Rmu_sc0006168.1_g000021

KH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006168.1
N/A
Physical Location & Seq
Forward (+)
53071 .. 53664
594 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 351 bp
atgggcaggaatagttccggaaatcgctcccattctcagtcctattactccgacaacggcggaggaggcgccggcgacaagagaagaaaccccggcaaggaaagagagcagttcatcatcgacatcgaggacatagtttactggtacttgtgcccggtgaagaaaatcatgagcataatcagaagtggaggagagattgtgaagcaacttagggtcgacaccaagtccaagattagaattggcgaaatggtgccgggtaccgatgagagagtcgtgactatctacaacgccagtgacgagaccaatgggtttgaggacagtcagaatttcgaatctaggcagcccatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

116

Amino Acids

13.08

Weight (kDa)

6.59

Isoelectric Point (pI)

53.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 50 - 95 2.3e-07 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 257
AccB1I GGYRCC 3 cut(s) 68, 250, 257
AccI GTMKAC 1 cut(s) 216
AccIII TCCGGA 1 cut(s) 17
AciI CCGC 1 cut(s) 60
AcsI RAATTY 1 cut(s) 325
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 2 cut(s) 146, 259
AfiI CCNNNNNNNGG 1 cut(s) 97
AhdI GACNNNNNGTC 1 cut(s) 223
Alw26I GTCTC 1 cut(s) 293
Aor13HI TCCGGA 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 340
ApoI RAATTY 1 cut(s) 325
Asp718I GGTACC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 71
AsuC2I CCSGG 3 cut(s) 93, 155, 255
AsuHPI GGTGA 1 cut(s) 169
AsuII TTCGAA 1 cut(s) 330
BaeGI GKGCMC 1 cut(s) 155
BanI GGYRCC 3 cut(s) 68, 250, 257
BceAI ACGGC 1 cut(s) 73
BcnI CCSGG 3 cut(s) 93, 155, 255
BcoDI GTCTC 1 cut(s) 293
BfaI CTAG 1 cut(s) 336
BfoI RGCGCY 1 cut(s) 72
BisI GCNGC 1 cut(s) 341
BlsI GCNGC 1 cut(s) 342
Bme1390I CCNGG 3 cut(s) 93, 155, 255
BmeRI GACNNNNNGTC 1 cut(s) 223
BmiI GGNNCC 3 cut(s) 70, 252, 259
BmrFI CCNGG 3 cut(s) 93, 155, 255
Bpu14I TTCGAA 1 cut(s) 330
BpuMI CCSGG 3 cut(s) 93, 155, 255
BsaHI GRCGYC 1 cut(s) 69
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 91
BsaWI WCCGGW 1 cut(s) 17
BsaXI ACNNNNNCTCC 2 cut(s) 183, 213
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 2 cut(s) 146, 291
BseAI TCCGGA 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 50
BseNI ACTGG 2 cut(s) 146, 291
BseRI GAGGAG 2 cut(s) 78, 204
BseSI GKGCMC 1 cut(s) 155
BshNI GGYRCC 3 cut(s) 68, 250, 257
BsiSI CCGG 5 cut(s) 18, 72, 93, 155, 254
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 293
Bso31I GGTCTC 1 cut(s) 293
Bsp119I TTCGAA 1 cut(s) 330
Bsp1286I GDGCHC 1 cut(s) 155
Bsp13I TCCGGA 1 cut(s) 17
BspACI CCGC 1 cut(s) 60
BspCNI CTCAG 1 cut(s) 49
BspEI TCCGGA 1 cut(s) 17
BspHI TCATGA 1 cut(s) 168
BspLI GGNNCC 3 cut(s) 70, 252, 259
BspT104I TTCGAA 1 cut(s) 330
BspT107I GGYRCC 3 cut(s) 68, 250, 257
BspTNI GGTCTC 1 cut(s) 293
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 2 cut(s) 146, 291
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 91
BssNI GRCGYC 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 320
BstACI GRCGYC 1 cut(s) 69
BstBI TTCGAA 1 cut(s) 330
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 2 cut(s) 36, 209
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 1 cut(s) 71
BstMAI GTCTC 1 cut(s) 293
BstMWI GCNNNNNNNGC 1 cut(s) 66
BstSCI CCNGG 3 cut(s) 91, 153, 253
BstSLI GKGCMC 1 cut(s) 155
BtsIMutI CAGTG 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 73
CciI TCATGA 1 cut(s) 168
CfoI GCGC 1 cut(s) 71
Cfr10I RCCGGY 1 cut(s) 71
Csp6I GTAC 2 cut(s) 145, 258
CviAII CATG 1 cut(s) 169
CviJI RGCY 1 cut(s) 343
CviKI_1 RGCY 1 cut(s) 343
CviQI GTAC 2 cut(s) 145, 258
DdeI CTNAG 2 cut(s) 36, 209
DinI GGCGCC 1 cut(s) 70
DriI GACNNNNNGTC 1 cut(s) 223
Eam1105I GACNNNNNGTC 1 cut(s) 223
EciI GGCGGA 1 cut(s) 75
Eco31I GGTCTC 1 cut(s) 293
EgeI GGCGCC 1 cut(s) 70
EheI GGCGCC 1 cut(s) 70
FaeI CATG 1 cut(s) 172
FaiI YATR 3 cut(s) 134, 170, 176
FatI CATG 1 cut(s) 168
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 1 cut(s) 341
Fsp4HI GCNGC 1 cut(s) 341
FspBI CTAG 1 cut(s) 336
GlaI GCGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 341
HaeII RGCGCY 1 cut(s) 72
HapII CCGG 5 cut(s) 18, 72, 93, 155, 254
HhaI GCGC 1 cut(s) 71
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 1 cut(s) 172
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 2 cut(s) 270, 332
HpaII CCGG 5 cut(s) 18, 72, 93, 155, 254
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 2 cut(s) 139, 217
Hpy188I TCNGA 3 cut(s) 52, 182, 324
Hpy188III TCNNGA 3 cut(s) 18, 169, 274
Hpy8I GTNNAC 2 cut(s) 139, 217
HpyCH4III ACNGT 1 cut(s) 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 66
HpyF3I CTNAG 2 cut(s) 36, 209
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 1 cut(s) 172
HspAI GCGC 1 cut(s) 69
KasI GGCGCC 1 cut(s) 68
Kpn2I TCCGGA 1 cut(s) 17
KpnI GGTACC 1 cut(s) 261
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
LmnI GCTCC 1 cut(s) 32
LpnPI CCDG 7 cut(s) 31, 85, 106, 127, 168, 267, 304
MaeI CTAG 1 cut(s) 336
MaeIII GTNAC 2 cut(s) 274, 293
MboII GAAGA 2 cut(s) 96, 172
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 2 cut(s) 237, 325
Mly113I GGCGCC 1 cut(s) 69
MlyI GAGTC 1 cut(s) 279
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 5 cut(s) 56, 59, 121, 182, 307
MreI CGCCGGCG 1 cut(s) 71
MroI TCCGGA 1 cut(s) 17
MroNI GCCGGC 1 cut(s) 71
MspI CCGG 5 cut(s) 18, 72, 93, 155, 254
MspR9I CCNGG 3 cut(s) 93, 155, 255
MwoI GCNNNNNNNGC 1 cut(s) 66
NaeI GCCGGC 1 cut(s) 73
NarI GGCGCC 1 cut(s) 69
NciI CCSGG 3 cut(s) 93, 155, 255
NgoMIV GCCGGC 1 cut(s) 71
NlaIII CATG 1 cut(s) 172
NlaIV GGNNCC 3 cut(s) 70, 252, 259
NmuCI GTSAC 2 cut(s) 274, 293
NspV TTCGAA 1 cut(s) 330
PagI TCATGA 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PdiI GCCGGC 1 cut(s) 73
PfeI GAWTC 1 cut(s) 332
PkrI GCNGC 1 cut(s) 342
PleI GAGTC 1 cut(s) 278
PluTI GGCGCC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 278
PspN4I GGNNCC 3 cut(s) 70, 252, 259
RsaI GTAC 2 cut(s) 146, 259
RsaNI GTAC 2 cut(s) 145, 258
SalI GTCGAC 1 cut(s) 215
SatI GCNGC 1 cut(s) 341
SchI GAGTC 1 cut(s) 279
ScrFI CCNGG 3 cut(s) 93, 155, 255
SduI GDGCHC 1 cut(s) 155
SfoI GGCGCC 1 cut(s) 70
SfuI TTCGAA 1 cut(s) 330
SgrAI CRCCGGYG 1 cut(s) 71
Sse9I AATT 2 cut(s) 237, 325
SsiI CCGC 1 cut(s) 60
SspDI GGCGCC 1 cut(s) 68
SspMI CTAG 1 cut(s) 336
StyD4I CCNGG 3 cut(s) 91, 153, 253
TaaI ACNGT 1 cut(s) 320
TaqI TCGA 4 cut(s) 120, 126, 216, 330
TasI AATT 2 cut(s) 237, 325
TfiI GAWTC 1 cut(s) 332
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 2 cut(s) 274, 293
TseI GCWGC 1 cut(s) 340
Tsp45I GTSAC 2 cut(s) 274, 293
TspDTI ATGAA 1 cut(s) 103
TspRI CASTG 1 cut(s) 298
XapI RAATTY 1 cut(s) 325
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.