Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006237.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

59688 .. 60052

Gene Structure 365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atggcctctctctccaaaccaccgctgctcgtccacaaccacctaacctccctcgctctgattggtcccgcaactctctccttccccatcgccaaaacgacgtcgctccgcacccgcctctgcgcgctgaagaccggggccgacggcggaagcagaaccgggcggcaggaggcggacgggccggagctgctgcggaagccggtggtgaaggacgtggacgtggacgtggacgggatttcggaggaagatgaaggtgaggaagggaaatgggttgattgggaagataagattctggaggacacggttccgctgagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901259 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3223

Protein Analysis

105

Amino Acids

11.37

Weight (kDa)

4.83

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	104
AccII	CGCG	1 cut(s)	125
AciI	CCGC	9 cut(s)	23, 69, 109, 115, 147, 163, 173, 193, 308
AcuI	CTGAAG	1 cut(s)	149
AcyI	GRCGYC	1 cut(s)	101
AjiI	CACGTC	3 cut(s)	214, 220, 226
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
AoxI	GGCC	3 cut(s)	3, 138, 179
ApeKI	GCWGC	3 cut(s)	25, 187, 190
AspLEI	GCGC	2 cut(s)	125, 127
AspS9I	GGNCC	3 cut(s)	65, 138, 179
AsuC2I	CCSGG	2 cut(s)	136, 160
AsuHPI	GGTGA	2 cut(s)	217, 266
AvaII	GGWCC	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	137
BbvI	GCAGC	3 cut(s)	12, 174, 177
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	160
BcnI	CCSGG	2 cut(s)	136, 160
BisI	GCNGC	4 cut(s)	26, 164, 188, 191
BlsI	GCNGC	4 cut(s)	27, 165, 189, 192
Bme1390I	CCNGG	2 cut(s)	136, 160
Bme18I	GGWCC	1 cut(s)	65
BmgBI	CACGTC	3 cut(s)	214, 220, 226
BmgT120I	GGNCC	3 cut(s)	65, 138, 179
BmiI	GGNNCC	3 cut(s)	67, 139, 306
BmrFI	CCNGG	2 cut(s)	136, 160
BpiI	GAAGAC	1 cut(s)	137
BpmI	CTGGAG	1 cut(s)	314
BpuMI	CCSGG	2 cut(s)	136, 160
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bse118I	RCCGGY	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	302
BsePI	GCGCGC	1 cut(s)	123
BseXI	GCAGC	3 cut(s)	12, 174, 177
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	3 cut(s)	5, 140, 181
BsiSI	CCGG	4 cut(s)	135, 159, 182, 200
BslFI	GGGAC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	51
BsnI	GGCC	3 cut(s)	5, 140, 181
BspACI	CCGC	9 cut(s)	23, 69, 109, 115, 147, 163, 173, 193, 308
BspANI	GGCC	3 cut(s)	5, 140, 181
BspCNI	CTCAG	1 cut(s)	303
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	3 cut(s)	67, 139, 306
BsrFI	RCCGGY	1 cut(s)	199
BssAI	RCCGGY	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	135
BssHII	GCGCGC	1 cut(s)	123
BssNI	GRCGYC	1 cut(s)	101
Bst4CI	ACNGT	1 cut(s)	304
BstACI	GRCGYC	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	1 cut(s)	311
BstFNI	CGCG	1 cut(s)	125
BstHHI	GCGC	2 cut(s)	125, 127
BstMWI	GCNNNNNNNGC	2 cut(s)	187, 196
BstSCI	CCNGG	2 cut(s)	134, 158
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	3 cut(s)	12, 174, 177
BstV2I	GAAGAC	1 cut(s)	137
BsuRI	GGCC	3 cut(s)	5, 140, 181
BtgZI	GCGATG	1 cut(s)	73
BtrI	CACGTC	3 cut(s)	214, 220, 226
Cac8I	GCNNGC	1 cut(s)	125
CfoI	GCGC	2 cut(s)	125, 127
Cfr10I	RCCGGY	1 cut(s)	199
Cfr13I	GGNCC	3 cut(s)	65, 138, 179
CviJI	RGCY	5 cut(s)	5, 140, 181, 187, 199
CviKI_1	RGCY	5 cut(s)	5, 140, 181, 187, 199
DdeI	CTNAG	1 cut(s)	311
EciI	GGCGGA	2 cut(s)	162, 188
Eco47I	GGWCC	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	149
FaqI	GGGAC	1 cut(s)	51
FauI	CCCGC	2 cut(s)	76, 122
Fnu4HI	GCNGC	4 cut(s)	26, 164, 188, 191
Fsp4HI	GCNGC	4 cut(s)	26, 164, 188, 191
GlaI	GCGC	2 cut(s)	124, 126
GluI	GCNGC	4 cut(s)	26, 164, 188, 191
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	3 cut(s)	5, 140, 181
HapII	CCGG	4 cut(s)	135, 159, 182, 200
HhaI	GCGC	2 cut(s)	125, 127
Hin1I	GRCGYC	1 cut(s)	101
Hin6I	GCGC	2 cut(s)	123, 125
HinP1I	GCGC	2 cut(s)	123, 125
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	4 cut(s)	135, 159, 182, 200
HphI	GGTGA	2 cut(s)	217, 266
Hpy166II	GTNNAC	4 cut(s)	34, 217, 223, 229
Hpy188I	TCNGA	2 cut(s)	60, 241
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	4 cut(s)	34, 217, 223, 229
Hpy99I	CGWCG	3 cut(s)	103, 106, 146
HpyAV	CCTTC	4 cut(s)	91, 202, 245, 254
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	4 cut(s)	101, 213, 219, 225
HpyF10VI	GCNNNNNNNGC	2 cut(s)	187, 196
HpyF3I	CTNAG	1 cut(s)	311
HpySE526I	ACGT	4 cut(s)	101, 213, 219, 225
Hsp92I	GRCGYC	1 cut(s)	101
HspAI	GCGC	2 cut(s)	123, 125
LmnI	GCTCC	2 cut(s)	111, 184
LpnPI	CCDG	6 cut(s)	148, 152, 172, 195, 213, 278
Lsp1109I	GCAGC	3 cut(s)	12, 174, 177
MaeII	ACGT	4 cut(s)	101, 213, 219, 225
MboII	GAAGA	3 cut(s)	142, 257, 293
MnlI	CCTC	8 cut(s)	16, 58, 62, 128, 163, 235, 250, 289
MspA1I	CMGCKG	2 cut(s)	25, 310
MspI	CCGG	4 cut(s)	135, 159, 182, 200
MspR9I	CCNGG	2 cut(s)	136, 160
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	2 cut(s)	187, 196
NciI	CCSGG	2 cut(s)	136, 160
NlaIV	GGNNCC	3 cut(s)	67, 139, 306
PauI	GCGCGC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	289
PkrI	GCNGC	4 cut(s)	27, 165, 189, 192
PspN4I	GGNNCC	3 cut(s)	67, 139, 306
PspPI	GGNCC	3 cut(s)	65, 138, 179
PteI	GCGCGC	1 cut(s)	123
SatI	GCNGC	4 cut(s)	26, 164, 188, 191
Sau96I	GGNCC	3 cut(s)	65, 138, 179
ScrFI	CCNGG	2 cut(s)	136, 160
SetI	ASST	8 cut(s)	45, 50, 104, 189, 216, 222, 228, 256
SinI	GGWCC	1 cut(s)	65
SsiI	CCGC	9 cut(s)	23, 69, 109, 115, 147, 163, 173, 193, 308
StyD4I	CCNGG	2 cut(s)	134, 158
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	4 cut(s)	104, 216, 222, 228
TauI	GCSGC	1 cut(s)	166
TfiI	GAWTC	1 cut(s)	289
TseI	GCWGC	3 cut(s)	25, 187, 190
TspDTI	ATGAA	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	65
ZraI	GACGTC	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.