Rmu_sc0006076.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006076.1
N/A
Physical Location & Seq
Forward (+)
1 .. 711
711 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 323 bp
tagagcatgttggtgtcagaaggcctccaagtgatgatgttcaaatccatggcattgcaaatccaaatgcttttaggaaggcagtgctaatgcgcctttcaagcatgacgaatgaggttttctctagacaagtttccacagttgaagatgttccaaatttaaggcttcagatgtccccatcaaaatctctcaggcatgatttattttcatacccaggggagctaacactactgcagaaacttgaggaagttggaagttctgtaaagagggttcaaagtttaattgaggagcaacactctcaaacaccagaacctataggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.9

Weight (kDa)

6.48

Isoelectric Point (pI)

71.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7642 PF24649 1 - 36 9.7e-10 Domain of unknown function (DUF7642)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 156
AcuI CTGAAG 1 cut(s) 151
AgsI TTSAA 4 cut(s) 43, 101, 145, 274
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 1 cut(s) 222
AluI AGCT 1 cut(s) 222
AoxI GGCC 1 cut(s) 22
ApoI RAATTY 1 cut(s) 156
Asp700I GAANNNNTTC 1 cut(s) 149
AspLEI GCGC 1 cut(s) 95
BccI CCATC 1 cut(s) 186
BciT130I CCWGG 1 cut(s) 215
BfaI CTAG 1 cut(s) 125
BfmI CTRYAG 2 cut(s) 232, 314
Bme1390I CCNGG 1 cut(s) 215
BmrFI CCNGG 1 cut(s) 215
BplI GAGNNNNNCTC 4 cut(s) 106, 138, 280, 312
BpuEI CTTGAG 1 cut(s) 262
BsaJI CCNNGG 3 cut(s) 48, 213, 214
Bse3DI GCAATG 1 cut(s) 53
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 3 cut(s) 48, 213, 214
BseMI GCAATG 1 cut(s) 53
BseMII CTCAG 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 301
BshFI GGCC 1 cut(s) 24
BslFI GGGAC 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 159
BsnI GGCC 1 cut(s) 24
Bsp19I CCATGG 1 cut(s) 48
BspANI GGCC 1 cut(s) 24
BspCNI CTCAG 1 cut(s) 203
BspMAI CTGCAG 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 53
BssECI CCNNGG 3 cut(s) 48, 213, 214
BssT1I CCWWGG 1 cut(s) 48
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 190
BstDSI CCRYGG 1 cut(s) 48
BstHHI GCGC 1 cut(s) 95
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNI CCWGG 1 cut(s) 215
BstNSI RCATGY 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 213
BstSFI CTRYAG 2 cut(s) 232, 314
BsuRI GGCC 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 48
BtsI GCAGTG 1 cut(s) 89
BtsIMutI CAGTG 1 cut(s) 89
CfoI GCGC 1 cut(s) 95
CviAII CATG 4 cut(s) 7, 49, 105, 196
CviJI RGCY 3 cut(s) 24, 165, 222
CviKI_1 RGCY 3 cut(s) 24, 165, 222
DdeI CTNAG 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 48
Eco147I AGGCCT 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 4 cut(s) 10, 52, 108, 199
FaiI YATR 6 cut(s) 8, 50, 106, 197, 210, 316
FaqI GGGAC 1 cut(s) 159
FatI CATG 4 cut(s) 6, 48, 104, 195
FspBI CTAG 1 cut(s) 125
GlaI GCGC 1 cut(s) 94
HaeIII GGCC 1 cut(s) 24
HhaI GCGC 1 cut(s) 95
Hin1II CATG 4 cut(s) 10, 52, 108, 199
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
Hpy188I TCNGA 2 cut(s) 19, 170
Hpy188III TCNNGA 1 cut(s) 125
HpyAV CCTTC 2 cut(s) 14, 72
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4V TGCA 2 cut(s) 58, 234
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 190
Hsp92II CATG 4 cut(s) 10, 52, 108, 199
HspAI GCGC 1 cut(s) 93
LmnI GCTCC 2 cut(s) 219, 288
LpnPI CCDG 3 cut(s) 177, 200, 227
MaeI CTAG 1 cut(s) 125
MboII GAAGA 1 cut(s) 157
MluCI AATT 2 cut(s) 156, 281
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 5 cut(s) 35, 108, 237, 260, 279
MroXI GAANNNNTTC 1 cut(s) 149
MseI TTAA 2 cut(s) 160, 280
MslI CAYNNNNRTG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 215
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 101
NcoI CCATGG 1 cut(s) 48
NlaIII CATG 4 cut(s) 10, 52, 108, 199
NspI RCATGY 1 cut(s) 10
PasI CCCWGGG 1 cut(s) 214
PceI AGGCCT 1 cut(s) 24
PdmI GAANNNNTTC 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PsrI GAACNNNNNNTAC 2 cut(s) 254, 286
PstI CTGCAG 1 cut(s) 236
RseI CAYNNNNRTG 1 cut(s) 11
SaqAI TTAA 2 cut(s) 160, 280
ScrFI CCNGG 1 cut(s) 215
SetI ASST 4 cut(s) 119, 224, 315, 321
SfcI CTRYAG 2 cut(s) 232, 314
SmiMI CAYNNNNRTG 1 cut(s) 11
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
Sse9I AATT 2 cut(s) 156, 281
SseBI AGGCCT 1 cut(s) 24
SspMI CTAG 1 cut(s) 125
StuI AGGCCT 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 213
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 141
TasI AATT 2 cut(s) 156, 281
Tru1I TTAA 2 cut(s) 160, 280
Tru9I TTAA 2 cut(s) 160, 280
TscAI CASTG 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 197
TspRI CASTG 1 cut(s) 89
XapI RAATTY 1 cut(s) 156
XbaI TCTAGA 1 cut(s) 124
XceI RCATGY 1 cut(s) 10
XmnI GAANNNNTTC 1 cut(s) 149
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.