Rmu_sc0006171.1_g000007

Heparan-alpha-glucosaminide N-acetyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006171.1
N/A
Physical Location & Seq
Reverse (-)
23729 .. 25885
2157 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 951 bp
atggccgacgattatgtcctcattccaaacggagaagaagaccatgcagtagtcatcgccgccactcccaagcctccacgtgtcgcctccctcgacgtcttccgcggcctctgcgtcttcgtgagctctccctctcttaaccttcatttcaaattgaaactgtccgaatcggcagcttttttaaccttccagtcaaactccctcccattcctcctcgatcaccgaccgagacgaagccggcacaaaagggtcctagaaatcccacgtggacgacggcgacggtggaggctgtggaggtccacgtggtctcggagcttgggctccgcggaggaggcggagtcggttgaagcggagtctgtggggttgaggctgcggcggcgagtggtgggtgtggttgttgaggtggtgggactggtgttgggttgggtgggtggggtggtgctggtgctgatgatggtggtggattacggcggctcgattattccggcgattgttcactcgccgtggaacggtctccacttggctgactttgtgatgccgttttttctcttcattgccggagtttctcttgctctggtctacaagagagtgactaacagagttgaagctacatggaaggccgtgtttcgggcccttaaactttttctcttaggtgttcttcttcaaggtggttattttcatggagtgagttccttgacttatggagttgacattgaaagaatacggtggtttggcattttgcagaggatagccattggatatattgttgcggccttatgcgaaatctggctttcacatcgcacctcgagggaagtgaggtttttcaggagctattactggcactggtgtcatctttttgttatcagcaatatacgctgggttgctgtatggtttgtatgttccagattgggaattcaaagcatcaacacctacctctttgtctccttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00531 ko01100 ko04142 map00531 map01100 map04142
Pfam Domains
Protein Families
DUF1624

Protein Analysis

316

Amino Acids

36.13

Weight (kDa)

10.29

Isoelectric Point (pI)

55.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 14
AatII GACGTC 1 cut(s) 99
AbsI CCTCGAGG 1 cut(s) 805
AccI GTMKAC 1 cut(s) 579
AccII CGCG 2 cut(s) 105, 326
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 912
AcvI CACGTG 3 cut(s) 80, 266, 303
AcyI GRCGYC 1 cut(s) 96
AfiI CCNNNNNNNGG 2 cut(s) 509, 627
AflIII ACRYGT 1 cut(s) 79
AgsI TTSAA 7 cut(s) 151, 157, 347, 605, 665, 716, 917
AluBI AGCT 5 cut(s) 126, 176, 315, 608, 831
AluI AGCT 5 cut(s) 126, 176, 315, 608, 831
Alw21I GWGCWC 1 cut(s) 128
Alw26I GTCTC 4 cut(s) 223, 312, 518, 946
Ama87I CYCGRG 1 cut(s) 805
AoxI GGCC 5 cut(s) 3, 106, 618, 630, 771
ApaI GGGCCC 1 cut(s) 634
ApeKI GCWGC 2 cut(s) 173, 370
ApoI RAATTY 1 cut(s) 912
AspS9I GGNCC 4 cut(s) 250, 297, 630, 631
AsuHPI GGTGA 1 cut(s) 212
AvaI CYCGRG 1 cut(s) 805
AvaII GGWCC 2 cut(s) 250, 297
BaeGI GKGCMC 1 cut(s) 634
BanII GRGCYC 3 cut(s) 128, 323, 634
BbrPI CACGTG 3 cut(s) 80, 266, 303
BbsI GAAGAC 3 cut(s) 45, 91, 109
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 2 cut(s) 185, 357
BccI CCATC 1 cut(s) 448
BceAI ACGGC 5 cut(s) 290, 484, 487, 523, 605
BcoDI GTCTC 4 cut(s) 223, 312, 518, 946
BfaI CTAG 1 cut(s) 254
BisI GCNGC 8 cut(s) 60, 106, 174, 371, 374, 377, 472, 771
BlsI GCNGC 8 cut(s) 61, 107, 175, 372, 375, 378, 473, 772
Bme18I GGWCC 2 cut(s) 250, 297
BmeT110I CYCGRG 1 cut(s) 805
BmgT120I GGNCC 4 cut(s) 250, 297, 630, 631
BmiI GGNNCC 3 cut(s) 251, 322, 632
BmsI GCATC 2 cut(s) 525, 930
BpiI GAAGAC 3 cut(s) 45, 91, 109
BsaAI YACGTR 3 cut(s) 80, 266, 303
BsaHI GRCGYC 1 cut(s) 96
BsaI GGTCTC 2 cut(s) 312, 518
BsaJI CCNNGG 3 cut(s) 103, 324, 503
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bsc4I CCNNNNNNNGG 2 cut(s) 509, 627
Bse118I RCCGGY 1 cut(s) 237
Bse1I ACTGG 4 cut(s) 190, 417, 842, 848
Bse3DI GCAATG 1 cut(s) 552
BseDI CCNNGG 3 cut(s) 103, 324, 503
BseLI CCNNNNNNNGG 2 cut(s) 509, 627
BseMI GCAATG 1 cut(s) 552
BseNI ACTGG 4 cut(s) 190, 417, 842, 848
BseRI GAGGAG 2 cut(s) 203, 344
BseSI GKGCMC 1 cut(s) 634
BseXI GCAGC 2 cut(s) 185, 357
BseYI CCCAGC 1 cut(s) 876
Bsh1236I CGCG 2 cut(s) 105, 326
Bsh1285I CGRYCG 1 cut(s) 227
BshFI GGCC 5 cut(s) 5, 108, 620, 632, 773
BsiEI CGRYCG 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 128
BsiHKCI CYCGRG 1 cut(s) 805
BsiSI CCGG 3 cut(s) 238, 485, 558
BslFI GGGAC 1 cut(s) 423
BslI CCNNNNNNNGG 2 cut(s) 509, 627
BsmAI GTCTC 4 cut(s) 223, 312, 518, 946
BsmBI CGTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 423
BsnI GGCC 5 cut(s) 5, 108, 620, 632, 773
Bso31I GGTCTC 2 cut(s) 312, 518
BsoBI CYCGRG 1 cut(s) 805
Bsp120I GGGCCC 1 cut(s) 630
Bsp1286I GDGCHC 3 cut(s) 128, 323, 634
Bsp143I GATC 1 cut(s) 217
BspANI GGCC 5 cut(s) 5, 108, 620, 632, 773
BspFNI CGCG 2 cut(s) 105, 326
BspLI GGNNCC 3 cut(s) 251, 322, 632
BspTNI GGTCTC 2 cut(s) 312, 518
BsrDI GCAATG 1 cut(s) 552
BsrFI RCCGGY 1 cut(s) 237
BsrI ACTGG 4 cut(s) 190, 417, 842, 848
BssAI RCCGGY 1 cut(s) 237
BssECI CCNNGG 3 cut(s) 103, 324, 503
BssMI GATC 1 cut(s) 217
BssNI GRCGYC 1 cut(s) 96
Bst4CI ACNGT 4 cut(s) 162, 282, 512, 726
Bst6I CTCTTC 1 cut(s) 554
BstACI GRCGYC 1 cut(s) 96
BstBAI YACGTR 3 cut(s) 80, 266, 303
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 1 cut(s) 649
BstDSI CCRYGG 3 cut(s) 103, 324, 503
BstFNI CGCG 2 cut(s) 105, 326
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 4 cut(s) 223, 312, 518, 946
BstMBI GATC 1 cut(s) 217
BstMCI CGRYCG 1 cut(s) 227
BstMWI GCNNNNNNNGC 4 cut(s) 111, 332, 376, 873
BstSLI GKGCMC 1 cut(s) 634
BstUI CGCG 2 cut(s) 105, 326
BstV1I GCAGC 2 cut(s) 185, 357
BstV2I GAAGAC 3 cut(s) 45, 91, 109
BsuRI GGCC 5 cut(s) 5, 108, 620, 632, 773
BtgI CCRYGG 3 cut(s) 103, 324, 503
BtgZI GCGATG 2 cut(s) 40, 782
BtsIMutI CAGTG 1 cut(s) 841
Cac8I GCNNGC 1 cut(s) 239
Cfr10I RCCGGY 1 cut(s) 237
Cfr13I GGNCC 4 cut(s) 250, 297, 630, 631
Cfr42I CCGCGG 2 cut(s) 106, 327
CseI GACGC 1 cut(s) 103
CviAII CATG 3 cut(s) 44, 612, 680
DdeI CTNAG 1 cut(s) 649
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 554
EarI CTCTTC 1 cut(s) 554
EciI GGCGGA 1 cut(s) 350
Ecl136II GAGCTC 1 cut(s) 126
Eco24I GRGCYC 3 cut(s) 128, 323, 634
Eco31I GGTCTC 2 cut(s) 312, 518
Eco47I GGWCC 2 cut(s) 250, 297
Eco53kI GAGCTC 1 cut(s) 126
Eco72I CACGTG 3 cut(s) 80, 266, 303
Eco88I CYCGRG 1 cut(s) 805
EcoICRI GAGCTC 1 cut(s) 126
EcoO109I RGGNCCY 2 cut(s) 250, 631
EcoRI GAATTC 1 cut(s) 912
EcoT38I GRGCYC 3 cut(s) 128, 323, 634
Esp3I CGTCTC 1 cut(s) 223
FaeI CATG 3 cut(s) 47, 615, 683
FaqI GGGAC 1 cut(s) 423
FatI CATG 3 cut(s) 43, 611, 679
FblI GTMKAC 1 cut(s) 579
Fnu4HI GCNGC 8 cut(s) 60, 106, 174, 371, 374, 377, 472, 771
FriOI GRGCYC 3 cut(s) 128, 323, 634
Fsp4HI GCNGC 8 cut(s) 60, 106, 174, 371, 374, 377, 472, 771
FspBI CTAG 1 cut(s) 254
GluI GCNGC 8 cut(s) 60, 106, 174, 371, 374, 377, 472, 771
GsaI CCCAGC 1 cut(s) 880
HaeIII GGCC 5 cut(s) 5, 108, 620, 632, 773
HapII CCGG 3 cut(s) 238, 485, 558
HgaI GACGC 1 cut(s) 103
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 3 cut(s) 47, 615, 683
HincII GTYRAC 1 cut(s) 709
HindII GTYRAC 1 cut(s) 709
HinfI GANTC 3 cut(s) 167, 338, 353
HpaII CCGG 3 cut(s) 238, 485, 558
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 5 cut(s) 269, 300, 496, 580, 709
Hpy188I TCNGA 3 cut(s) 166, 312, 950
Hpy188III TCNNGA 3 cut(s) 121, 826, 903
Hpy8I GTNNAC 5 cut(s) 269, 300, 496, 580, 709
Hpy99I CGWCG 4 cut(s) 11, 98, 276, 282
HpyAV CCTTC 3 cut(s) 152, 196, 610
HpyCH4III ACNGT 4 cut(s) 162, 282, 512, 726
HpyCH4IV ACGT 4 cut(s) 79, 96, 265, 302
HpyCH4V TGCA 2 cut(s) 47, 742
HpyF10VI GCNNNNNNNGC 4 cut(s) 111, 332, 376, 873
HpyF3I CTNAG 1 cut(s) 649
HpySE526I ACGT 4 cut(s) 79, 96, 265, 302
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 3 cut(s) 47, 615, 683
KroI GCCGGC 1 cut(s) 237
KroNI GCCGGC 1 cut(s) 239
KspI CCGCGG 2 cut(s) 106, 327
Kzo9I GATC 1 cut(s) 217
LmnI GCTCC 3 cut(s) 312, 326, 828
Lsp1109I GCAGC 2 cut(s) 185, 357
LweI GCATC 2 cut(s) 525, 930
MaeI CTAG 1 cut(s) 254
MaeII ACGT 4 cut(s) 79, 96, 265, 302
MaeIII GTNAC 1 cut(s) 589
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 7 cut(s) 47, 50, 91, 109, 541, 650, 653
MhlI GDGCHC 3 cut(s) 128, 323, 634
MluCI AATT 2 cut(s) 152, 912
MlyI GAGTC 2 cut(s) 347, 362
MroNI GCCGGC 1 cut(s) 237
MseI TTAA 3 cut(s) 138, 182, 636
MspA1I CMGCKG 2 cut(s) 105, 326
MspI CCGG 3 cut(s) 238, 485, 558
MvnI CGCG 2 cut(s) 105, 326
MwoI GCNNNNNNNGC 4 cut(s) 111, 332, 376, 873
NaeI GCCGGC 1 cut(s) 239
NdeII GATC 1 cut(s) 217
NgoMIV GCCGGC 1 cut(s) 237
NlaIII CATG 3 cut(s) 47, 615, 683
NlaIV GGNNCC 3 cut(s) 251, 322, 632
NmuCI GTSAC 1 cut(s) 589
PaeR7I CTCGAG 1 cut(s) 805
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PdiI GCCGGC 1 cut(s) 239
PfeI GAWTC 1 cut(s) 167
PkrI GCNGC 8 cut(s) 61, 107, 175, 372, 375, 378, 473, 772
PleI GAGTC 2 cut(s) 346, 361
PmaCI CACGTG 3 cut(s) 80, 266, 303
PmlI CACGTG 3 cut(s) 80, 266, 303
PpsI GAGTC 2 cut(s) 346, 361
Ppu21I YACGTR 3 cut(s) 80, 266, 303
PpuMI RGGWCCY 1 cut(s) 250
Psp124BI GAGCTC 1 cut(s) 128
Psp5II RGGWCCY 1 cut(s) 250
PspCI CACGTG 3 cut(s) 80, 266, 303
PspFI CCCAGC 1 cut(s) 876
PspN4I GGNNCC 3 cut(s) 251, 322, 632
PspOMI GGGCCC 1 cut(s) 630
PspPI GGNCC 4 cut(s) 250, 297, 630, 631
PspPPI RGGWCCY 1 cut(s) 250
PspXI VCTCGAGB 1 cut(s) 805
SacI GAGCTC 1 cut(s) 128
SacII CCGCGG 2 cut(s) 106, 327
SaqAI TTAA 3 cut(s) 138, 182, 636
SatI GCNGC 8 cut(s) 60, 106, 174, 371, 374, 377, 472, 771
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 4 cut(s) 250, 297, 630, 631
SchI GAGTC 2 cut(s) 347, 362
SduI GDGCHC 3 cut(s) 128, 323, 634
SfaNI GCATC 2 cut(s) 525, 930
Sfr274I CTCGAG 1 cut(s) 805
Sfr303I CCGCGG 2 cut(s) 106, 327
SgrBI CCGCGG 2 cut(s) 106, 327
SinI GGWCC 2 cut(s) 250, 297
SlaI CTCGAG 1 cut(s) 805
SmlI CTYRAG 1 cut(s) 805
SmoI CTYRAG 1 cut(s) 805
Sse9I AATT 2 cut(s) 152, 912
SspMI CTAG 1 cut(s) 254
SstI GAGCTC 1 cut(s) 128
TaaI ACNGT 4 cut(s) 162, 282, 512, 726
TaiI ACGT 4 cut(s) 82, 99, 268, 305
TaqI TCGA 4 cut(s) 93, 216, 476, 806
TaqII GACCGA 1 cut(s) 241
TasI AATT 2 cut(s) 152, 912
TauI GCSGC 6 cut(s) 62, 108, 376, 379, 474, 773
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 3 cut(s) 138, 182, 636
Tru9I TTAA 3 cut(s) 138, 182, 636
TscAI CASTG 1 cut(s) 848
TseFI GTSAC 1 cut(s) 589
TseI GCWGC 2 cut(s) 173, 370
Tsp45I GTSAC 1 cut(s) 589
TspDTI ATGAA 3 cut(s) 134, 541, 668
TspGWI ACGGA 1 cut(s) 45
TspRI CASTG 1 cut(s) 848
VpaK11BI GGWCC 2 cut(s) 250, 297
XapI RAATTY 1 cut(s) 912
XhoI CTCGAG 1 cut(s) 805
XmiI GTMKAC 1 cut(s) 579
XspI CTAG 1 cut(s) 254
ZraI GACGTC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.