603, 769
RseI	CAYNNNNRTG	1 cut(s)	623
SacI	GAGCTC	1 cut(s)	130
SatI	GCNGC	4 cut(s)	135, 337, 376, 762
Sau3AI	GATC	1 cut(s)	553
Sau96I	GGNCC	1 cut(s)	347
SchI	GAGTC	2 cut(s)	164, 218
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	130
SfaNI	GCATC	3 cut(s)	299, 511, 618
SmiMI	CAYNNNNRTG	1 cut(s)	623
SmlI	CTYRAG	1 cut(s)	129
SmoI	CTYRAG	1 cut(s)	129
SphI	GCATGC	1 cut(s)	670
Sse9I	AATT	2 cut(s)	221, 269
SseBI	AGGCCT	1 cut(s)	453
SsiI	CCGC	2 cut(s)	135, 166
SspI	AATATT	1 cut(s)	258
SspMI	CTAG	1 cut(s)	639
SstI	GAGCTC	1 cut(s)	130
StuI	AGGCCT	1 cut(s)	453
StyD4I	CCNGG	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	675
TaaI	ACNGT	2 cut(s)	313, 625
TaiI	ACGT	1 cut(s)	553
TasI	AATT	2 cut(s)	221, 269
TauI	GCSGC	1 cut(s)	137
TscAI	CASTG	2 cut(s)	300, 703
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	3 cut(s)	336, 375, 761
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	4 cut(s)	102, 404, 553, 558
TspRI	CASTG	2 cut(s)	300, 703
Van91I	CCANNNNNTGG	1 cut(s)	474
XagI	CCTNNNNNAGG	1 cut(s)	698
XceI	RCATGY	2 cut(s)	670, 743
XcmI	CCANNNNNNNNNTGG	1 cut(s)	225
XspI	CTAG	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.