Rmu_sc0006244.1_g000029

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006244.1
N/A
Physical Location & Seq
Reverse (-)
99130 .. 100537
1408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006244.1_g000029.1.cds

Sequence Viewer

Length: 954 bp
atgcaatctgaagtttcttgtagagctggatatctccagatgctcaaaacttgggaaactcccagagaacttggggaagatggagagtttggagtatttttgtatgaatggaacttctataagagacttgccaccctccctttcacttttgaaaaatcttcaaatattagagtcttgtggatcaccaataaagaaggaagatgggggcttctgtggttcatttgtaagaaagagtccatagcctttaggcttggtgttgcattctttggtttacgctcattgaagcagttagatctaagtgattgtaatctttgtcaaggaggtatcctcgatgacattggttgcttgtcctctgtacaacagttggatcttagtggaaataattttgttaccttcaagcatcaaatggctttccaatcttcatgtattccggttgtagaggtgccaaaggcttcagtaattgccagatcttccatcaaacagttcttgtcctgtttacaacagttgcatcttagtggagataattttgttaccttaccttcaagcattaaaaggctttccaatcttcatgtattccagttgcagaggagccaaaggcttcaacaattgccagatcttccatcaaacagttcattacatatatttgcagatgatttcagttcattggtaatgttgccacaaccatcagagttgaggagatcttccatcaaatcaagggtttttcttttacttttgccaattgctttggactggttgacggtgaaggctgttgtggcggcgtgcatcacagagacacaggtatttgcggtgtggattgggagtgttatgtacaacaggggtgatggagatggagactgggcctggcccaaaccaggcttgacgggccttgagtggaactttcccttggtgtctgccctcttgggcttagagttttgggctgggtttctgccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

317

Amino Acids

35.8

Weight (kDa)

7.55

Isoelectric Point (pI)

55.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 442
AciI CCGC 2 cut(s) 776, 806
AclWI GGATC 2 cut(s) 188, 375
AcuI CTGAAG 2 cut(s) 30, 438
AfaI GTAC 2 cut(s) 357, 830
AfiI CCNNNNNNNGG 1 cut(s) 872
AgsI TTSAA 6 cut(s) 152, 162, 283, 397, 543, 602
AjnI CCWGG 2 cut(s) 860, 871
AjuI GAANNNNNNNTTGG 2 cut(s) 887, 919
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
Alw26I GTCTC 3 cut(s) 118, 785, 846
AlwI GGATC 2 cut(s) 188, 375
AoxI GGCC 3 cut(s) 858, 863, 883
AspS9I GGNCC 3 cut(s) 858, 864, 883
AsuHPI GGTGA 3 cut(s) 175, 772, 851
BanI GGYRCC 1 cut(s) 442
BccI CCATC 8 cut(s) 74, 195, 482, 628, 691, 713, 836, 842
BciT130I CCWGG 2 cut(s) 862, 873
BciVI GTATCC 1 cut(s) 335
BcoDI GTCTC 3 cut(s) 118, 785, 846
BfuI GTATCC 1 cut(s) 335
BglII AGATCT 4 cut(s) 292, 467, 613, 698
BisI GCNGC 1 cut(s) 777
BlsI GCNGC 1 cut(s) 778
Bme1390I CCNGG 2 cut(s) 862, 873
BmgT120I GGNCC 3 cut(s) 858, 864, 883
BmiI GGNNCC 2 cut(s) 444, 590
BmrFI CCNGG 2 cut(s) 862, 873
BmrI ACTGGG 1 cut(s) 865
BmsI GCATC 4 cut(s) 30, 409, 517, 792
BmuI ACTGGG 1 cut(s) 865
BplI GAGNNNNNCTC 2 cut(s) 312, 344
BpmI CTGGAG 1 cut(s) 20
BpuEI CTTGAG 1 cut(s) 908
BsaBI GATNNNNATC 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 903
BsaWI WCCGGW 1 cut(s) 430
Bsc4I CCNNNNNNNGG 1 cut(s) 872
Bse1I ACTGG 3 cut(s) 577, 755, 860
Bse8I GATNNNNATC 1 cut(s) 306
BseBI CCWGG 2 cut(s) 862, 873
BseDI CCNNGG 1 cut(s) 903
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 1 cut(s) 872
BseNI ACTGG 3 cut(s) 577, 755, 860
BseRI GAGGAG 2 cut(s) 601, 709
BseYI CCCAGC 1 cut(s) 938
BshFI GGCC 3 cut(s) 860, 865, 885
BshNI GGYRCC 1 cut(s) 442
BsiSI CCGG 1 cut(s) 431
BslI CCNNNNNNNGG 1 cut(s) 872
BsmAI GTCTC 3 cut(s) 118, 785, 846
BsmI GAATGC 1 cut(s) 260
BsnI GGCC 3 cut(s) 860, 865, 885
Bsp1407I TGTACA 2 cut(s) 355, 828
Bsp143I GATC 6 cut(s) 180, 292, 367, 467, 613, 698
BspACI CCGC 2 cut(s) 776, 806
BspANI GGCC 3 cut(s) 860, 865, 885
BspLI GGNNCC 2 cut(s) 444, 590
BspPI GGATC 2 cut(s) 188, 375
BspT107I GGYRCC 1 cut(s) 442
BsrGI TGTACA 2 cut(s) 355, 828
BsrI ACTGG 3 cut(s) 577, 755, 860
BssECI CCNNGG 1 cut(s) 903
BssMI GATC 6 cut(s) 180, 292, 367, 467, 613, 698
BssT1I CCWWGG 1 cut(s) 903
Bst2UI CCWGG 2 cut(s) 862, 873
Bst4CI ACNGT 5 cut(s) 363, 483, 504, 629, 760
BstAUI TGTACA 2 cut(s) 355, 828
BstC8I GCNNGC 1 cut(s) 781
BstDEI CTNAG 4 cut(s) 296, 371, 512, 925
BstKTI GATC 6 cut(s) 183, 295, 370, 470, 616, 701
BstMAI GTCTC 3 cut(s) 118, 785, 846
BstMBI GATC 6 cut(s) 180, 292, 367, 467, 613, 698
BstMWI GCNNNNNNNGC 2 cut(s) 773, 882
BstNI CCWGG 2 cut(s) 862, 873
BstSCI CCNGG 2 cut(s) 860, 871
BstX2I RGATCY 5 cut(s) 292, 367, 467, 613, 698
BstYI RGATCY 5 cut(s) 292, 367, 467, 613, 698
BsuI GTATCC 1 cut(s) 335
BsuRI GGCC 3 cut(s) 860, 865, 885
Cac8I GCNNGC 1 cut(s) 781
Cfr13I GGNCC 3 cut(s) 858, 864, 883
Csp6I GTAC 2 cut(s) 356, 829
CviAII CATG 2 cut(s) 423, 569
CviQI GTAC 2 cut(s) 356, 829
DdeI CTNAG 4 cut(s) 296, 371, 512, 925
DpnI GATC 6 cut(s) 182, 294, 369, 469, 615, 700
DpnII GATC 6 cut(s) 180, 292, 367, 467, 613, 698
Eco130I CCWWGG 1 cut(s) 903
Eco32I GATATC 1 cut(s) 32
Eco57I CTGAAG 2 cut(s) 30, 438
EcoRII CCWGG 2 cut(s) 860, 871
EcoRV GATATC 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 903
ErhI CCWWGG 1 cut(s) 903
FaeI CATG 2 cut(s) 426, 572
FaiI YATR 8 cut(s) 105, 120, 239, 424, 570, 639, 641, 827
FatI CATG 2 cut(s) 422, 568
Fnu4HI GCNGC 1 cut(s) 777
Fsp4HI GCNGC 1 cut(s) 777
GluI GCNGC 1 cut(s) 777
GsaI CCCAGC 1 cut(s) 942
GsuI CTGGAG 1 cut(s) 20
HaeIII GGCC 3 cut(s) 860, 865, 885
HapII CCGG 1 cut(s) 431
Hin1II CATG 2 cut(s) 426, 572
HincII GTYRAC 1 cut(s) 756
HindII GTYRAC 1 cut(s) 756
HinfI GANTC 2 cut(s) 171, 233
HpaII CCGG 1 cut(s) 431
HphI GGTGA 3 cut(s) 175, 772, 851
Hpy166II GTNNAC 3 cut(s) 272, 497, 756
Hpy188I TCNGA 2 cut(s) 10, 688
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 3 cut(s) 272, 497, 756
HpyAV CCTTC 4 cut(s) 188, 403, 549, 757
HpyCH4III ACNGT 5 cut(s) 363, 483, 504, 629, 760
HpyCH4V TGCA 6 cut(s) 4, 260, 508, 583, 647, 783
HpyF10VI GCNNNNNNNGC 2 cut(s) 773, 882
HpyF3I CTNAG 4 cut(s) 296, 371, 512, 925
Hsp92II CATG 2 cut(s) 426, 572
Kzo9I GATC 6 cut(s) 180, 292, 367, 467, 613, 698
LmnI GCTCC 1 cut(s) 588
LweI GCATC 4 cut(s) 30, 409, 517, 792
MaeIII GTNAC 2 cut(s) 388, 529
MalI GATC 6 cut(s) 182, 294, 369, 469, 615, 700
MboI GATC 6 cut(s) 180, 292, 367, 467, 613, 698
MboII GAAGA 8 cut(s) 89, 150, 210, 411, 462, 557, 608, 693
MfeI CAATTG 2 cut(s) 605, 738
MflI RGATCY 5 cut(s) 292, 367, 467, 613, 698
MluCI AATT 5 cut(s) 382, 459, 523, 605, 738
MlyI GAGTC 2 cut(s) 180, 242
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 8 cut(s) 146, 314, 338, 361, 433, 579, 687, 926
MseI TTAA 1 cut(s) 549
MslI CAYNNNNRTG 1 cut(s) 513
MspI CCGG 1 cut(s) 431
MspR9I CCNGG 2 cut(s) 862, 873
MunI CAATTG 2 cut(s) 605, 738
Mva1269I GAATGC 1 cut(s) 260
MvaI CCWGG 2 cut(s) 862, 873
MwoI GCNNNNNNNGC 2 cut(s) 773, 882
NdeII GATC 6 cut(s) 180, 292, 367, 467, 613, 698
NlaIII CATG 2 cut(s) 426, 572
NlaIV GGNNCC 2 cut(s) 444, 590
PctI GAATGC 1 cut(s) 260
PkrI GCNGC 1 cut(s) 778
PleI GAGTC 2 cut(s) 179, 241
PpsI GAGTC 2 cut(s) 179, 241
Psp6I CCWGG 2 cut(s) 860, 871
PspFI CCCAGC 1 cut(s) 938
PspGI CCWGG 2 cut(s) 860, 871
PspN4I GGNNCC 2 cut(s) 444, 590
PspPI GGNCC 3 cut(s) 858, 864, 883
PsuI RGATCY 5 cut(s) 292, 367, 467, 613, 698
RsaI GTAC 2 cut(s) 357, 830
RsaNI GTAC 2 cut(s) 356, 829
RseI CAYNNNNRTG 1 cut(s) 513
SaqAI TTAA 1 cut(s) 549
SatI GCNGC 1 cut(s) 777
Sau3AI GATC 6 cut(s) 180, 292, 367, 467, 613, 698
Sau96I GGNCC 3 cut(s) 858, 864, 883
SchI GAGTC 2 cut(s) 180, 242
ScrFI CCNGG 2 cut(s) 862, 873
SetI ASST 7 cut(s) 28, 325, 395, 444, 536, 541, 801
SfaNI GCATC 4 cut(s) 30, 409, 517, 792
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 1 cut(s) 887
SmoI CTYRAG 1 cut(s) 887
Sse9I AATT 5 cut(s) 382, 459, 523, 605, 738
SsiI CCGC 2 cut(s) 776, 806
SspI AATATT 1 cut(s) 166
StyD4I CCNGG 2 cut(s) 860, 871
StyI CCWWGG 1 cut(s) 903
TaaI ACNGT 5 cut(s) 363, 483, 504, 629, 760
TaqI TCGA 1 cut(s) 330
TasI AATT 5 cut(s) 382, 459, 523, 605, 738
TatI WGTACW 2 cut(s) 355, 828
TauI GCSGC 1 cut(s) 779
Tru1I TTAA 1 cut(s) 549
Tru9I TTAA 1 cut(s) 549
TspDTI ATGAA 6 cut(s) 120, 208, 411, 557, 621, 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.