Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006076.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

59252 .. 60256

Gene Structure 1005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006076.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atggtcgctgttggctgccgcctccccttcctcttcctcctcctcttcttctttaccttctccccttacctctcgctttccttgtccgaggaggaagccttgcttaagctcaaggcatccttcaccaactctacggccttggccaactgggttcccatcccgggttcctccccatgcaaatgggccggcgtctactgcactaagggcggcatcgtccagggtcttcatctccagaaaatgggcctttctggaacaatcaacatcgaagccttgacccaactcaagggcctccgagcccttagctttgacgacaacaacttcgctggaagtatccccgacttccacacacttggagctctcaagtctctgtcaataaccaacaacaatttctccggcgaaatcccaaaggatttctttgccgaaatgaactcgttaaagaaagtttacctctcgaaaaacaagttctccggcaaaatcccggaatcgctaacgaagttgaaatatctgatggagcttcatctcgagaacaaccaattctccggggccatcccggaatcgctgaccgagttgaaaaatctaacgcagcttcatctcgagaacaaccaaatctccggagccatccctgactttaaagaggaatctctaaaagatctagatttgtctaataacaagctcaagggtgcaatcccggatgacatgtccagatatggtcctaagatatttgccggaaatgaaggactttgtggcggaccactcaagaagccatgtgataatgcacctacaccgtcaccgtcaccgtcaccatcaccaccagaacagccaaaacctcatgcaggaaaaacagaccaatcatcgtccaacacaatcaagatagtggtcggggtgattgttgctggcgtagtggttatgctgctgctggtgataataattagatataagaggcgacggagggaggagaattttagtgttcttggcaaggaaaacatggaggagcatgtacctcaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006935 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009856 GO:0009987 GO:0010183 GO:0010769 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0030054 GO:0030427 GO:0032501 GO:0032502 GO:0035838 GO:0036211 GO:0040008 GO:0040011 GO:0042221 GO:0042330 GO:0042802 GO:0042995 GO:0043170 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044463 GO:0044464 GO:0044706 GO:0045595 GO:0048638 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051128 GO:0051239 GO:0051286 GO:0051510 GO:0051704 GO:0055044 GO:0060284 GO:0065007 GO:0071704 GO:0071944 GO:0080092 GO:0090404 GO:0090406 GO:0120025 GO:0120038 GO:0140096 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

335

Amino Acids

36.71

Weight (kDa)

8.66

Isoelectric Point (pI)

36.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	238
AccI	GTMKAC	1 cut(s)	192
AccIII	TCCGGA	1 cut(s)	611
AciI	CCGC	3 cut(s)	19, 207, 747
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	958
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	1 cut(s)	999
AfiI	CCNNNNNNNGG	4 cut(s)	161, 238, 283, 833
AflII	CTTAAG	1 cut(s)	104
AflIII	ACRYGT	1 cut(s)	696
AgsI	TTSAA	2 cut(s)	499, 571
AjnI	CCWGG	1 cut(s)	216
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
AluBI	AGCT	6 cut(s)	109, 303, 356, 514, 586, 673
AluI	AGCT	6 cut(s)	109, 303, 356, 514, 586, 673
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	369
Ama87I	CYCGRG	3 cut(s)	160, 521, 593
Aor13HI	TCCGGA	1 cut(s)	611
AoxI	GGCC	6 cut(s)	135, 141, 183, 241, 286, 543
ApeKI	GCWGC	4 cut(s)	15, 583, 910, 913
ApoI	RAATTY	1 cut(s)	958
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AspS9I	GGNCC	6 cut(s)	183, 241, 286, 543, 710, 749
AsuC2I	CCSGG	6 cut(s)	161, 162, 479, 541, 551, 689
AsuHPI	GGTGA	7 cut(s)	115, 780, 786, 792, 798, 895, 931
AvaI	CYCGRG	3 cut(s)	160, 521, 593
AvaII	GGWCC	2 cut(s)	710, 749
BalI	TGGCCA	1 cut(s)	143
BanII	GRGCYC	2 cut(s)	298, 358
BbsI	GAAGAC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	4 cut(s)	2, 595, 897, 900
BccI	CCATC	5 cut(s)	164, 502, 554, 626, 811
BceAI	ACGGC	1 cut(s)	150
BciT130I	CCWGG	1 cut(s)	218
BciVI	GTATCC	1 cut(s)	341
BcnI	CCSGG	6 cut(s)	161, 162, 479, 541, 551, 689
BcoDI	GTCTC	1 cut(s)	369
BfaI	CTAG	1 cut(s)	653
BfrI	CTTAAG	1 cut(s)	104
BfuI	GTATCC	1 cut(s)	341
BglII	AGATCT	1 cut(s)	649
BisI	GCNGC	6 cut(s)	16, 19, 208, 584, 911, 914
BlsI	GCNGC	6 cut(s)	17, 20, 209, 585, 912, 915
Bme1390I	CCNGG	7 cut(s)	161, 162, 218, 479, 541, 551, 689
Bme18I	GGWCC	2 cut(s)	710, 749
BmeT110I	CYCGRG	3 cut(s)	160, 521, 593
BmgT120I	GGNCC	6 cut(s)	183, 241, 286, 543, 710, 749
BmiI	GGNNCC	4 cut(s)	153, 166, 544, 616
BmrFI	CCNGG	7 cut(s)	161, 162, 218, 479, 541, 551, 689
BmrI	ACTGGG	1 cut(s)	157
BmsI	GCATC	2 cut(s)	125, 219
BmuI	ACTGGG	1 cut(s)	157
BpiI	GAAGAC	1 cut(s)	215
BpmI	CTGGAG	1 cut(s)	215
Bpu10I	CCTNAGC	1 cut(s)	299
BpuEI	CTTGAG	5 cut(s)	95, 266, 344, 659, 740
BpuMI	CCSGG	6 cut(s)	161, 162, 479, 541, 551, 689
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	5 cut(s)	87, 138, 160, 217, 540
BsaWI	WCCGGW	1 cut(s)	611
BsaXI	ACNNNNNCTCC	8 cut(s)	374, 404, 449, 479, 521, 551, 593, 623
Bsc4I	CCNNNNNNNGG	4 cut(s)	161, 238, 283, 833
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	152
BseAI	TCCGGA	1 cut(s)	611
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	5 cut(s)	87, 138, 160, 217, 540
BseGI	GGATG	5 cut(s)	116, 156, 546, 618, 697
BseLI	CCNNNNNNNGG	4 cut(s)	161, 238, 283, 833
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	5 cut(s)	29, 32, 104, 968, 1004
BseXI	GCAGC	4 cut(s)	2, 595, 897, 900
BsgI	GTGCAG	1 cut(s)	181
BshFI	GGCC	6 cut(s)	137, 143, 185, 243, 288, 545
BsiHKAI	GWGCWC	1 cut(s)	358
BsiHKCI	CYCGRG	3 cut(s)	160, 521, 593
BslI	CCNNNNNNNGG	4 cut(s)	161, 238, 283, 833
BsmAI	GTCTC	1 cut(s)	369
BsnI	GGCC	6 cut(s)	137, 143, 185, 243, 288, 545
BsoBI	CYCGRG	3 cut(s)	160, 521, 593
Bsp1286I	GDGCHC	2 cut(s)	298, 358
Bsp13I	TCCGGA	1 cut(s)	611
Bsp143I	GATC	1 cut(s)	649
BspACI	CCGC	3 cut(s)	19, 207, 747
BspANI	GGCC	6 cut(s)	137, 143, 185, 243, 288, 545
BspEI	TCCGGA	1 cut(s)	611
BspLI	GGNNCC	4 cut(s)	153, 166, 544, 616
BspTI	CTTAAG	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	5 cut(s)	87, 138, 160, 217, 540
BssMI	GATC	1 cut(s)	649
BssNI	GRCGYC	1 cut(s)	189
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	3 cut(s)	786, 792, 798
Bst6I	CTCTTC	2 cut(s)	38, 50
BstACI	GRCGYC	1 cut(s)	189
BstAFI	CTTAAG	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	187, 895
BstDEI	CTNAG	3 cut(s)	201, 299, 714
BstENI	CCTNNNNNAGG	1 cut(s)	831
BstF5I	GGATG	5 cut(s)	116, 156, 546, 618, 697
BstKTI	GATC	1 cut(s)	652
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	1 cut(s)	649
BstMWI	GCNNNNNNNGC	2 cut(s)	195, 204
BstNI	CCWGG	1 cut(s)	218
BstNSI	RCATGY	2 cut(s)	700, 998
BstSCI	CCNGG	7 cut(s)	159, 160, 216, 477, 539, 549, 687
BstV1I	GCAGC	4 cut(s)	2, 595, 897, 900
BstV2I	GAAGAC	1 cut(s)	215
BstX2I	RGATCY	1 cut(s)	649
BstXI	CCANNNNNNTGG	2 cut(s)	180, 350
BstYI	RGATCY	1 cut(s)	649
BsuI	GTATCC	1 cut(s)	341
BsuRI	GGCC	6 cut(s)	137, 143, 185, 243, 288, 545
BtsCI	GGATG	5 cut(s)	116, 156, 546, 618, 697
Cac8I	GCNNGC	2 cut(s)	187, 895
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	6 cut(s)	183, 241, 286, 543, 710, 749
Cfr9I	CCCGGG	1 cut(s)	160
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	998
CviAII	CATG	6 cut(s)	174, 697, 765, 830, 985, 995
CviQI	GTAC	1 cut(s)	998
DdeI	CTNAG	3 cut(s)	201, 299, 714
DpnI	GATC	1 cut(s)	651
DpnII	GATC	1 cut(s)	649
DraI	TTTAAA	1 cut(s)	631
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	2 cut(s)	38, 50
EarI	CTCTTC	2 cut(s)	38, 50
EciI	GGCGGA	1 cut(s)	762
Ecl136II	GAGCTC	1 cut(s)	356
Eco130I	CCWWGG	1 cut(s)	138
Eco24I	GRGCYC	2 cut(s)	298, 358
Eco47I	GGWCC	2 cut(s)	710, 749
Eco53kI	GAGCTC	1 cut(s)	356
Eco88I	CYCGRG	3 cut(s)	160, 521, 593
EcoICRI	GAGCTC	1 cut(s)	356
EcoNI	CCTNNNNNAGG	1 cut(s)	831
EcoO109I	RGGNCCY	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	138
EcoT38I	GRGCYC	2 cut(s)	298, 358
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	6 cut(s)	177, 700, 768, 833, 988, 998
FaiI	YATR	9 cut(s)	175, 698, 708, 766, 831, 908, 936, 986, 996
FalI	AAGNNNNNCTT	6 cut(s)	87, 119, 104, 136, 398, 430
FatI	CATG	6 cut(s)	173, 696, 764, 829, 984, 994
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	6 cut(s)	16, 19, 208, 584, 911, 914
FokI	GGATG	5 cut(s)	103, 143, 533, 605, 704
FriOI	GRGCYC	2 cut(s)	298, 358
Fsp4HI	GCNGC	6 cut(s)	16, 19, 208, 584, 911, 914
FspBI	CTAG	1 cut(s)	653
GluI	GCNGC	6 cut(s)	16, 19, 208, 584, 911, 914
GsuI	CTGGAG	1 cut(s)	215
HaeIII	GGCC	6 cut(s)	137, 143, 185, 243, 288, 545
HgaI	GACGC	1 cut(s)	178
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	6 cut(s)	177, 700, 768, 833, 988, 998
HinfI	GANTC	3 cut(s)	482, 554, 638
HphI	GGTGA	7 cut(s)	115, 780, 786, 792, 798, 895, 931
Hpy166II	GTNNAC	2 cut(s)	193, 445
Hpy188I	TCNGA	3 cut(s)	88, 293, 507
Hpy8I	GTNNAC	2 cut(s)	193, 445
Hpy99I	CGWCG	1 cut(s)	948
HpyAV	CCTTC	4 cut(s)	37, 67, 130, 728
HpyCH4III	ACNGT	3 cut(s)	786, 792, 798
HpyCH4V	TGCA	5 cut(s)	177, 198, 683, 776, 833
HpyF10VI	GCNNNNNNNGC	2 cut(s)	195, 204
HpyF3I	CTNAG	3 cut(s)	201, 299, 714
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	6 cut(s)	177, 700, 768, 833, 988, 998
Kpn2I	TCCGGA	1 cut(s)	611
KroI	GCCGGC	1 cut(s)	185
KroNI	GCCGGC	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	649
LmnI	GCTCC	4 cut(s)	353, 511, 614, 991
Lsp1109I	GCAGC	4 cut(s)	2, 595, 897, 900
LweI	GCATC	2 cut(s)	125, 219
MaeI	CTAG	1 cut(s)	653
MaeIII	GTNAC	3 cut(s)	786, 792, 798
MalI	GATC	1 cut(s)	651
MboI	GATC	1 cut(s)	649
MboII	GAAGA	4 cut(s)	25, 37, 40, 215
MflI	RGATCY	1 cut(s)	649
MhlI	GDGCHC	2 cut(s)	298, 358
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	4 cut(s)	385, 533, 927, 958
MluNI	TGGCCA	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	882
Mox20I	TGGCCA	1 cut(s)	143
MroI	TCCGGA	1 cut(s)	611
MroNI	GCCGGC	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	3 cut(s)	105, 434, 630
MslI	CAYNNNNRTG	1 cut(s)	178
Msp20I	TGGCCA	1 cut(s)	143
MspCI	CTTAAG	1 cut(s)	104
MspR9I	CCNGG	7 cut(s)	161, 162, 218, 479, 541, 551, 689
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	2 cut(s)	195, 204
NaeI	GCCGGC	1 cut(s)	187
NciI	CCSGG	6 cut(s)	161, 162, 479, 541, 551, 689
NdeII	GATC	1 cut(s)	649
NgoMIV	GCCGGC	1 cut(s)	185
NlaIII	CATG	6 cut(s)	177, 700, 768, 833, 988, 998
NlaIV	GGNNCC	4 cut(s)	153, 166, 544, 616
NmuCI	GTSAC	3 cut(s)	786, 792, 798
NspI	RCATGY	2 cut(s)	700, 998
PaeR7I	CTCGAG	2 cut(s)	521, 593
PciI	ACATGT	1 cut(s)	696
PdiI	GCCGGC	1 cut(s)	187
PfeI	GAWTC	3 cut(s)	482, 554, 638
PflMI	CCANNNNNTGG	1 cut(s)	238
PfoI	TCCNGGA	3 cut(s)	477, 549, 687
PkrI	GCNGC	6 cut(s)	17, 20, 209, 585, 912, 915
PscI	ACATGT	1 cut(s)	696
Psp124BI	GAGCTC	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	4 cut(s)	153, 166, 544, 616
PspPI	GGNCC	6 cut(s)	183, 241, 286, 543, 710, 749
PsuI	RGATCY	1 cut(s)	649
RsaI	GTAC	1 cut(s)	999
RsaNI	GTAC	1 cut(s)	998
RseI	CAYNNNNRTG	1 cut(s)	178
SacI	GAGCTC	1 cut(s)	358
SaqAI	TTAA	3 cut(s)	105, 434, 630
SatI	GCNGC	6 cut(s)	16, 19, 208, 584, 911, 914
Sau3AI	GATC	1 cut(s)	649
Sau96I	GGNCC	6 cut(s)	183, 241, 286, 543, 710, 749
ScrFI	CCNGG	7 cut(s)	161, 162, 218, 479, 541, 551, 689
SduI	GDGCHC	2 cut(s)	298, 358
SfaNI	GCATC	2 cut(s)	125, 219
Sfr274I	CTCGAG	2 cut(s)	521, 593
SinI	GGWCC	2 cut(s)	710, 749
SlaI	CTCGAG	2 cut(s)	521, 593
SmaI	CCCGGG	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	178
SmlI	CTYRAG	8 cut(s)	104, 110, 281, 359, 521, 593, 674, 755
SmoI	CTYRAG	8 cut(s)	104, 110, 281, 359, 521, 593, 674, 755
Sse9I	AATT	4 cut(s)	385, 533, 927, 958
SsiI	CCGC	3 cut(s)	19, 207, 747
SspMI	CTAG	1 cut(s)	653
SstI	GAGCTC	1 cut(s)	358
StyD4I	CCNGG	7 cut(s)	159, 160, 216, 477, 539, 549, 687
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	3 cut(s)	786, 792, 798
TaqI	TCGA	4 cut(s)	264, 452, 522, 594
TaqII	GACCGA	1 cut(s)	578
TasI	AATT	4 cut(s)	385, 533, 927, 958
TauI	GCSGC	2 cut(s)	21, 210
TfiI	GAWTC	3 cut(s)	482, 554, 638
Tru1I	TTAA	3 cut(s)	105, 434, 630
Tru9I	TTAA	3 cut(s)	105, 434, 630
TseFI	GTSAC	3 cut(s)	786, 792, 798
TseI	GCWGC	4 cut(s)	15, 583, 910, 913
Tsp45I	GTSAC	3 cut(s)	786, 792, 798
TspDTI	ATGAA	5 cut(s)	215, 440, 506, 578, 747
TspGWI	ACGGA	1 cut(s)	961
TspMI	CCCGGG	1 cut(s)	160
Van91I	CCANNNNNTGG	1 cut(s)	238
Vha464I	CTTAAG	1 cut(s)	104
VpaK11BI	GGWCC	2 cut(s)	710, 749
XagI	CCTNNNNNAGG	1 cut(s)	831
XapI	RAATTY	1 cut(s)	958
XbaI	TCTAGA	1 cut(s)	652
XceI	RCATGY	2 cut(s)	700, 998
XhoI	CTCGAG	2 cut(s)	521, 593
XmaI	CCCGGG	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.