Rmu_sc0006050.1_g000028

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006050.1
N/A
Physical Location & Seq
Forward (+)
78188 .. 78732
545 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 459 bp
atggctggagatccagatattcttagtgacttcattgcgtctccaaatggaacagtagatggaaacttcttcacatacaccggcatgcgtgttgtctttgaagaacatgagcccaaaaacttcacagttctgaaggcaacctccgctgagttccctgcccttaatggtcagagtgtttcatatgcagtacttctggcactactaacccacctcacactcatcctcgctctgatgagctcctcttccttgttgacgggacttgttcactaccagtacaatgccgattcacaaaactcggctacagaaatttctgcttttggaagtgcaagtgcaggaactgtgtcaattccttccactttgttcgccaccaacgtcgatgacaatgccttggctttgtccttcaagactgatgtagctacaattcaacagcttaaggctggtctcgctcccaagctatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

152

Amino Acids

15.99

Weight (kDa)

4.57

Isoelectric Point (pI)

28.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 144
AclWI GGATC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 306
AcuI CTGAAG 1 cut(s) 152
AfaI GTAC 2 cut(s) 189, 275
AflII CTTAAG 1 cut(s) 431
AgsI TTSAA 3 cut(s) 101, 403, 425
AluBI AGCT 4 cut(s) 237, 416, 430, 454
AluI AGCT 4 cut(s) 237, 416, 430, 454
Alw21I GWGCWC 1 cut(s) 239
Alw26I GTCTC 2 cut(s) 45, 446
AlwI GGATC 1 cut(s) 5
AlwNI CAGNNNCTG 1 cut(s) 338
ApoI RAATTY 1 cut(s) 306
BanII GRGCYC 2 cut(s) 114, 239
Bbv12I GWGCWC 1 cut(s) 239
BccI CCATC 1 cut(s) 53
BcgI CGANNNNNNTGC 2 cut(s) 365, 399
BcoDI GTCTC 2 cut(s) 45, 446
BfmI CTRYAG 1 cut(s) 300
BfrI CTTAAG 1 cut(s) 431
BmcAI AGTACT 1 cut(s) 189
BpmI CTGGAG 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 387
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 271
Bse3DI GCAATG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 387
BseGI GGATG 1 cut(s) 219
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 271
BseRI GAGGAG 1 cut(s) 229
BsgI GTGCAG 1 cut(s) 351
BsiHKAI GWGCWC 1 cut(s) 239
BsiSI CCGG 1 cut(s) 81
BslFI GGGAC 1 cut(s) 270
BsmAI GTCTC 2 cut(s) 45, 446
BsmBI CGTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 270
Bso31I GGTCTC 1 cut(s) 446
Bsp1286I GDGCHC 2 cut(s) 114, 239
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 1 cut(s) 144
BspCNI CTCAG 1 cut(s) 139
BspPI GGATC 1 cut(s) 5
BspTI CTTAAG 1 cut(s) 431
BspTNI GGTCTC 1 cut(s) 446
BsrDI GCAATG 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 1 cut(s) 271
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 387
Bst4CI ACNGT 3 cut(s) 55, 127, 340
Bst6I CTCTTC 1 cut(s) 247
BstAFI CTTAAG 1 cut(s) 431
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 2 cut(s) 23, 147
BstF5I GGATG 1 cut(s) 219
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 2 cut(s) 45, 446
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 2 cut(s) 143, 443
BstNSI RCATGY 1 cut(s) 88
BstSFI CTRYAG 1 cut(s) 300
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BtsCI GGATG 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 86
CaiI CAGNNNCTG 1 cut(s) 338
Cfr10I RCCGGY 1 cut(s) 80
CseI GACGC 1 cut(s) 27
Csp6I GTAC 2 cut(s) 188, 274
CviAII CATG 2 cut(s) 85, 107
CviJI RGCY 9 cut(s) 5, 112, 237, 299, 392, 416, 430, 437, 454
CviKI_1 RGCY 9 cut(s) 5, 112, 237, 299, 392, 416, 430, 437, 454
CviQI GTAC 2 cut(s) 188, 274
DdeI CTNAG 2 cut(s) 23, 147
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Eam1104I CTCTTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 247
Ecl136II GAGCTC 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 387
Eco24I GRGCYC 2 cut(s) 114, 239
Eco31I GGTCTC 1 cut(s) 446
Eco53kI GAGCTC 1 cut(s) 237
Eco57I CTGAAG 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 387
EcoT38I GRGCYC 2 cut(s) 114, 239
ErhI CCWWGG 1 cut(s) 387
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 2 cut(s) 88, 110
FaiI YATR 6 cut(s) 76, 86, 108, 181, 183, 457
FaqI GGGAC 1 cut(s) 270
FatI CATG 2 cut(s) 84, 106
FauNDI CATATG 1 cut(s) 181
FokI GGATG 1 cut(s) 206
FriOI GRGCYC 2 cut(s) 114, 239
GsuI CTGGAG 1 cut(s) 27
HapII CCGG 1 cut(s) 81
HgaI GACGC 1 cut(s) 27
Hin1II CATG 2 cut(s) 88, 110
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 1 cut(s) 284
HpaII CCGG 1 cut(s) 81
Hpy166II GTNNAC 2 cut(s) 252, 265
Hpy188I TCNGA 3 cut(s) 132, 171, 231
Hpy188III TCNNGA 2 cut(s) 14, 403
Hpy8I GTNNAC 2 cut(s) 252, 265
Hpy99I CGWCG 1 cut(s) 377
HpyAV CCTTC 3 cut(s) 127, 360, 409
HpyCH4III ACNGT 3 cut(s) 55, 127, 340
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 3 cut(s) 185, 326, 332
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 443
HpyF3I CTNAG 2 cut(s) 23, 147
HpySE526I ACGT 1 cut(s) 372
Hsp92II CATG 2 cut(s) 88, 110
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 2 cut(s) 242, 451
LpnPI CCDG 7 cut(s) 27, 94, 168, 179, 284, 318, 423
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 1 cut(s) 26
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 3 cut(s) 61, 113, 234
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 2 cut(s) 114, 239
MluCI AATT 3 cut(s) 306, 345, 420
MnlI CCTC 4 cut(s) 151, 221, 233, 250
MseI TTAA 2 cut(s) 162, 432
MslI CAYNNNNRTG 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 146
MspCI CTTAAG 1 cut(s) 431
MspI CCGG 1 cut(s) 81
MwoI GCNNNNNNNGC 2 cut(s) 143, 443
NdeI CATATG 1 cut(s) 181
NdeII GATC 1 cut(s) 10
NlaIII CATG 2 cut(s) 88, 110
NmeAIII GCCGAG 1 cut(s) 275
NmuCI GTSAC 1 cut(s) 26
NspI RCATGY 1 cut(s) 88
PaeI GCATGC 1 cut(s) 88
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PfeI GAWTC 1 cut(s) 284
Psp124BI GAGCTC 1 cut(s) 239
PstNI CAGNNNCTG 1 cut(s) 338
PsuI RGATCY 1 cut(s) 10
RsaI GTAC 2 cut(s) 189, 275
RsaNI GTAC 2 cut(s) 188, 274
RseI CAYNNNNRTG 1 cut(s) 83
SacI GAGCTC 1 cut(s) 239
SaqAI TTAA 2 cut(s) 162, 432
Sau3AI GATC 1 cut(s) 10
ScaI AGTACT 1 cut(s) 189
SduI GDGCHC 2 cut(s) 114, 239
SetI ASST 7 cut(s) 143, 213, 239, 375, 418, 432, 456
SfcI CTRYAG 1 cut(s) 300
SmiMI CAYNNNNRTG 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
SphI GCATGC 1 cut(s) 88
Sse9I AATT 3 cut(s) 306, 345, 420
SsiI CCGC 1 cut(s) 144
SstI GAGCTC 1 cut(s) 239
StyI CCWWGG 1 cut(s) 387
TaaI ACNGT 3 cut(s) 55, 127, 340
TaiI ACGT 1 cut(s) 375
TaqI TCGA 1 cut(s) 375
TasI AATT 3 cut(s) 306, 345, 420
TatI WGTACW 2 cut(s) 187, 273
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 2 cut(s) 162, 432
Tru9I TTAA 2 cut(s) 162, 432
TseFI GTSAC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 2 cut(s) 22, 168
Vha464I CTTAAG 1 cut(s) 431
XapI RAATTY 1 cut(s) 306
XceI RCATGY 1 cut(s) 88
ZrmI AGTACT 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.