Rmu_sc0006100.1_g000002

Wound induced protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006100.1
N/A
Physical Location & Seq
Reverse (-)
2173 .. 6336
4164 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1290 bp
atgagttcttcatcatcagtagcaatttgctactactctactatcaaacagggcttggatagcggcagccagtgtgggagttgtggaggccttgaaagaccaagtacgcatatgcaggtggaatcacacaatgagactggtgcagcaacgcccgccaagaacaacctcgggtcttattctcaggcgcatcacaaactctcttcctcatactctgctttgttatcaaggaaactcagagatgacaagccaaagcaatctaaggagtctatatatgaggaatgtcatgacgaccttttttctttggagctgtccctagggaaaccggaacctccaccaattcaccaaggtgaaattccggtgccacttccgccaccccagaaacctccggctcatccagtcccaccttcgctggcatctctgacccaacaaccacctgggtttgcttccactgccaacccacctgggtttgcttccactgccaacccacctgggtttgcttccactgccaacccacctgggtttgcttccactgccaacccacctgggtttgcttccactgccaacccacctgggtttgcttccactgccaacccacctgggtttgcttccactgccaacccacctgggtttgcttccactgccaacccacctgggtttgcttccactgccaacccacctgggtttgcttccactgccaacccacctgggtttgcttccactgccaacccacctgggtttgcttccactgccaacccacctgggtttgcttccactgccaacccacctgggtttgcttccactgccaacccacctgggtttgcttccactgccaacccacctgggtttgcttccactgccaacccacctgggtttgcttccactgccaacccacctgggtttgcttccactgccaacccacctggaatggcctcctcagaaagtgcagaaggagccaccgtgttctcctccatcatcgcgtcgcaaactcgatcaatgaagagaaaagaaatcatcatcatgagtactacttcgagaacaagcaaggctattgtcgcagcaagtgttggagttgtggaggcactgaaggatcaaggcatttgcaggtggaattctgctataagatctattcaccaacaagccaagactcagttcaggtccttttctcaggccaacaccaagttatcttcttcttcaacctctgctttgagcagagttagagatgagaagctgaagaagtcggaggagtctttgaggacagtcatgtacctaagctgctggggtcccaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

429

Amino Acids

43.99

Weight (kDa)

9.1

Isoelectric Point (pI)

52.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 351 - 428 3.7e-33 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 106, 1092
Acc36I ACCTGC 2 cut(s) 106, 1092
AccB1I GGYRCC 1 cut(s) 358
AccII CGCG 1 cut(s) 977
AciI CCGC 3 cut(s) 63, 153, 368
AclWI GGATC 1 cut(s) 1095
AcsI RAATTY 2 cut(s) 351, 1108
AcuI CTGAAG 2 cut(s) 1103, 1250
AfaI GTAC 3 cut(s) 106, 1024, 1265
AgsI TTSAA 2 cut(s) 95, 1194
AjuI GAANNNNNNNTTGG 4 cut(s) 336, 368, 1133, 1165
AleI CACNNNNGTG 1 cut(s) 345
AluBI AGCT 3 cut(s) 307, 1228, 1272
AluI AGCT 3 cut(s) 307, 1228, 1272
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 1 cut(s) 1095
Ama87I CYCGRG 1 cut(s) 167
AoxI GGCC 3 cut(s) 88, 927, 1167
ApeKI GCWGC 4 cut(s) 66, 143, 1055, 1272
ApoI RAATTY 2 cut(s) 351, 1108
AspA2I CCTAGG 1 cut(s) 313
AspLEI GCGC 1 cut(s) 187
AspS9I GGNCC 2 cut(s) 1155, 1280
AsuHPI GGTGA 3 cut(s) 332, 359, 1121
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 2 cut(s) 1155, 1280
AvrII CCTAGG 1 cut(s) 313
BanI GGYRCC 1 cut(s) 358
BbvI GCAGC 4 cut(s) 78, 155, 1067, 1259
BccI CCATC 1 cut(s) 977
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 1 cut(s) 314
BfuAI ACCTGC 2 cut(s) 106, 1092
BglII AGATCT 1 cut(s) 1121
BisI GCNGC 5 cut(s) 64, 67, 144, 1056, 1273
BlnI CCTAGG 1 cut(s) 313
BlsI GCNGC 5 cut(s) 65, 68, 145, 1057, 1274
BmcAI AGTACT 1 cut(s) 1024
Bme18I GGWCC 2 cut(s) 1155, 1280
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 2 cut(s) 1155, 1280
BmiI GGNNCC 5 cut(s) 327, 360, 952, 1281, 1282
BmsI GCATC 2 cut(s) 196, 422
Bpu10I CCTNAGC 1 cut(s) 1268
BsaWI WCCGGW 2 cut(s) 322, 355
BsaXI ACNNNNNCTCC 2 cut(s) 942, 972
Bse1I ACTGG 3 cut(s) 70, 142, 395
BseGI GGATG 1 cut(s) 391
BseMII CTCAG 5 cut(s) 194, 247, 948, 1160, 1178
BseNI ACTGG 3 cut(s) 70, 142, 395
BseRI GAGGAG 3 cut(s) 922, 955, 1256
BseXI GCAGC 4 cut(s) 78, 155, 1067, 1259
BseYI CCCAGC 1 cut(s) 1275
BsgI GTGCAG 2 cut(s) 162, 963
Bsh1236I CGCG 1 cut(s) 977
BshFI GGCC 3 cut(s) 90, 929, 1169
BshNI GGYRCC 1 cut(s) 358
BsiHKCI CYCGRG 1 cut(s) 167
BsiSI CCGG 3 cut(s) 323, 356, 386
BslFI GGGAC 3 cut(s) 295, 383, 1266
BsmAI GTCTC 1 cut(s) 128
BsmFI GGGAC 3 cut(s) 295, 383, 1266
BsnI GGCC 3 cut(s) 90, 929, 1169
BsoBI CYCGRG 1 cut(s) 167
Bsp143I GATC 3 cut(s) 989, 1087, 1121
BspACI CCGC 3 cut(s) 63, 153, 368
BspANI GGCC 3 cut(s) 90, 929, 1169
BspCNI CTCAG 5 cut(s) 193, 246, 947, 1159, 1177
BspFNI CGCG 1 cut(s) 977
BspHI TCATGA 2 cut(s) 283, 1017
BspLI GGNNCC 5 cut(s) 327, 360, 952, 1281, 1282
BspMI ACCTGC 2 cut(s) 106, 1092
BspPI GGATC 1 cut(s) 1095
BspT107I GGYRCC 1 cut(s) 358
BsrI ACTGG 3 cut(s) 70, 142, 395
BssMI GATC 3 cut(s) 989, 1087, 1121
BssT1I CCWWGG 2 cut(s) 313, 343
Bst4CI ACNGT 2 cut(s) 958, 1258
Bst6I CTCTTC 2 cut(s) 205, 992
BstC8I GCNNGC 2 cut(s) 153, 411
BstDEI CTNAG 7 cut(s) 180, 233, 258, 934, 1146, 1164, 1268
BstF5I GGATG 1 cut(s) 391
BstFNI CGCG 1 cut(s) 977
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 3 cut(s) 992, 1090, 1124
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 3 cut(s) 989, 1087, 1121
BstUI CGCG 1 cut(s) 977
BstV1I GCAGC 4 cut(s) 78, 155, 1067, 1259
BstX2I RGATCY 1 cut(s) 1121
BstYI RGATCY 1 cut(s) 1121
BsuRI GGCC 3 cut(s) 90, 929, 1169
BtgZI GCGATG 1 cut(s) 958
BtsCI GGATG 1 cut(s) 391
BveI ACCTGC 2 cut(s) 106, 1092
Cac8I GCNNGC 2 cut(s) 153, 411
CciI TCATGA 2 cut(s) 283, 1017
CfoI GCGC 1 cut(s) 187
Cfr13I GGNCC 2 cut(s) 1155, 1280
CseI GACGC 1 cut(s) 966
Csp6I GTAC 3 cut(s) 105, 1023, 1264
CviAII CATG 3 cut(s) 284, 1018, 1261
CviQI GTAC 3 cut(s) 105, 1023, 1264
DdeI CTNAG 7 cut(s) 180, 233, 258, 934, 1146, 1164, 1268
DpnI GATC 3 cut(s) 991, 1089, 1123
DpnII GATC 3 cut(s) 989, 1087, 1121
Eam1104I CTCTTC 2 cut(s) 205, 992
EarI CTCTTC 2 cut(s) 205, 992
EciI GGCGGA 1 cut(s) 357
Eco130I CCWWGG 2 cut(s) 313, 343
Eco147I AGGCCT 1 cut(s) 90
Eco47I GGWCC 2 cut(s) 1155, 1280
Eco57I CTGAAG 2 cut(s) 1103, 1250
Eco88I CYCGRG 1 cut(s) 167
EcoO109I RGGNCCY 2 cut(s) 1155, 1280
EcoRI GAATTC 1 cut(s) 1108
EcoT14I CCWWGG 2 cut(s) 313, 343
ErhI CCWWGG 2 cut(s) 313, 343
FaeI CATG 3 cut(s) 287, 1021, 1264
FaqI GGGAC 3 cut(s) 295, 383, 1266
FatI CATG 3 cut(s) 283, 1017, 1260
FauI CCCGC 1 cut(s) 160
FauNDI CATATG 1 cut(s) 111
Fnu4HI GCNGC 5 cut(s) 64, 67, 144, 1056, 1273
FokI GGATG 1 cut(s) 378
Fsp4HI GCNGC 5 cut(s) 64, 67, 144, 1056, 1273
FspBI CTAG 1 cut(s) 314
GlaI GCGC 1 cut(s) 186
GluI GCNGC 5 cut(s) 64, 67, 144, 1056, 1273
GsaI CCCAGC 1 cut(s) 1279
HaeIII GGCC 3 cut(s) 90, 929, 1169
HapII CCGG 3 cut(s) 323, 356, 386
HgaI GACGC 1 cut(s) 966
HhaI GCGC 1 cut(s) 187
Hin1II CATG 3 cut(s) 287, 1021, 1264
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HinfI GANTC 4 cut(s) 122, 263, 1144, 1244
HpaII CCGG 3 cut(s) 323, 356, 386
HphI GGTGA 3 cut(s) 332, 359, 1121
Hpy188I TCNGA 4 cut(s) 236, 420, 937, 1240
Hpy188III TCNNGA 3 cut(s) 284, 1018, 1032
Hpy99I CGWCG 1 cut(s) 982
HpyAV CCTTC 3 cut(s) 414, 941, 1078
HpyCH4III ACNGT 2 cut(s) 958, 1258
HpyCH4V TGCA 4 cut(s) 115, 143, 944, 1101
HpyF3I CTNAG 7 cut(s) 180, 233, 258, 934, 1146, 1164, 1268
Hsp92II CATG 3 cut(s) 287, 1021, 1264
HspAI GCGC 1 cut(s) 185
KflI GGGWCCC 1 cut(s) 1280
Kzo9I GATC 3 cut(s) 989, 1087, 1121
LmnI GCTCC 2 cut(s) 304, 950
Lsp1109I GCAGC 4 cut(s) 78, 155, 1067, 1259
LweI GCATC 2 cut(s) 196, 422
MaeI CTAG 1 cut(s) 314
MalI GATC 3 cut(s) 991, 1089, 1123
MboI GATC 3 cut(s) 989, 1087, 1121
MboII GAAGA 6 cut(s) 192, 1009, 1176, 1179, 1182, 1243
MflI RGATCY 1 cut(s) 1121
MluCI AATT 4 cut(s) 24, 336, 351, 1108
MlyI GAGTC 3 cut(s) 272, 1138, 1253
MmeI TCCRAC 2 cut(s) 1045, 1218
MslI CAYNNNNRTG 2 cut(s) 345, 1016
MspI CCGG 3 cut(s) 323, 356, 386
MvnI CGCG 1 cut(s) 977
NdeI CATATG 1 cut(s) 111
NdeII GATC 3 cut(s) 989, 1087, 1121
NlaIII CATG 3 cut(s) 287, 1021, 1264
NlaIV GGNNCC 5 cut(s) 327, 360, 952, 1281, 1282
OliI CACNNNNGTG 1 cut(s) 345
PagI TCATGA 2 cut(s) 283, 1017
PaqCI CACCTGC 2 cut(s) 106, 1092
PceI AGGCCT 1 cut(s) 90
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 5 cut(s) 65, 68, 145, 1057, 1274
PleI GAGTC 3 cut(s) 271, 1138, 1252
PpsI GAGTC 3 cut(s) 271, 1138, 1252
PpuMI RGGWCCY 2 cut(s) 1155, 1280
Psp5II RGGWCCY 2 cut(s) 1155, 1280
PspFI CCCAGC 1 cut(s) 1275
PspN4I GGNNCC 5 cut(s) 327, 360, 952, 1281, 1282
PspPI GGNCC 2 cut(s) 1155, 1280
PspPPI RGGWCCY 2 cut(s) 1155, 1280
PsuI RGATCY 1 cut(s) 1121
RsaI GTAC 3 cut(s) 106, 1024, 1265
RsaNI GTAC 3 cut(s) 105, 1023, 1264
RseI CAYNNNNRTG 2 cut(s) 345, 1016
SatI GCNGC 5 cut(s) 64, 67, 144, 1056, 1273
Sau3AI GATC 3 cut(s) 989, 1087, 1121
Sau96I GGNCC 2 cut(s) 1155, 1280
ScaI AGTACT 1 cut(s) 1024
SchI GAGTC 3 cut(s) 272, 1138, 1253
SfaNI GCATC 2 cut(s) 196, 422
SinI GGWCC 2 cut(s) 1155, 1280
SmiMI CAYNNNNRTG 2 cut(s) 345, 1016
Sse9I AATT 4 cut(s) 24, 336, 351, 1108
SseBI AGGCCT 1 cut(s) 90
SsiI CCGC 3 cut(s) 63, 153, 368
SspMI CTAG 1 cut(s) 314
StuI AGGCCT 1 cut(s) 90
StyI CCWWGG 2 cut(s) 313, 343
TaaI ACNGT 2 cut(s) 958, 1258
TaqI TCGA 2 cut(s) 988, 1031
TasI AATT 4 cut(s) 24, 336, 351, 1108
TatI WGTACW 1 cut(s) 1022
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 1 cut(s) 122
TseI GCWGC 4 cut(s) 66, 143, 1055, 1272
TspDTI ATGAA 1 cut(s) 1010
VpaK11BI GGWCC 2 cut(s) 1155, 1280
XapI RAATTY 2 cut(s) 351, 1108
XcmI CCANNNNNNNNNTGG 1 cut(s) 431
XmaJI CCTAGG 1 cut(s) 313
XspI CTAG 1 cut(s) 314
ZrmI AGTACT 1 cut(s) 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.