Rmu_sc0006059.1_g000059

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006059.1
N/A
Physical Location & Seq
Forward (+)
210778 .. 211757
980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006059.1_g000059.1.cds

Sequence Viewer

Length: 726 bp
atggtttgctgcggttacatgtctccggaatatgcaattgatggtgtcttcacagtgaattatgatgtttttagctttggtgttttggtacttgagatactgagtggaaagaagaacagaggatattttcacccagactataagcttaaacttcttggacatagtccagaagaaaggcctagtatgtcaaatgtaattctgatgctaagtattacactgccacccagcctaaagaaccaggctttttcacataaaggcatctgctatctatggctttctcatcaagccagcatgaaagttcctcatccaacacaccagaggctcaatagagttcacttttacttgagacttcgccataacaacttgtgctattatttatcaaacaataagcttcctgcaaaagaacgaggttgtattctgaaaactcagtgctcattccacatgtctgctgatgaacaagaaaaccacaagaattatgaggtttcaagtaaggttttgtggttagacctgagagatatacatcagtttagaccaaagtcaccggaaacgctgcatctgccggcgacccgcgttccggatcgaacgaacccaatcgcggggcgttcgcgatccggatcgctatgtttagcgatttggcgaactcacgcataccagagccaatctctctctgctgatctgaaatttgaatcgcatcctgcggcagagaaggaaggactgctcgcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

241

Amino Acids

27.61

Weight (kDa)

9.21

Isoelectric Point (pI)

56.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 570, 596, 607
AccIII TCCGGA 3 cut(s) 25, 574, 611
AciI CCGC 4 cut(s) 12, 568, 596, 698
AclWI GGATC 3 cut(s) 585, 603, 622
AcsI RAATTY 1 cut(s) 680
AfaI GTAC 1 cut(s) 90
AfiI CCNNNNNNNGG 3 cut(s) 574, 595, 596
AflIII ACRYGT 2 cut(s) 18, 441
AgsI TTSAA 2 cut(s) 486, 686
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 3 cut(s) 75, 145, 391
AluI AGCT 3 cut(s) 75, 145, 391
Alw21I GWGCWC 1 cut(s) 434
Alw26I GTCTC 2 cut(s) 27, 340
AlwI GGATC 3 cut(s) 585, 603, 622
Aor13HI TCCGGA 3 cut(s) 25, 574, 611
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 2 cut(s) 9, 550
ApoI RAATTY 1 cut(s) 680
AsuHPI GGTGA 2 cut(s) 122, 531
BbsI GAAGAC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 434
BbvI GCAGC 1 cut(s) 537
BccI CCATC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 239
BcoDI GTCTC 2 cut(s) 27, 340
BfaI CTAG 2 cut(s) 180, 724
BisI GCNGC 3 cut(s) 10, 551, 699
BlsI GCNGC 3 cut(s) 11, 552, 700
Bme1390I CCNGG 1 cut(s) 239
BmrFI CCNGG 1 cut(s) 239
BmsI GCATC 4 cut(s) 192, 267, 562, 700
BoxI GACNNNNGTC 1 cut(s) 535
BpiI GAAGAC 1 cut(s) 40
BplI GAGNNNNNCTC 2 cut(s) 646, 678
BpuEI CTTGAG 2 cut(s) 113, 364
BsaBI GATNNNNATC 2 cut(s) 519, 613
BsaWI WCCGGW 4 cut(s) 25, 541, 574, 611
Bsc4I CCNNNNNNNGG 3 cut(s) 574, 595, 596
Bse118I RCCGGY 1 cut(s) 559
Bse8I GATNNNNATC 2 cut(s) 519, 613
BseAI TCCGGA 3 cut(s) 25, 574, 611
BseBI CCWGG 1 cut(s) 239
BseGI GGATG 2 cut(s) 304, 691
BseJI GATNNNNATC 2 cut(s) 519, 613
BseLI CCNNNNNNNGG 3 cut(s) 574, 595, 596
BseMII CTCAG 3 cut(s) 92, 440, 500
BseXI GCAGC 1 cut(s) 537
BseYI CCCAGC 1 cut(s) 224
Bsh1236I CGCG 3 cut(s) 570, 596, 607
BshFI GGCC 1 cut(s) 178
BsiHKAI GWGCWC 1 cut(s) 434
BsiSI CCGG 5 cut(s) 26, 542, 560, 575, 612
BslI CCNNNNNNNGG 3 cut(s) 574, 595, 596
BsmAI GTCTC 2 cut(s) 27, 340
BsnI GGCC 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 434
Bsp13I TCCGGA 3 cut(s) 25, 574, 611
Bsp143I GATC 4 cut(s) 577, 608, 614, 673
Bsp68I TCGCGA 1 cut(s) 607
BspACI CCGC 4 cut(s) 12, 568, 596, 698
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 3 cut(s) 93, 439, 501
BspEI TCCGGA 3 cut(s) 25, 574, 611
BspFNI CGCG 3 cut(s) 570, 596, 607
BspPI GGATC 3 cut(s) 585, 603, 622
BsrFI RCCGGY 1 cut(s) 559
BssAI RCCGGY 1 cut(s) 559
BssMI GATC 4 cut(s) 577, 608, 614, 673
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 55
BstC8I GCNNGC 3 cut(s) 289, 561, 720
BstDEI CTNAG 4 cut(s) 101, 206, 426, 509
BstF5I GGATG 2 cut(s) 304, 691
BstFNI CGCG 3 cut(s) 570, 596, 607
BstKTI GATC 4 cut(s) 580, 611, 617, 676
BstMAI GTCTC 2 cut(s) 27, 340
BstMBI GATC 4 cut(s) 577, 608, 614, 673
BstMWI GCNNNNNNNGC 1 cut(s) 556
BstNI CCWGG 1 cut(s) 239
BstNSI RCATGY 2 cut(s) 22, 445
BstPAI GACNNNNGTC 1 cut(s) 535
BstSCI CCNGG 1 cut(s) 237
BstUI CGCG 3 cut(s) 570, 596, 607
BstV1I GCAGC 1 cut(s) 537
BstV2I GAAGAC 1 cut(s) 40
BsuRI GGCC 1 cut(s) 178
BtsCI GGATG 2 cut(s) 304, 691
BtsI GCAGTG 1 cut(s) 215
BtsIMutI CAGTG 3 cut(s) 60, 215, 434
BtuMI TCGCGA 1 cut(s) 607
Cac8I GCNNGC 3 cut(s) 289, 561, 720
Cfr10I RCCGGY 1 cut(s) 559
Csp6I GTAC 1 cut(s) 89
CviAII CATG 3 cut(s) 19, 292, 442
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 4 cut(s) 101, 206, 426, 509
DpnI GATC 4 cut(s) 579, 610, 616, 675
DpnII GATC 4 cut(s) 577, 608, 614, 673
Eco147I AGGCCT 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 237
FaeI CATG 3 cut(s) 22, 295, 445
FatI CATG 3 cut(s) 18, 291, 441
FauI CCCGC 2 cut(s) 575, 589
Fnu4HI GCNGC 3 cut(s) 10, 551, 699
FokI GGATG 2 cut(s) 291, 678
Fsp4HI GCNGC 3 cut(s) 10, 551, 699
FspBI CTAG 2 cut(s) 180, 724
GluI GCNGC 3 cut(s) 10, 551, 699
GsaI CCCAGC 1 cut(s) 228
HaeIII GGCC 1 cut(s) 178
HapII CCGG 5 cut(s) 26, 542, 560, 575, 612
Hin1II CATG 3 cut(s) 22, 295, 445
HindIII AAGCTT 2 cut(s) 143, 389
HinfI GANTC 1 cut(s) 686
HpaII CCGG 5 cut(s) 26, 542, 560, 575, 612
HphI GGTGA 2 cut(s) 122, 531
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 3 cut(s) 201, 420, 678
Hpy188III TCNNGA 5 cut(s) 26, 167, 575, 606, 612
Hpy8I GTNNAC 1 cut(s) 334
HpyAV CCTTC 2 cut(s) 700, 704
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4V TGCA 3 cut(s) 35, 398, 553
HpyF10VI GCNNNNNNNGC 1 cut(s) 556
HpyF3I CTNAG 4 cut(s) 101, 206, 426, 509
Hsp92II CATG 3 cut(s) 22, 295, 445
Kpn2I TCCGGA 3 cut(s) 25, 574, 611
KroI GCCGGC 1 cut(s) 559
KroNI GCCGGC 1 cut(s) 561
Kzo9I GATC 4 cut(s) 577, 608, 614, 673
Lsp1109I GCAGC 1 cut(s) 537
LweI GCATC 4 cut(s) 192, 267, 562, 700
MaeI CTAG 2 cut(s) 180, 724
MaeIII GTNAC 2 cut(s) 14, 537
MalI GATC 4 cut(s) 579, 610, 616, 675
MboI GATC 4 cut(s) 577, 608, 614, 673
MboII GAAGA 3 cut(s) 40, 124, 182
MfeI CAATTG 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 434
MluCI AATT 5 cut(s) 36, 58, 195, 472, 680
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 5 cut(s) 113, 312, 312, 401, 472
MroI TCCGGA 3 cut(s) 25, 574, 611
MroNI GCCGGC 1 cut(s) 559
MseI TTAA 1 cut(s) 147
MspI CCGG 5 cut(s) 26, 542, 560, 575, 612
MspR9I CCNGG 1 cut(s) 239
MunI CAATTG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 239
MvnI CGCG 3 cut(s) 570, 596, 607
MwoI GCNNNNNNNGC 1 cut(s) 556
NaeI GCCGGC 1 cut(s) 561
NdeII GATC 4 cut(s) 577, 608, 614, 673
NgoMIV GCCGGC 1 cut(s) 559
NlaIII CATG 3 cut(s) 22, 295, 445
NmuCI GTSAC 1 cut(s) 537
NruI TCGCGA 1 cut(s) 607
NspI RCATGY 2 cut(s) 22, 445
PceI AGGCCT 1 cut(s) 178
PciI ACATGT 2 cut(s) 18, 441
PdiI GCCGGC 1 cut(s) 561
PfeI GAWTC 1 cut(s) 686
PflFI GACNNNGTC 1 cut(s) 162
PkrI GCNGC 3 cut(s) 11, 552, 700
PscI ACATGT 2 cut(s) 18, 441
PshAI GACNNNNGTC 1 cut(s) 535
Psp6I CCWGG 1 cut(s) 237
PspFI CCCAGC 1 cut(s) 224
PspGI CCWGG 1 cut(s) 237
PsyI GACNNNGTC 1 cut(s) 162
RruI TCGCGA 1 cut(s) 607
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 3 cut(s) 10, 551, 699
Sau3AI GATC 4 cut(s) 577, 608, 614, 673
ScrFI CCNGG 1 cut(s) 239
SduI GDGCHC 1 cut(s) 434
SetI ASST 7 cut(s) 77, 147, 393, 412, 483, 495, 510
SfaNI GCATC 4 cut(s) 192, 267, 562, 700
SmlI CTYRAG 2 cut(s) 92, 343
SmoI CTYRAG 2 cut(s) 92, 343
Sse9I AATT 5 cut(s) 36, 58, 195, 472, 680
SseBI AGGCCT 1 cut(s) 178
SsiI CCGC 4 cut(s) 12, 568, 596, 698
SspMI CTAG 2 cut(s) 180, 724
StuI AGGCCT 1 cut(s) 178
StyD4I CCNGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 55
TaqI TCGA 1 cut(s) 580
TasI AATT 5 cut(s) 36, 58, 195, 472, 680
TauI GCSGC 1 cut(s) 701
TfiI GAWTC 1 cut(s) 686
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 3 cut(s) 60, 222, 434
TseFI GTSAC 1 cut(s) 537
TseI GCWGC 2 cut(s) 9, 550
Tsp45I GTSAC 1 cut(s) 537
TspDTI ATGAA 2 cut(s) 308, 468
TspRI CASTG 3 cut(s) 60, 222, 434
Tth111I GACNNNGTC 1 cut(s) 162
XapI RAATTY 1 cut(s) 680
XceI RCATGY 2 cut(s) 22, 445
XspI CTAG 2 cut(s) 180, 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.