Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006266.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

110902 .. 112110

Gene Structure 1209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atgactatcctcgttgagaagcctgaggtagtggccaaagtggaggaccagaatgaaaccagtgatttggtgttggatggtaggtttgtggtttcgaaagacgtagccggcaacgatgggtgtgtgaagcccgaagctttagtgtcgaacaatgagttcattacccctgaaatcaatgcatttggccagacattcagggaatacaatgcagagagtgaaaggcagaaaggtgtggaggaattctaccggttgaaccacattcaccaaacatatgatttcgtgaagaaaatgagagaggagtacagaaagctcaatcgagttgaaatgagcatatgggaatgctgtgaactcctcaatgaagttgtggacgacagtgatcccgatttggacgaaccccaaattgagcacttgttgcaaacagctgaagcaattcgaaaagactaccctgatgaagactggcttcacttgactgctcttattcatgatctcggaaaagtgttgctgcttccgagctcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016701 GO:0019752 GO:0019852 GO:0019853 GO:0042364 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046364 GO:0046394 GO:0050113 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00053 ko00562 map00053 map00562

Pfam Domains

Protein Families

MIOX

Protein Analysis

172

Amino Acids

19.9

Weight (kDa)

4.51

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIOX	PF05153	76 - 168	7e-43	Myo-inositol oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	371
AcoI	YGGCCR	2 cut(s)	33, 184
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	444
AfaI	GTAC	1 cut(s)	302
AgeI	ACCGGT	1 cut(s)	246
AgsI	TTSAA	2 cut(s)	253, 323
AluBI	AGCT	4 cut(s)	137, 310, 422, 513
AluI	AGCT	4 cut(s)	137, 310, 422, 513
Alw21I	GWGCWC	2 cut(s)	408, 515
AlwI	GGATC	1 cut(s)	371
AoxI	GGCC	2 cut(s)	33, 184
ApeKI	GCWGC	1 cut(s)	502
ApoI	RAATTY	1 cut(s)	239
AsiGI	ACCGGT	1 cut(s)	246
Asp700I	GAANNNNTTC	1 cut(s)	429
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	254
AsuII	TTCGAA	2 cut(s)	95, 433
AvaII	GGWCC	1 cut(s)	46
AxyI	CCTNAGG	1 cut(s)	24
BalI	TGGCCA	2 cut(s)	35, 186
BanII	GRGCYC	1 cut(s)	515
BbsI	GAAGAC	1 cut(s)	459
Bbv12I	GWGCWC	2 cut(s)	408, 515
BbvI	GCAGC	1 cut(s)	489
BccI	CCATC	2 cut(s)	71, 110
BisI	GCNGC	1 cut(s)	503
BlsI	GCNGC	1 cut(s)	504
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	459
Bpu14I	TTCGAA	2 cut(s)	95, 433
BsaWI	WCCGGW	1 cut(s)	246
Bse118I	RCCGGY	2 cut(s)	107, 246
Bse1I	ACTGG	2 cut(s)	60, 461
Bse21I	CCTNAGG	1 cut(s)	24
BseGI	GGATG	1 cut(s)	82
BseMII	CTCAG	1 cut(s)	15
BseNI	ACTGG	2 cut(s)	60, 461
BseRI	GAGGAG	2 cut(s)	311, 341
BseXI	GCAGC	1 cut(s)	489
BshFI	GGCC	2 cut(s)	35, 186
BshTI	ACCGGT	1 cut(s)	246
BsiHKAI	GWGCWC	2 cut(s)	408, 515
BsiSI	CCGG	2 cut(s)	108, 247
BsmI	GAATGC	1 cut(s)	344
BsnI	GGCC	2 cut(s)	35, 186
Bsp119I	TTCGAA	2 cut(s)	95, 433
Bsp1286I	GDGCHC	2 cut(s)	408, 515
Bsp143I	GATC	2 cut(s)	376, 484
BspANI	GGCC	2 cut(s)	35, 186
BspCNI	CTCAG	1 cut(s)	16
BspHI	TCATGA	1 cut(s)	481
BspPI	GGATC	1 cut(s)	371
BspT104I	TTCGAA	2 cut(s)	95, 433
BsrFI	RCCGGY	2 cut(s)	107, 246
BsrI	ACTGG	2 cut(s)	60, 461
BssAI	RCCGGY	2 cut(s)	107, 246
BssMI	GATC	2 cut(s)	376, 484
Bst4CI	ACNGT	1 cut(s)	374
BstAPI	GCANNNNNTGC	1 cut(s)	412
BstBI	TTCGAA	2 cut(s)	95, 433
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	2 cut(s)	379, 487
BstMBI	GATC	2 cut(s)	376, 484
BstMWI	GCNNNNNNNGC	1 cut(s)	412
BstV1I	GCAGC	1 cut(s)	489
BstV2I	GAAGAC	1 cut(s)	459
BstXI	CCANNNNNNTGG	1 cut(s)	67
Bsu36I	CCTNAGG	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	35, 186
BtsCI	GGATG	1 cut(s)	82
BtsIMutI	CAGTG	2 cut(s)	67, 379
Cac8I	GCNNGC	1 cut(s)	109
CciI	TCATGA	1 cut(s)	481
Cfr10I	RCCGGY	2 cut(s)	107, 246
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	301
CspAI	ACCGGT	1 cut(s)	246
CviAII	CATG	1 cut(s)	482
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	2 cut(s)	378, 486
DpnII	GATC	2 cut(s)	376, 484
EaeI	YGGCCR	2 cut(s)	33, 184
Ecl136II	GAGCTC	1 cut(s)	513
Eco24I	GRGCYC	1 cut(s)	515
Eco47I	GGWCC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	513
Eco57I	CTGAAG	1 cut(s)	444
Eco81I	CCTNAGG	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	513
EcoRI	GAATTC	1 cut(s)	239
EcoT22I	ATGCAT	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	515
FaeI	CATG	1 cut(s)	485
FaiI	YATR	5 cut(s)	271, 273, 332, 334, 483
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FatI	CATG	1 cut(s)	481
FauNDI	CATATG	2 cut(s)	271, 332
Fnu4HI	GCNGC	1 cut(s)	503
FokI	GGATG	1 cut(s)	89
FriOI	GRGCYC	1 cut(s)	515
Fsp4HI	GCNGC	1 cut(s)	503
GluI	GCNGC	1 cut(s)	503
HaeIII	GGCC	2 cut(s)	35, 186
HapII	CCGG	2 cut(s)	108, 247
Hin1II	CATG	1 cut(s)	485
HindIII	AAGCTT	1 cut(s)	135
HpaII	CCGG	2 cut(s)	108, 247
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	2 cut(s)	347, 367
Hpy188I	TCNGA	2 cut(s)	491, 510
Hpy188III	TCNNGA	3 cut(s)	280, 380, 482
Hpy8I	GTNNAC	2 cut(s)	347, 367
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	3 cut(s)	179, 209, 415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	412
HpyF3I	CTNAG	1 cut(s)	24
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	485
KroI	GCCGGC	1 cut(s)	107
KroNI	GCCGGC	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	376, 484
LmnI	GCTCC	1 cut(s)	518
Lsp1109I	GCAGC	1 cut(s)	489
MaeII	ACGT	1 cut(s)	102
MalI	GATC	2 cut(s)	378, 486
MboI	GATC	2 cut(s)	376, 484
MboII	GAAGA	2 cut(s)	295, 464
MhlI	GDGCHC	2 cut(s)	408, 515
MlsI	TGGCCA	2 cut(s)	35, 186
MluCI	AATT	3 cut(s)	239, 399, 429
MluNI	TGGCCA	2 cut(s)	35, 186
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	6 cut(s)	19, 20, 37, 229, 289, 362
Mox20I	TGGCCA	2 cut(s)	35, 186
Mph1103I	ATGCAT	1 cut(s)	181
MroNI	GCCGGC	1 cut(s)	107
MroXI	GAANNNNTTC	1 cut(s)	429
MscI	TGGCCA	2 cut(s)	35, 186
Msp20I	TGGCCA	2 cut(s)	35, 186
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	2 cut(s)	108, 247
Mva1269I	GAATGC	1 cut(s)	344
MwoI	GCNNNNNNNGC	1 cut(s)	412
NaeI	GCCGGC	1 cut(s)	109
NdeI	CATATG	2 cut(s)	271, 332
NdeII	GATC	2 cut(s)	376, 484
NgoMIV	GCCGGC	1 cut(s)	107
NlaIII	CATG	1 cut(s)	485
NsiI	ATGCAT	1 cut(s)	181
NspV	TTCGAA	2 cut(s)	95, 433
PagI	TCATGA	1 cut(s)	481
PctI	GAATGC	1 cut(s)	344
PdiI	GCCGGC	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	429
PinAI	ACCGGT	1 cut(s)	246
PkrI	GCNGC	1 cut(s)	504
Psp124BI	GAGCTC	1 cut(s)	515
PspPI	GGNCC	1 cut(s)	46
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
SacI	GAGCTC	1 cut(s)	515
SatI	GCNGC	1 cut(s)	503
Sau3AI	GATC	2 cut(s)	376, 484
Sau96I	GGNCC	1 cut(s)	46
SduI	GDGCHC	2 cut(s)	408, 515
SetI	ASST	8 cut(s)	30, 86, 105, 139, 232, 312, 424, 515
SfuI	TTCGAA	2 cut(s)	95, 433
SinI	GGWCC	1 cut(s)	46
Sse9I	AATT	3 cut(s)	239, 399, 429
SstI	GAGCTC	1 cut(s)	515
TaaI	ACNGT	1 cut(s)	374
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	4 cut(s)	95, 146, 316, 433
TasI	AATT	3 cut(s)	239, 399, 429
TatI	WGTACW	1 cut(s)	300
TscAI	CASTG	2 cut(s)	67, 379
TseI	GCWGC	1 cut(s)	502
TspDTI	ATGAA	5 cut(s)	69, 148, 372, 465, 470
TspRI	CASTG	2 cut(s)	67, 379
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	239
XmnI	GAANNNNTTC	1 cut(s)	429
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.