Rmu_sc0006184.1_g000018
NAC Family

Nascent polypeptide-associated complex subunit alpha-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006184.1
N/A
Physical Location & Seq
Forward (+)
114954 .. 117412
2459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006184.1_g000018.1.cds

Sequence Viewer

Length: 639 bp
atgggtccagataaaagaaagggtgccagcccaacagtgagcagtactagactgcaatttcaaccaaggttaaatgtcagattggtcatttcacaaaaccctgggagccacccgagtataaaagagtcggtttcagtccctgaagagtccgactttggggttttagggttttcagcgagacgacgcaatctctcaatctcttttgaactcttcaaatctagccatgactgctcagactcaggaagaactcctcgccgcccatctcgaacagcaaaccatcgattcacagtaaaaaagagcaagaatatcttatttgtgatatcgaaaccggatgttttcaagagcccaacttcagacacctatgttatctttggtgaggcaaagattgaggatttgagctcacaactgcagactcaggctgcagagcagtttaaagctcctgatctcagtcatgtgatttccaaaccagagacctcggccatagcccaggacgatgaagatgtagatgagaccggagtagagcccaaggatattgagttggtgatgacacaagcaggagtatctagatcaaaggctgtaaaggcactgaaggctgccgagggagacattgtttctgctatcatggaacttaccaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAC

Protein Analysis

212

Amino Acids

23.19

Weight (kDa)

7.85

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 23
AciI CCGC 1 cut(s) 256
AcoI YGGCCR 1 cut(s) 477
AcuI CTGAAG 3 cut(s) 162, 336, 608
AfaI GTAC 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 156
AgsI TTSAA 4 cut(s) 62, 206, 214, 340
AjnI CCWGG 2 cut(s) 100, 486
AluBI AGCT 2 cut(s) 399, 437
AluI AGCT 2 cut(s) 399, 437
Alw21I GWGCWC 1 cut(s) 401
Alw26I GTCTC 4 cut(s) 172, 464, 503, 597
AlwNI CAGNNNCTG 1 cut(s) 140
Ama87I CYCGRG 1 cut(s) 112
AoxI GGCC 1 cut(s) 477
ApeKI GCWGC 2 cut(s) 419, 593
AspS9I GGNCC 1 cut(s) 5
AsuHPI GGTGA 2 cut(s) 386, 553
AvaI CYCGRG 1 cut(s) 112
AvaII GGWCC 1 cut(s) 5
BanI GGYRCC 1 cut(s) 23
BanII GRGCYC 3 cut(s) 347, 401, 525
Bbv12I GWGCWC 1 cut(s) 401
BbvI GCAGC 2 cut(s) 406, 580
BccI CCATC 2 cut(s) 268, 285
BciT130I CCWGG 2 cut(s) 102, 488
BcoDI GTCTC 4 cut(s) 172, 464, 503, 597
BfaI CTAG 3 cut(s) 48, 219, 564
BfmI CTRYAG 2 cut(s) 407, 420
BisI GCNGC 3 cut(s) 256, 420, 594
BlsI GCNGC 3 cut(s) 257, 421, 595
BmcAI AGTACT 1 cut(s) 46
Bme1390I CCNGG 2 cut(s) 102, 488
Bme18I GGWCC 1 cut(s) 5
BmeT110I CYCGRG 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 3 cut(s) 6, 25, 107
BmrFI CCNGG 2 cut(s) 102, 488
Bsa29I ATCGAT 1 cut(s) 280
BsaI GGTCTC 2 cut(s) 464, 503
BsaJI CCNNGG 7 cut(s) 65, 100, 101, 474, 486, 525, 597
BsaWI WCCGGW 2 cut(s) 328, 512
BsaXI ACNNNNNCTCC 2 cut(s) 594, 624
Bsc4I CCNNNNNNNGG 1 cut(s) 156
BseBI CCWGG 2 cut(s) 102, 488
BseCI ATCGAT 1 cut(s) 280
BseDI CCNNGG 7 cut(s) 65, 100, 101, 474, 486, 525, 597
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 1 cut(s) 156
BseMII CTCAG 4 cut(s) 246, 252, 428, 460
BseRI GAGGAG 1 cut(s) 240
BseXI GCAGC 2 cut(s) 406, 580
BshFI GGCC 1 cut(s) 479
BshNI GGYRCC 1 cut(s) 23
BshVI ATCGAT 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 401
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 2 cut(s) 329, 513
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 156
BsmAI GTCTC 4 cut(s) 172, 464, 503, 597
BsmBI CGTCTC 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 1 cut(s) 479
Bso31I GGTCTC 2 cut(s) 464, 503
BsoBI CYCGRG 1 cut(s) 112
Bsp1286I GDGCHC 3 cut(s) 347, 401, 525
Bsp143I GATC 2 cut(s) 442, 566
BspACI CCGC 1 cut(s) 256
BspANI GGCC 1 cut(s) 479
BspCNI CTCAG 4 cut(s) 245, 251, 427, 459
BspDI ATCGAT 1 cut(s) 280
BspLI GGNNCC 3 cut(s) 6, 25, 107
BspMAI CTGCAG 2 cut(s) 411, 424
BspT107I GGYRCC 1 cut(s) 23
BspTNI GGTCTC 2 cut(s) 464, 503
BssECI CCNNGG 7 cut(s) 65, 100, 101, 474, 486, 525, 597
BssMI GATC 2 cut(s) 442, 566
BssT1I CCWWGG 2 cut(s) 65, 525
Bst2UI CCWGG 2 cut(s) 102, 488
Bst4CI ACNGT 2 cut(s) 37, 289
Bst6I CTCTTC 2 cut(s) 138, 215
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 4 cut(s) 232, 238, 414, 446
BstF5I GGATG 1 cut(s) 337
BstKTI GATC 2 cut(s) 445, 569
BstMAI GTCTC 4 cut(s) 172, 464, 503, 597
BstMBI GATC 2 cut(s) 442, 566
BstMWI GCNNNNNNNGC 3 cut(s) 228, 581, 590
BstNI CCWGG 2 cut(s) 102, 488
BstSCI CCNGG 2 cut(s) 100, 486
BstSFI CTRYAG 2 cut(s) 407, 420
BstV1I GCAGC 2 cut(s) 406, 580
Bsu15I ATCGAT 1 cut(s) 280
BsuRI GGCC 1 cut(s) 479
BsuTUI ATCGAT 1 cut(s) 280
BtsCI GGATG 1 cut(s) 337
BtsIMutI CAGTG 2 cut(s) 42, 584
Cac8I GCNNGC 1 cut(s) 28
CaiI CAGNNNCTG 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 5
ClaI ATCGAT 1 cut(s) 280
CseI GACGC 1 cut(s) 192
Csp6I GTAC 1 cut(s) 45
CviAII CATG 3 cut(s) 224, 452, 622
CviQI GTAC 1 cut(s) 45
DdeI CTNAG 4 cut(s) 232, 238, 414, 446
DpnI GATC 2 cut(s) 444, 568
DpnII GATC 2 cut(s) 442, 566
DraI TTTAAA 1 cut(s) 433
EaeI YGGCCR 1 cut(s) 477
Eam1104I CTCTTC 2 cut(s) 138, 215
EarI CTCTTC 2 cut(s) 138, 215
Ecl136II GAGCTC 1 cut(s) 399
Eco130I CCWWGG 2 cut(s) 65, 525
Eco24I GRGCYC 3 cut(s) 347, 401, 525
Eco31I GGTCTC 2 cut(s) 464, 503
Eco32I GATATC 1 cut(s) 321
Eco47I GGWCC 1 cut(s) 5
Eco53kI GAGCTC 1 cut(s) 399
Eco57I CTGAAG 3 cut(s) 162, 336, 608
Eco88I CYCGRG 1 cut(s) 112
EcoICRI GAGCTC 1 cut(s) 399
EcoRII CCWGG 2 cut(s) 100, 486
EcoRV GATATC 1 cut(s) 321
EcoT14I CCWWGG 2 cut(s) 65, 525
EcoT38I GRGCYC 3 cut(s) 347, 401, 525
ErhI CCWWGG 2 cut(s) 65, 525
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 3 cut(s) 227, 455, 625
FaiI YATR 6 cut(s) 119, 225, 363, 453, 482, 623
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FaqI GGGAC 1 cut(s) 122
FatI CATG 3 cut(s) 223, 451, 621
Fnu4HI GCNGC 3 cut(s) 256, 420, 594
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 3 cut(s) 347, 401, 525
Fsp4HI GCNGC 3 cut(s) 256, 420, 594
FspBI CTAG 3 cut(s) 48, 219, 564
GluI GCNGC 3 cut(s) 256, 420, 594
HaeIII GGCC 1 cut(s) 479
HapII CCGG 2 cut(s) 329, 513
HgaI GACGC 1 cut(s) 192
Hin1II CATG 3 cut(s) 227, 455, 625
HinfI GANTC 5 cut(s) 125, 146, 236, 282, 412
HpaII CCGG 2 cut(s) 329, 513
HphI GGTGA 2 cut(s) 386, 553
Hpy188I TCNGA 4 cut(s) 80, 151, 235, 355
Hpy188III TCNNGA 6 cut(s) 8, 240, 264, 340, 440, 564
Hpy99I CGWCG 1 cut(s) 186
HpyAV CCTTC 1 cut(s) 583
HpyCH4III ACNGT 2 cut(s) 37, 289
HpyCH4V TGCA 3 cut(s) 55, 409, 422
HpyF10VI GCNNNNNNNGC 3 cut(s) 228, 581, 590
HpyF3I CTNAG 4 cut(s) 232, 238, 414, 446
Hsp92II CATG 3 cut(s) 227, 455, 625
Kzo9I GATC 2 cut(s) 442, 566
LmnI GCTCC 2 cut(s) 105, 442
Lsp1109I GCAGC 2 cut(s) 406, 580
MaeI CTAG 3 cut(s) 48, 219, 564
MalI GATC 2 cut(s) 444, 568
MboI GATC 2 cut(s) 442, 566
MboII GAAGA 4 cut(s) 155, 202, 255, 509
MhlI GDGCHC 3 cut(s) 347, 401, 525
MluCI AATT 1 cut(s) 56
MlyI GAGTC 4 cut(s) 134, 155, 230, 406
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 5 cut(s) 261, 370, 382, 484, 592
MseI TTAA 2 cut(s) 71, 432
MspI CCGG 2 cut(s) 329, 513
MspR9I CCNGG 2 cut(s) 102, 488
MvaI CCWGG 2 cut(s) 102, 488
MwoI GCNNNNNNNGC 3 cut(s) 228, 581, 590
NdeII GATC 2 cut(s) 442, 566
NlaIII CATG 3 cut(s) 227, 455, 625
NlaIV GGNNCC 3 cut(s) 6, 25, 107
NmeAIII GCCGAG 2 cut(s) 455, 622
PasI CCCWGGG 1 cut(s) 101
PfeI GAWTC 1 cut(s) 282
PkrI GCNGC 3 cut(s) 257, 421, 595
PleI GAGTC 4 cut(s) 133, 154, 230, 406
PpsI GAGTC 4 cut(s) 133, 154, 230, 406
Psp124BI GAGCTC 1 cut(s) 401
Psp6I CCWGG 2 cut(s) 100, 486
PspGI CCWGG 2 cut(s) 100, 486
PspN4I GGNNCC 3 cut(s) 6, 25, 107
PspPI GGNCC 1 cut(s) 5
PstI CTGCAG 2 cut(s) 411, 424
PstNI CAGNNNCTG 1 cut(s) 140
RsaI GTAC 1 cut(s) 46
RsaNI GTAC 1 cut(s) 45
SacI GAGCTC 1 cut(s) 401
SaqAI TTAA 2 cut(s) 71, 432
SatI GCNGC 3 cut(s) 256, 420, 594
Sau3AI GATC 2 cut(s) 442, 566
Sau96I GGNCC 1 cut(s) 5
ScaI AGTACT 1 cut(s) 46
SchI GAGTC 4 cut(s) 134, 155, 230, 406
ScrFI CCNGG 2 cut(s) 102, 488
SduI GDGCHC 3 cut(s) 347, 401, 525
SetI ASST 5 cut(s) 71, 362, 401, 439, 476
SfcI CTRYAG 2 cut(s) 407, 420
SinI GGWCC 1 cut(s) 5
Sse9I AATT 1 cut(s) 56
SsiI CCGC 1 cut(s) 256
SspMI CTAG 3 cut(s) 48, 219, 564
SstI GAGCTC 1 cut(s) 401
StyD4I CCNGG 2 cut(s) 100, 486
StyI CCWWGG 2 cut(s) 65, 525
TaaI ACNGT 2 cut(s) 37, 289
TaqI TCGA 3 cut(s) 265, 280, 323
TasI AATT 1 cut(s) 56
TatI WGTACW 1 cut(s) 44
TauI GCSGC 1 cut(s) 258
TfiI GAWTC 1 cut(s) 282
Tru1I TTAA 2 cut(s) 71, 432
Tru9I TTAA 2 cut(s) 71, 432
TscAI CASTG 2 cut(s) 42, 591
TseI GCWGC 2 cut(s) 419, 593
TspDTI ATGAA 1 cut(s) 510
TspRI CASTG 2 cut(s) 42, 591
VpaK11BI GGWCC 1 cut(s) 5
XbaI TCTAGA 1 cut(s) 563
XspI CTAG 3 cut(s) 48, 219, 564
ZrmI AGTACT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.