Rmu_sc0006211.1_g000007

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006211.1
N/A
Physical Location & Seq
Forward (+)
42714 .. 45047
2334 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 936 bp
atggtcataggcactgtcaagaagggtaagcctgatctgatgaagaaggtcctgccagctgtcatttggaggcagcgcaagccatggcaccaaaaggatggtgtcttcatgtacttcgaaggtagaaagtttctgtacaagttaactcctcttgttgggttgatttgctcagtctgtgacatagatgcttacagtaatgtatgggctgatttgctcagtctgtacaagttaactcctcttgttgggttgatttgctcagtctctgacatagatgcttacattaatgaattaggatctgcaattactggtcttattgggaaggagtgtgctgatctgtggcctaggattgccgtagcagagtcagagtggaacattttgaatcagagaaccaggaatgggatgaagatcagcttgaagaattactgtgagagctggaggatgaatgtagagctgcacaacattagagagttccaagtggtgcctgaagagtgcataggatacgttggaaaatacgttacttcgactcagtacaaggtggactcagaaagtgctattgaggagtccattgtgtatctaagcactagctgtaatttgaagactgatggtagagatgtatggatttttgacatcgatgatacactgctctctactgtgccttactacaagggacatcatttcgggagggagcatcttagatcagccacaataaacaaccttctccatgttggcttctatgggtggacaagtctcattttaaggggtcctgaggatgaagtgaagggggtgcaagatttcaaagctgatgtgaggaaaaaattgacggttggtggatacagagtttggggcatattgggagatcaatatagcagcattgacggacttccaagagccaaaaggacgttcaaacttccgaacccattgtactatgtttcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

311

Amino Acids

35.48

Weight (kDa)

8.52

Isoelectric Point (pI)

27.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 136 - 231 3.8e-26 HAD superfamily, subfamily IIIB (Acid phosphatase)
Acid_phosphat_B PF03767 229 - 310 4e-20 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 87, 478
AclWI GGATC 1 cut(s) 301
AcuI CTGAAG 1 cut(s) 504
AfaI GTAC 5 cut(s) 113, 137, 224, 530, 923
AfiI CCNNNNNNNGG 3 cut(s) 155, 242, 396
AgsI TTSAA 5 cut(s) 379, 415, 595, 796, 904
AjnI CCWGG 1 cut(s) 389
AjuI GAANNNNNNNTTGG 2 cut(s) 884, 916
AluBI AGCT 6 cut(s) 59, 411, 432, 451, 585, 800
AluI AGCT 6 cut(s) 59, 411, 432, 451, 585, 800
Alw26I GTCTC 2 cut(s) 265, 752
AlwI GGATC 1 cut(s) 301
AlwNI CAGNNNCTG 1 cut(s) 263
AoxI GGCC 1 cut(s) 338
ApeKI GCWGC 3 cut(s) 73, 451, 867
AseI ATTAAT 1 cut(s) 282
AspA2I CCTAGG 1 cut(s) 341
AspLEI GCGC 1 cut(s) 78
AspS9I GGNCC 2 cut(s) 49, 761
AsuII TTCGAA 1 cut(s) 117
AvaII GGWCC 2 cut(s) 49, 761
AvrII CCTAGG 1 cut(s) 341
AxyI CCTNAGG 1 cut(s) 765
BanI GGYRCC 2 cut(s) 87, 478
BbsI GAAGAC 2 cut(s) 97, 602
BbvI GCAGC 3 cut(s) 85, 438, 879
BccI CCATC 2 cut(s) 92, 596
BceAI ACGGC 1 cut(s) 335
BciT130I CCWGG 1 cut(s) 391
BciVI GTATCC 2 cut(s) 491, 824
BcoDI GTCTC 2 cut(s) 265, 752
BfaI CTAG 2 cut(s) 342, 582
BfuI GTATCC 2 cut(s) 491, 824
BisI GCNGC 3 cut(s) 74, 452, 868
BlnI CCTAGG 1 cut(s) 341
BlsI GCNGC 3 cut(s) 75, 453, 869
Bme1390I CCNGG 1 cut(s) 391
Bme18I GGWCC 2 cut(s) 49, 761
BmgT120I GGNCC 2 cut(s) 49, 761
BmiI GGNNCC 3 cut(s) 89, 480, 762
BmrFI CCNGG 1 cut(s) 391
BmsI GCATC 3 cut(s) 175, 262, 697
BpiI GAAGAC 2 cut(s) 97, 602
BpmI CTGGAG 1 cut(s) 454
Bpu14I TTCGAA 1 cut(s) 117
Bsa29I ATCGAT 1 cut(s) 630
BsaBI GATNNNNATC 1 cut(s) 404
BsaJI CCNNGG 2 cut(s) 83, 341
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 242, 396
Bse1I ACTGG 1 cut(s) 310
Bse21I CCTNAGG 1 cut(s) 765
Bse8I GATNNNNATC 1 cut(s) 404
BseBI CCWGG 1 cut(s) 391
BseCI ATCGAT 1 cut(s) 630
BseDI CCNNGG 2 cut(s) 83, 341
BseGI GGATG 4 cut(s) 103, 405, 444, 775
BseJI GATNNNNATC 1 cut(s) 404
BseLI CCNNNNNNNGG 3 cut(s) 155, 242, 396
BseMII CTCAG 6 cut(s) 183, 229, 270, 539, 555, 756
BseNI ACTGG 1 cut(s) 310
BseRI GAGGAG 3 cut(s) 138, 225, 572
BseXI GCAGC 3 cut(s) 85, 438, 879
BsgI GTGCAG 1 cut(s) 437
BshFI GGCC 1 cut(s) 340
BshNI GGYRCC 2 cut(s) 87, 478
BshVI ATCGAT 1 cut(s) 630
BslFI GGGAC 1 cut(s) 681
BslI CCNNNNNNNGG 3 cut(s) 155, 242, 396
BsmAI GTCTC 2 cut(s) 265, 752
BsmFI GGGAC 1 cut(s) 681
BsnI GGCC 1 cut(s) 340
Bsp119I TTCGAA 1 cut(s) 117
Bsp1407I TGTACA 2 cut(s) 135, 222
Bsp143I GATC 6 cut(s) 34, 293, 331, 405, 695, 856
Bsp19I CCATGG 1 cut(s) 83
BspANI GGCC 1 cut(s) 340
BspCNI CTCAG 6 cut(s) 182, 228, 269, 538, 554, 757
BspDI ATCGAT 1 cut(s) 630
BspLI GGNNCC 3 cut(s) 89, 480, 762
BspPI GGATC 1 cut(s) 301
BspT104I TTCGAA 1 cut(s) 117
BspT107I GGYRCC 2 cut(s) 87, 478
BsrGI TGTACA 2 cut(s) 135, 222
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 2 cut(s) 83, 341
BssMI GATC 6 cut(s) 34, 293, 331, 405, 695, 856
BssT1I CCWWGG 2 cut(s) 83, 341
Bst2UI CCWGG 1 cut(s) 391
Bst4CI ACNGT 5 cut(s) 16, 194, 425, 652, 823
Bst6I CTCTTC 1 cut(s) 480
BstAUI TGTACA 2 cut(s) 135, 222
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 57, 80
BstDEI CTNAG 8 cut(s) 169, 215, 256, 525, 541, 575, 692, 765
BstDSI CCRYGG 1 cut(s) 83
BstF5I GGATG 4 cut(s) 103, 405, 444, 775
BstHHI GCGC 1 cut(s) 78
BstKTI GATC 6 cut(s) 37, 296, 334, 408, 698, 859
BstMAI GTCTC 2 cut(s) 265, 752
BstMBI GATC 6 cut(s) 34, 293, 331, 405, 695, 856
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstNI CCWGG 1 cut(s) 391
BstSCI CCNGG 1 cut(s) 389
BstV1I GCAGC 3 cut(s) 85, 438, 879
BstV2I GAAGAC 2 cut(s) 97, 602
BstX2I RGATCY 1 cut(s) 293
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 1 cut(s) 293
Bsu15I ATCGAT 1 cut(s) 630
Bsu36I CCTNAGG 1 cut(s) 765
BsuI GTATCC 2 cut(s) 491, 824
BsuRI GGCC 1 cut(s) 340
BsuTUI ATCGAT 1 cut(s) 630
BtgI CCRYGG 1 cut(s) 83
BtsCI GGATG 4 cut(s) 103, 405, 444, 775
BtsI GCAGTG 1 cut(s) 638
BtsIMutI CAGTG 2 cut(s) 12, 638
Cac8I GCNNGC 2 cut(s) 57, 80
CaiI CAGNNNCTG 1 cut(s) 263
CfoI GCGC 1 cut(s) 78
Cfr13I GGNCC 2 cut(s) 49, 761
ClaI ATCGAT 1 cut(s) 630
Csp6I GTAC 5 cut(s) 112, 136, 223, 529, 922
CviAII CATG 3 cut(s) 84, 109, 722
CviQI GTAC 5 cut(s) 112, 136, 223, 529, 922
DdeI CTNAG 8 cut(s) 169, 215, 256, 525, 541, 575, 692, 765
DpnI GATC 6 cut(s) 36, 295, 333, 407, 697, 858
DpnII GATC 6 cut(s) 34, 293, 331, 405, 695, 856
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco130I CCWWGG 2 cut(s) 83, 341
Eco47I GGWCC 2 cut(s) 49, 761
Eco57I CTGAAG 1 cut(s) 504
Eco81I CCTNAGG 1 cut(s) 765
EcoO109I RGGNCCY 2 cut(s) 49, 761
EcoRII CCWGG 1 cut(s) 389
EcoT14I CCWWGG 2 cut(s) 83, 341
ErhI CCWWGG 2 cut(s) 83, 341
FaeI CATG 3 cut(s) 87, 112, 725
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FaqI GGGAC 1 cut(s) 681
FatI CATG 3 cut(s) 83, 108, 721
Fnu4HI GCNGC 3 cut(s) 74, 452, 868
FokI GGATG 4 cut(s) 110, 412, 451, 782
Fsp4HI GCNGC 3 cut(s) 74, 452, 868
FspBI CTAG 2 cut(s) 342, 582
GlaI GCGC 1 cut(s) 77
GluI GCNGC 3 cut(s) 74, 452, 868
GsuI CTGGAG 1 cut(s) 454
HaeIII GGCC 1 cut(s) 340
HhaI GCGC 1 cut(s) 78
Hin1II CATG 3 cut(s) 87, 112, 725
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HincII GTYRAC 2 cut(s) 144, 231
HindII GTYRAC 2 cut(s) 144, 231
HinfI GANTC 5 cut(s) 359, 379, 523, 539, 560
HpaI GTTAAC 2 cut(s) 144, 231
Hpy166II GTNNAC 4 cut(s) 144, 231, 538, 741
Hpy188I TCNGA 6 cut(s) 39, 265, 364, 384, 544, 912
Hpy188III TCNNGA 4 cut(s) 19, 679, 764, 933
Hpy8I GTNNAC 4 cut(s) 144, 231, 538, 741
HpyAV CCTTC 6 cut(s) 16, 40, 113, 313, 725, 772
HpyCH4III ACNGT 5 cut(s) 16, 194, 425, 652, 823
HpyCH4IV ACGT 3 cut(s) 501, 513, 899
HpyCH4V TGCA 4 cut(s) 299, 454, 492, 787
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 8 cut(s) 169, 215, 256, 525, 541, 575, 692, 765
HpySE526I ACGT 3 cut(s) 501, 513, 899
Hsp92II CATG 3 cut(s) 87, 112, 725
HspAI GCGC 1 cut(s) 76
KspAI GTTAAC 2 cut(s) 144, 231
Kzo9I GATC 6 cut(s) 34, 293, 331, 405, 695, 856
LmnI GCTCC 1 cut(s) 685
LpnPI CCDG 9 cut(s) 45, 65, 69, 291, 376, 403, 418, 495, 777
Lsp1109I GCAGC 3 cut(s) 85, 438, 879
LweI GCATC 3 cut(s) 175, 262, 697
MaeI CTAG 2 cut(s) 342, 582
MaeII ACGT 3 cut(s) 501, 513, 899
MaeIII GTNAC 2 cut(s) 176, 514
MalI GATC 6 cut(s) 36, 295, 333, 407, 697, 858
MboI GATC 6 cut(s) 34, 293, 331, 405, 695, 856
MboII GAAGA 6 cut(s) 55, 97, 415, 427, 497, 607
MflI RGATCY 1 cut(s) 293
MluCI AATT 5 cut(s) 287, 300, 418, 589, 815
MlyI GAGTC 4 cut(s) 368, 517, 533, 569
MmeI TCCRAC 1 cut(s) 484
MnlI CCTC 8 cut(s) 63, 159, 246, 429, 550, 675, 760, 801
MseI TTAA 4 cut(s) 143, 230, 282, 755
MspA1I CMGCKG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 391
MvaI CCWGG 1 cut(s) 391
MwoI GCNNNNNNNGC 1 cut(s) 79
NcoI CCATGG 1 cut(s) 83
NdeII GATC 6 cut(s) 34, 293, 331, 405, 695, 856
NlaIII CATG 3 cut(s) 87, 112, 725
NlaIV GGNNCC 3 cut(s) 89, 480, 762
NmuCI GTSAC 1 cut(s) 176
NspV TTCGAA 1 cut(s) 117
PfeI GAWTC 1 cut(s) 379
PkrI GCNGC 3 cut(s) 75, 453, 869
PleI GAGTC 4 cut(s) 367, 517, 533, 568
PpsI GAGTC 4 cut(s) 367, 517, 533, 568
PpuMI RGGWCCY 2 cut(s) 49, 761
PshBI ATTAAT 1 cut(s) 282
Psp5II RGGWCCY 2 cut(s) 49, 761
Psp6I CCWGG 1 cut(s) 389
PspGI CCWGG 1 cut(s) 389
PspN4I GGNNCC 3 cut(s) 89, 480, 762
PspPI GGNCC 2 cut(s) 49, 761
PspPPI RGGWCCY 2 cut(s) 49, 761
PsrI GAACNNNNNNTAC 1 cut(s) 905
PstNI CAGNNNCTG 1 cut(s) 263
PsuI RGATCY 1 cut(s) 293
PvuII CAGCTG 1 cut(s) 59
RsaI GTAC 5 cut(s) 113, 137, 224, 530, 923
RsaNI GTAC 5 cut(s) 112, 136, 223, 529, 922
SaqAI TTAA 4 cut(s) 143, 230, 282, 755
SatI GCNGC 3 cut(s) 74, 452, 868
Sau3AI GATC 6 cut(s) 34, 293, 331, 405, 695, 856
Sau96I GGNCC 2 cut(s) 49, 761
SchI GAGTC 4 cut(s) 368, 517, 533, 569
ScrFI CCNGG 1 cut(s) 391
SfaNI GCATC 3 cut(s) 175, 262, 697
SfuI TTCGAA 1 cut(s) 117
SinI GGWCC 2 cut(s) 49, 761
Sse9I AATT 5 cut(s) 287, 300, 418, 589, 815
SspMI CTAG 2 cut(s) 342, 582
StyD4I CCNGG 1 cut(s) 389
StyI CCWWGG 2 cut(s) 83, 341
TaaI ACNGT 5 cut(s) 16, 194, 425, 652, 823
TaiI ACGT 3 cut(s) 504, 516, 902
TaqI TCGA 3 cut(s) 117, 521, 630
TasI AATT 5 cut(s) 287, 300, 418, 589, 815
TatI WGTACW 5 cut(s) 111, 135, 222, 528, 921
TfiI GAWTC 1 cut(s) 379
Tru1I TTAA 4 cut(s) 143, 230, 282, 755
Tru9I TTAA 4 cut(s) 143, 230, 282, 755
TscAI CASTG 2 cut(s) 19, 645
TseFI GTSAC 1 cut(s) 176
TseI GCWGC 3 cut(s) 73, 451, 867
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 6 cut(s) 56, 97, 300, 416, 455, 786
TspGWI ACGGA 1 cut(s) 891
TspRI CASTG 2 cut(s) 19, 645
VpaK11BI GGWCC 2 cut(s) 49, 761
VspI ATTAAT 1 cut(s) 282
XcmI CCANNNNNNNNNTGG 1 cut(s) 63
XmaJI CCTAGG 1 cut(s) 341
XspI CTAG 2 cut(s) 342, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.