Rmu_sc0006129.1_g000001

HEAT repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006129.1
N/A
Physical Location & Seq
Forward (+)
1 .. 669
669 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 669 bp
gcagaccatcaagaggctggcgaagctgaggtgatatctgattccctggatgatctgagatcctcacagggtaatatactacgtgacaatgtcaagacagaaaaacccgatgattcccaaactaatagtggttttatcgaggcattggatgatcaaaaggagagagacgataaattgttatccggaccagaagagggaatgggagcagagttgaaccaagttactgaacacagaccatctgaacttcatcctattgaagatgctgaaggattggtcggaaagaattcagcacaccttgagcagggaaaggagaacactgataatagaccagtgcaatcatcatcagatcctgtaaagcttgatgaggaagtaaagggaggagggtcgaaccaagtgacagaacagataccatctgaacttcatcctgtcgaagatgctcaaggatcggttgcagtgaattcagcgcaccatgagcagggaaaggagatccctgataatagaccagtgcaatcatcatcagaccctgtaaagcttgacaagcaagtaaaggataaaagagaagataaagaagagtcggcagttgaagattctcggccccaacaacacgaacagagcgccaaagttcaagcattagttaaaagcaatgatgatgctgagaaatctgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

24.26

Weight (kDa)

4.51

Isoelectric Point (pI)

57.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 182
AclWI GGATC 4 cut(s) 54, 341, 451, 481
AcsI RAATTY 2 cut(s) 283, 457
AcuI CTGAAG 1 cut(s) 285
AfiI CCNNNNNNNGG 4 cut(s) 13, 194, 301, 475
AgsI TTSAA 4 cut(s) 214, 257, 584, 626
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 3 cut(s) 26, 358, 532
AluI AGCT 3 cut(s) 26, 358, 532
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 4 cut(s) 54, 341, 451, 481
AlwNI CAGNNNCTG 2 cut(s) 350, 524
Aor13HI TCCGGA 1 cut(s) 182
AoxI GGCC 1 cut(s) 593
ApoI RAATTY 2 cut(s) 283, 457
Asp700I GAANNNNTTC 1 cut(s) 283
AspLEI GCGC 2 cut(s) 466, 617
AspS9I GGNCC 2 cut(s) 185, 594
AsuHPI GGTGA 1 cut(s) 43
AvaII GGWCC 1 cut(s) 185
BbvCI CCTCAGC 1 cut(s) 27
BccI CCATC 3 cut(s) 15, 244, 418
BciT130I CCWGG 1 cut(s) 47
BclI TGATCA 1 cut(s) 151
BcoDI GTCTC 1 cut(s) 159
BfoI RGCGCY 1 cut(s) 618
Bme1390I CCNGG 1 cut(s) 47
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 2 cut(s) 185, 594
BmiI GGNNCC 1 cut(s) 596
BmrFI CCNGG 1 cut(s) 47
BmsI GCATC 3 cut(s) 250, 424, 640
Bpu10I CCTNAGC 1 cut(s) 27
BpuEI CTTGAG 2 cut(s) 317, 423
BsaAI YACGTR 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 45
BsaWI WCCGGW 1 cut(s) 182
Bsc4I CCNNNNNNNGG 4 cut(s) 13, 194, 301, 475
Bse1I ACTGG 2 cut(s) 329, 503
Bse3DI GCAATG 1 cut(s) 649
BseAI TCCGGA 1 cut(s) 182
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 4 cut(s) 55, 154, 247, 421
BseLI CCNNNNNNNGG 4 cut(s) 13, 194, 301, 475
BseMI GCAATG 1 cut(s) 649
BseMII CTCAG 3 cut(s) 18, 47, 645
BseNI ACTGG 2 cut(s) 329, 503
BseRI GAGGAG 1 cut(s) 393
BshFI GGCC 1 cut(s) 595
BsiSI CCGG 1 cut(s) 183
BslI CCNNNNNNNGG 4 cut(s) 13, 194, 301, 475
BsmAI GTCTC 1 cut(s) 159
BsmBI CGTCTC 1 cut(s) 159
BsnI GGCC 1 cut(s) 595
Bsp13I TCCGGA 1 cut(s) 182
Bsp143I GATC 6 cut(s) 52, 59, 151, 346, 443, 486
BspANI GGCC 1 cut(s) 595
BspCNI CTCAG 3 cut(s) 19, 48, 646
BspEI TCCGGA 1 cut(s) 182
BspLI GGNNCC 1 cut(s) 596
BspPI GGATC 4 cut(s) 54, 341, 451, 481
BsrDI GCAATG 1 cut(s) 649
BsrI ACTGG 2 cut(s) 329, 503
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 6 cut(s) 52, 59, 151, 346, 443, 486
Bst2UI CCWGG 1 cut(s) 47
Bst6I CTCTTC 2 cut(s) 186, 564
BstBAI YACGTR 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 3 cut(s) 27, 56, 654
BstENI CCTNNNNNAGG 1 cut(s) 299
BstF5I GGATG 4 cut(s) 55, 154, 247, 421
BstH2I RGCGCY 1 cut(s) 618
BstHHI GCGC 2 cut(s) 466, 617
BstKTI GATC 6 cut(s) 55, 62, 154, 349, 446, 489
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 6 cut(s) 52, 59, 151, 346, 443, 486
BstMWI GCNNNNNNNGC 3 cut(s) 23, 472, 538
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 45
BstX2I RGATCY 3 cut(s) 59, 346, 486
BstYI RGATCY 3 cut(s) 59, 346, 486
BsuRI GGCC 1 cut(s) 595
BtsCI GGATG 4 cut(s) 55, 154, 247, 421
BtsI GCAGTG 1 cut(s) 459
BtsIMutI CAGTG 4 cut(s) 315, 336, 459, 510
Cac8I GCNNGC 1 cut(s) 19
CaiI CAGNNNCTG 2 cut(s) 350, 524
CfoI GCGC 2 cut(s) 466, 617
Cfr13I GGNCC 2 cut(s) 185, 594
CviAII CATG 1 cut(s) 470
CviJI RGCY 5 cut(s) 17, 26, 358, 532, 595
CviKI_1 RGCY 5 cut(s) 17, 26, 358, 532, 595
DdeI CTNAG 3 cut(s) 27, 56, 654
DpnI GATC 6 cut(s) 54, 61, 153, 348, 445, 488
DpnII GATC 6 cut(s) 52, 59, 151, 346, 443, 486
Eam1104I CTCTTC 2 cut(s) 186, 564
EarI CTCTTC 2 cut(s) 186, 564
Eco32I GATATC 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 185
Eco57I CTGAAG 1 cut(s) 285
EcoNI CCTNNNNNAGG 1 cut(s) 299
EcoRI GAATTC 2 cut(s) 283, 457
EcoRII CCWGG 1 cut(s) 45
EcoRV GATATC 1 cut(s) 36
Esp3I CGTCTC 1 cut(s) 159
FaeI CATG 1 cut(s) 473
FaiI YATR 2 cut(s) 77, 471
FatI CATG 1 cut(s) 469
FbaI TGATCA 1 cut(s) 151
FokI GGATG 4 cut(s) 62, 161, 234, 408
GlaI GCGC 2 cut(s) 465, 616
HaeII RGCGCY 1 cut(s) 618
HaeIII GGCC 1 cut(s) 595
HapII CCGG 1 cut(s) 183
HhaI GCGC 2 cut(s) 466, 617
Hin1II CATG 1 cut(s) 473
Hin6I GCGC 2 cut(s) 464, 615
HinP1I GCGC 2 cut(s) 464, 615
HindIII AAGCTT 2 cut(s) 356, 530
HinfI GANTC 4 cut(s) 41, 113, 572, 587
HpaII CCGG 1 cut(s) 183
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 8 cut(s) 40, 57, 241, 278, 346, 415, 520, 664
Hpy188III TCNNGA 3 cut(s) 11, 94, 183
HpyAV CCTTC 1 cut(s) 260
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 3 cut(s) 334, 452, 508
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 472, 538
HpyF3I CTNAG 3 cut(s) 27, 56, 654
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 1 cut(s) 473
HspAI GCGC 2 cut(s) 464, 615
Kpn2I TCCGGA 1 cut(s) 182
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 6 cut(s) 52, 59, 151, 346, 443, 486
LmnI GCTCC 1 cut(s) 203
LweI GCATC 3 cut(s) 250, 424, 640
MaeII ACGT 1 cut(s) 82
MaeIII GTNAC 3 cut(s) 83, 220, 394
MalI GATC 6 cut(s) 54, 61, 153, 348, 445, 488
MboI GATC 6 cut(s) 52, 59, 151, 346, 443, 486
MboII GAAGA 6 cut(s) 203, 269, 443, 572, 581, 596
MflI RGATCY 3 cut(s) 59, 346, 486
MluCI AATT 3 cut(s) 173, 283, 457
MlyI GAGTC 1 cut(s) 581
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 8 cut(s) 7, 22, 73, 133, 187, 358, 371, 374
MroI TCCGGA 1 cut(s) 182
MroXI GAANNNNTTC 1 cut(s) 283
MseI TTAA 1 cut(s) 636
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 47
MwoI GCNNNNNNNGC 3 cut(s) 23, 472, 538
NdeII GATC 6 cut(s) 52, 59, 151, 346, 443, 486
NlaIII CATG 1 cut(s) 473
NlaIV GGNNCC 1 cut(s) 596
NmeAIII GCCGAG 1 cut(s) 571
NmuCI GTSAC 2 cut(s) 83, 394
PdmI GAANNNNTTC 1 cut(s) 283
PfeI GAWTC 3 cut(s) 41, 113, 587
PflFI GACNNNGTC 1 cut(s) 89
PleI GAGTC 1 cut(s) 580
PpsI GAGTC 1 cut(s) 580
Ppu21I YACGTR 1 cut(s) 83
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 596
PspPI GGNCC 2 cut(s) 185, 594
PstNI CAGNNNCTG 2 cut(s) 350, 524
PsuI RGATCY 3 cut(s) 59, 346, 486
PsyI GACNNNGTC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 636
Sau3AI GATC 6 cut(s) 52, 59, 151, 346, 443, 486
Sau96I GGNCC 2 cut(s) 185, 594
SchI GAGTC 1 cut(s) 581
ScrFI CCNGG 1 cut(s) 47
SetI ASST 6 cut(s) 28, 33, 85, 297, 360, 534
SfaNI GCATC 3 cut(s) 250, 424, 640
SinI GGWCC 1 cut(s) 185
SmlI CTYRAG 2 cut(s) 296, 438
SmoI CTYRAG 2 cut(s) 296, 438
Sse9I AATT 3 cut(s) 173, 283, 457
StyD4I CCNGG 1 cut(s) 45
TaiI ACGT 1 cut(s) 85
TaqI TCGA 3 cut(s) 138, 386, 429
TasI AATT 3 cut(s) 173, 283, 457
TfiI GAWTC 3 cut(s) 41, 113, 587
Tru1I TTAA 1 cut(s) 636
Tru9I TTAA 1 cut(s) 636
TscAI CASTG 4 cut(s) 322, 336, 459, 510
TseFI GTSAC 2 cut(s) 83, 394
Tsp45I GTSAC 2 cut(s) 83, 394
TspDTI ATGAA 2 cut(s) 236, 410
TspRI CASTG 4 cut(s) 322, 336, 459, 510
Tth111I GACNNNGTC 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 185
XagI CCTNNNNNAGG 1 cut(s) 299
XapI RAATTY 2 cut(s) 283, 457
XcmI CCANNNNNNNNNTGG 2 cut(s) 14, 125
XmnI GAANNNNTTC 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.