Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006244.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

216277 .. 217601

Gene Structure 1325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atggtgaagcgaggcttgcagcagtgtcagatgtgcggggtagcaggggatacagtggcagcgggcgtgcaaggcagcagaactgtggggctgcagagtgcgggatgctggcaggctgggactacaaggtcagtagtggggggggggcagcaggcacacgagtacacagaggctgcaggggcagcaggtgcggggctgcagcaggaggtgtggctagctcgggctagggcttgtggccgaattgcgtcaacatatgaatatttttggtcacatggaatgatttctgatgaaattggccttacaatcatgaacgattgtgattttgaggattatgaatttgcaacgcctcacagtgtcagcattgcatgcaataatgcaatagctacaaccaatagcatagttggcaagtatatagacaattacgatgtgatccttgaggtttgttatccatctatagcggagcatgatttgagactgcggaacgtggttactaagataagtgttggagttgatgtgtgtctgacatttgaatgccagttttatttgaaccttcctgaggttcagaaagcccttcatgcaaatcgtacaaacttgccttatagctggagaatgtgcagcgggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0030312 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

207

Amino Acids

22.48

Weight (kDa)

5.29

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	82 - 206	7.2e-13	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	176
AasI	GACNNNNNNGTC	1 cut(s)	127
Acc36I	ACCTGC	1 cut(s)	176
AciI	CCGC	7 cut(s)	36, 62, 101, 191, 458, 478, 618
AclWI	GGATC	1 cut(s)	424
AcoI	YGGCCR	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	335
AfaI	GTAC	2 cut(s)	164, 586
AfiI	CCNNNNNNNGG	1 cut(s)	556
AgsI	TTSAA	2 cut(s)	530, 547
AluBI	AGCT	3 cut(s)	218, 383, 603
AluI	AGCT	3 cut(s)	218, 383, 603
Alw26I	GTCTC	1 cut(s)	466
AlwI	GGATC	1 cut(s)	424
AlwNI	CAGNNNCTG	1 cut(s)	173
Ama87I	CYCGRG	1 cut(s)	219
AoxI	GGCC	2 cut(s)	235, 295
ApoI	RAATTY	1 cut(s)	335
Asp700I	GAANNNNTTC	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	16
AsuNHI	GCTAGC	1 cut(s)	214
AvaI	CYCGRG	1 cut(s)	219
AxyI	CCTNAGG	1 cut(s)	555
BauI	CACGAG	1 cut(s)	158
BbvI	GCAGC	9 cut(s)	31, 71, 78, 87, 160, 160, 183, 194, 211
BccI	CCATC	1 cut(s)	457
BciVI	GTATCC	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	466
BfaI	CTAG	2 cut(s)	215, 225
BfmI	CTRYAG	4 cut(s)	92, 174, 197, 453
BfuAI	ACCTGC	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	43
BmeT110I	CYCGRG	1 cut(s)	219
BmsI	GCATC	1 cut(s)	95
BmtI	GCTAGC	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	455
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	556
Bse1I	ACTGG	1 cut(s)	535
Bse21I	CCTNAGG	1 cut(s)	555
Bse3DI	GCAATG	1 cut(s)	360
BseGI	GGATG	1 cut(s)	110
BseLI	CCNNNNNNNGG	1 cut(s)	556
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	546
BseNI	ACTGG	1 cut(s)	535
BseXI	GCAGC	9 cut(s)	31, 71, 78, 87, 160, 160, 183, 194, 211
BseYI	CCCAGC	1 cut(s)	116
BshFI	GGCC	2 cut(s)	237, 297
BsiHKCI	CYCGRG	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	556
BsmAI	GTCTC	1 cut(s)	466
BsmFI	GGGAC	1 cut(s)	133
BsmI	GAATGC	1 cut(s)	536
BsnI	GGCC	2 cut(s)	237, 297
BsoBI	CYCGRG	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	429
BspACI	CCGC	7 cut(s)	36, 62, 101, 191, 458, 478, 618
BspANI	GGCC	2 cut(s)	237, 297
BspCNI	CTCAG	1 cut(s)	547
BspHI	TCATGA	1 cut(s)	306
BspMAI	CTGCAG	3 cut(s)	96, 178, 201
BspMI	ACCTGC	1 cut(s)	176
BspOI	GCTAGC	1 cut(s)	218
BspPI	GGATC	1 cut(s)	424
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	535
BssMI	GATC	1 cut(s)	429
BssSI	CACGAG	1 cut(s)	158
Bst2BI	CACGAG	1 cut(s)	158
Bst4CI	ACNGT	3 cut(s)	55, 85, 353
BstAPI	GCANNNNNTGC	2 cut(s)	188, 366
BstC8I	GCNNGC	8 cut(s)	17, 64, 68, 110, 114, 153, 216, 367
BstDEI	CTNAG	2 cut(s)	492, 555
BstENI	CCTNNNNNAGG	1 cut(s)	554
BstF5I	GGATG	1 cut(s)	110
BstKTI	GATC	1 cut(s)	432
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	1 cut(s)	429
BstMWI	GCNNNNNNNGC	8 cut(s)	16, 72, 179, 182, 188, 366, 402, 575
BstNSI	RCATGY	1 cut(s)	369
BstSFI	CTRYAG	4 cut(s)	92, 174, 197, 453
BstV1I	GCAGC	9 cut(s)	31, 71, 78, 87, 160, 160, 183, 194, 211
Bsu36I	CCTNAGG	1 cut(s)	555
BsuI	GTATCC	1 cut(s)	43
BsuRI	GGCC	2 cut(s)	237, 297
BtsCI	GGATG	1 cut(s)	110
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	3 cut(s)	29, 60, 358
BveI	ACCTGC	1 cut(s)	176
Cac8I	GCNNGC	8 cut(s)	17, 64, 68, 110, 114, 153, 216, 367
CaiI	CAGNNNCTG	1 cut(s)	173
CciI	TCATGA	1 cut(s)	306
CseI	GACGC	1 cut(s)	234
Csp6I	GTAC	2 cut(s)	163, 585
CviAII	CATG	5 cut(s)	272, 307, 366, 464, 575
CviQI	GTAC	2 cut(s)	163, 585
DdeI	CTNAG	2 cut(s)	492, 555
DpnI	GATC	1 cut(s)	431
DpnII	GATC	1 cut(s)	429
DrdI	GACNNNNNNGTC	1 cut(s)	127
DseDI	GACNNNNNNGTC	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	235
Eco81I	CCTNAGG	1 cut(s)	555
Eco88I	CYCGRG	1 cut(s)	219
EcoNI	CCTNNNNNAGG	1 cut(s)	554
FaeI	CATG	5 cut(s)	275, 310, 369, 467, 578
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	1 cut(s)	133
FatI	CATG	5 cut(s)	271, 306, 365, 463, 574
FauI	CCCGC	5 cut(s)	29, 55, 94, 184, 611
FauNDI	CATATG	1 cut(s)	253
FokI	GGATG	1 cut(s)	117
FspBI	CTAG	2 cut(s)	215, 225
GsaI	CCCAGC	1 cut(s)	120
HaeIII	GGCC	2 cut(s)	237, 297
HgaI	GACGC	1 cut(s)	234
Hin1II	CATG	5 cut(s)	275, 310, 369, 467, 578
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	165, 249
Hpy188I	TCNGA	4 cut(s)	30, 286, 522, 564
Hpy188III	TCNNGA	2 cut(s)	307, 554
Hpy8I	GTNNAC	2 cut(s)	165, 249
HpyAV	CCTTC	2 cut(s)	560, 581
HpyCH4III	ACNGT	3 cut(s)	55, 85, 353
HpyCH4IV	ACGT	1 cut(s)	483
HpyF10VI	GCNNNNNNNGC	8 cut(s)	16, 72, 179, 182, 188, 366, 402, 575
HpyF3I	CTNAG	2 cut(s)	492, 555
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	5 cut(s)	275, 310, 369, 467, 578
Kzo9I	GATC	1 cut(s)	429
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	9 cut(s)	31, 71, 78, 87, 160, 160, 183, 194, 211
LweI	GCATC	1 cut(s)	95
MaeI	CTAG	2 cut(s)	215, 225
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	2 cut(s)	267, 487
MalI	GATC	1 cut(s)	431
MboI	GATC	1 cut(s)	429
MluCI	AATT	4 cut(s)	240, 291, 335, 418
MmeI	TCCRAC	1 cut(s)	484
MnlI	CCTC	7 cut(s)	5, 163, 199, 319, 357, 430, 550
MroXI	GAANNNNTTC	1 cut(s)	280
MslI	CAYNNNNRTG	1 cut(s)	529
MspA1I	CMGCKG	2 cut(s)	62, 618
Mva1269I	GAATGC	1 cut(s)	536
MwoI	GCNNNNNNNGC	8 cut(s)	16, 72, 179, 182, 188, 366, 402, 575
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	1 cut(s)	429
NheI	GCTAGC	1 cut(s)	214
NlaIII	CATG	5 cut(s)	275, 310, 369, 467, 578
NmuCI	GTSAC	1 cut(s)	267
NspI	RCATGY	1 cut(s)	369
PaeI	GCATGC	1 cut(s)	369
PagI	TCATGA	1 cut(s)	306
PaqCI	CACCTGC	1 cut(s)	176
PctI	GAATGC	1 cut(s)	536
PdmI	GAANNNNTTC	1 cut(s)	280
PspFI	CCCAGC	1 cut(s)	116
PstI	CTGCAG	3 cut(s)	96, 178, 201
PstNI	CAGNNNCTG	1 cut(s)	173
RsaI	GTAC	2 cut(s)	164, 586
RsaNI	GTAC	2 cut(s)	163, 585
RseI	CAYNNNNRTG	1 cut(s)	529
Sau3AI	GATC	1 cut(s)	429
SfaNI	GCATC	1 cut(s)	95
SfcI	CTRYAG	4 cut(s)	92, 174, 197, 453
SmiMI	CAYNNNNRTG	1 cut(s)	529
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
SphI	GCATGC	1 cut(s)	369
Sse9I	AATT	4 cut(s)	240, 291, 335, 418
SsiI	CCGC	7 cut(s)	36, 62, 101, 191, 458, 478, 618
SspI	AATATT	1 cut(s)	260
SspMI	CTAG	2 cut(s)	215, 225
TaaI	ACNGT	3 cut(s)	55, 85, 353
TaiI	ACGT	1 cut(s)	486
TasI	AATT	4 cut(s)	240, 291, 335, 418
TatI	WGTACW	1 cut(s)	162
TscAI	CASTG	3 cut(s)	29, 60, 358
TseFI	GTSAC	1 cut(s)	267
Tsp45I	GTSAC	1 cut(s)	267
TspDTI	ATGAA	5 cut(s)	270, 303, 323, 348, 563
TspRI	CASTG	3 cut(s)	29, 60, 358
XagI	CCTNNNNNAGG	1 cut(s)	554
XapI	RAATTY	1 cut(s)	335
XceI	RCATGY	1 cut(s)	369
XmnI	GAANNNNTTC	1 cut(s)	280
XspI	CTAG	2 cut(s)	215, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.