Rmu_sc0006028.1_g000020

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006028.1
N/A
Physical Location & Seq
Forward (+)
79332 .. 79748
417 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 363 bp
atgatggacgccatccatggagtcatggatagggactacgccagccctaggctggtggtggacggaggtggtgccctaggcacggcgtacggggcaacacaatgtggaaattccattgtgaatttgctggaaccaaaggtgtcgaccaacaggagaggcactaagcgtagcgaagtggaagaaagaggctttccgcgaggaaagatttttttatggcgctgttcgtggggtattcttcctacctttgacaattttgtacagcgtcgtgtggcttcctctagtttgtgtttcaggtgtcatgttaatactgaaacggtttttcatgcaatccgggagtgtgttaattctgtcggtcacacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

120

Amino Acids

13.32

Weight (kDa)

9.01

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 64 - 114 4.2e-08 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AccI GTMKAC 1 cut(s) 143
AccII CGCG 1 cut(s) 196
AciI CCGC 1 cut(s) 194
AcsI RAATTY 2 cut(s) 109, 121
AcyI GRCGYC 1 cut(s) 9
AdeI CACNNNGTG 1 cut(s) 104
AfaI GTAC 2 cut(s) 89, 258
AfiI CCNNNNNNNGG 3 cut(s) 48, 52, 82
ApoI RAATTY 2 cut(s) 109, 121
AspA2I CCTAGG 2 cut(s) 47, 76
AspLEI GCGC 1 cut(s) 219
AsuC2I CCSGG 1 cut(s) 332
AvrII CCTAGG 2 cut(s) 47, 76
BaeGI GKGCMC 1 cut(s) 76
BanI GGYRCC 1 cut(s) 71
BccI CCATC 1 cut(s) 20
BceAI ACGGC 1 cut(s) 99
BcnI CCSGG 1 cut(s) 332
BfaI CTAG 3 cut(s) 48, 77, 279
BfoI RGCGCY 1 cut(s) 220
BlnI CCTAGG 2 cut(s) 47, 76
Bme1390I CCNGG 1 cut(s) 332
BmiI GGNNCC 2 cut(s) 73, 132
BmrFI CCNGG 1 cut(s) 332
BpuMI CCSGG 1 cut(s) 332
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 3 cut(s) 16, 47, 76
Bsc4I CCNNNNNNNGG 3 cut(s) 48, 52, 82
BseDI CCNNGG 3 cut(s) 16, 47, 76
BseGI GGATG 1 cut(s) 12
BseLI CCNNNNNNNGG 3 cut(s) 48, 52, 82
BseSI GKGCMC 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 196
BshNI GGYRCC 1 cut(s) 71
BsiSI CCGG 1 cut(s) 331
BsiWI CGTACG 1 cut(s) 87
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 3 cut(s) 48, 52, 82
BsmFI GGGAC 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 76
Bsp1407I TGTACA 1 cut(s) 256
Bsp19I CCATGG 1 cut(s) 16
BspACI CCGC 1 cut(s) 194
BspFNI CGCG 1 cut(s) 196
BspLI GGNNCC 2 cut(s) 73, 132
BspT107I GGYRCC 1 cut(s) 71
BsrGI TGTACA 1 cut(s) 256
BssECI CCNNGG 3 cut(s) 16, 47, 76
BssNI GRCGYC 1 cut(s) 9
BssT1I CCWWGG 3 cut(s) 16, 47, 76
Bst4CI ACNGT 1 cut(s) 316
BstACI GRCGYC 1 cut(s) 9
BstAUI TGTACA 1 cut(s) 256
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 2 cut(s) 162, 360
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 1 cut(s) 12
BstFNI CGCG 1 cut(s) 196
BstH2I RGCGCY 1 cut(s) 220
BstHHI GCGC 1 cut(s) 219
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 330
BstSLI GKGCMC 1 cut(s) 76
BstUI CGCG 1 cut(s) 196
BtgI CCRYGG 1 cut(s) 16
BtsCI GGATG 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 43
CfoI GCGC 1 cut(s) 219
CseI GACGC 2 cut(s) 17, 251
Csp6I GTAC 2 cut(s) 88, 257
CviAII CATG 4 cut(s) 17, 25, 299, 323
CviJI RGCY 4 cut(s) 45, 52, 189, 272
CviKI_1 RGCY 4 cut(s) 45, 52, 189, 272
CviQI GTAC 2 cut(s) 88, 257
DdeI CTNAG 2 cut(s) 162, 360
DraIII CACNNNGTG 1 cut(s) 104
Eco130I CCWWGG 3 cut(s) 16, 47, 76
EcoT14I CCWWGG 3 cut(s) 16, 47, 76
ErhI CCWWGG 3 cut(s) 16, 47, 76
FaeI CATG 4 cut(s) 20, 28, 302, 326
FaiI YATR 5 cut(s) 18, 26, 214, 300, 324
FaqI GGGAC 1 cut(s) 47
FatI CATG 4 cut(s) 16, 24, 298, 322
FblI GTMKAC 1 cut(s) 143
FspBI CTAG 3 cut(s) 48, 77, 279
GlaI GCGC 1 cut(s) 218
HaeII RGCGCY 1 cut(s) 220
HapII CCGG 1 cut(s) 331
HgaI GACGC 2 cut(s) 17, 251
HhaI GCGC 1 cut(s) 219
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 4 cut(s) 20, 28, 302, 326
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 1 cut(s) 21
HpaII CCGG 1 cut(s) 331
Hpy166II GTNNAC 2 cut(s) 61, 144
Hpy8I GTNNAC 2 cut(s) 61, 144
Hpy99I CGWCG 1 cut(s) 267
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4V TGCA 1 cut(s) 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 162, 360
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 4 cut(s) 20, 28, 302, 326
HspAI GCGC 1 cut(s) 217
LpnPI CCDG 6 cut(s) 38, 55, 113, 136, 277, 344
MaeI CTAG 3 cut(s) 48, 77, 279
MaeIII GTNAC 1 cut(s) 353
MboII GAAGA 2 cut(s) 191, 227
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 4 cut(s) 109, 121, 250, 343
MlyI GAGTC 1 cut(s) 30
MnlI CCTC 5 cut(s) 59, 149, 179, 191, 286
MseI TTAA 2 cut(s) 303, 342
MspI CCGG 1 cut(s) 331
MspR9I CCNGG 1 cut(s) 332
MvnI CGCG 1 cut(s) 196
MwoI GCNNNNNNNGC 1 cut(s) 92
NciI CCSGG 1 cut(s) 332
NcoI CCATGG 1 cut(s) 16
NlaIII CATG 4 cut(s) 20, 28, 302, 326
NlaIV GGNNCC 2 cut(s) 73, 132
NmuCI GTSAC 1 cut(s) 353
Pfl23II CGTACG 1 cut(s) 87
PfoI TCCNGGA 1 cut(s) 330
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
PspLI CGTACG 1 cut(s) 87
PspN4I GGNNCC 2 cut(s) 73, 132
RsaI GTAC 2 cut(s) 89, 258
RsaNI GTAC 2 cut(s) 88, 257
SalI GTCGAC 1 cut(s) 142
SaqAI TTAA 2 cut(s) 303, 342
SchI GAGTC 1 cut(s) 30
ScrFI CCNGG 1 cut(s) 332
SduI GDGCHC 1 cut(s) 76
SetI ASST 4 cut(s) 70, 141, 245, 296
Sse9I AATT 4 cut(s) 109, 121, 250, 343
SsiI CCGC 1 cut(s) 194
SspMI CTAG 3 cut(s) 48, 77, 279
StyD4I CCNGG 1 cut(s) 330
StyI CCWWGG 3 cut(s) 16, 47, 76
TaaI ACNGT 1 cut(s) 316
TaqI TCGA 1 cut(s) 143
TaqII GACCGA 1 cut(s) 341
TasI AATT 4 cut(s) 109, 121, 250, 343
TatI WGTACW 1 cut(s) 256
Tru1I TTAA 2 cut(s) 303, 342
Tru9I TTAA 2 cut(s) 303, 342
TseFI GTSAC 1 cut(s) 353
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 1 cut(s) 311
TspGWI ACGGA 1 cut(s) 78
XapI RAATTY 2 cut(s) 109, 121
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XmaJI CCTAGG 2 cut(s) 47, 76
XmiI GTMKAC 1 cut(s) 143
XspI CTAG 3 cut(s) 48, 77, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.