Rmu_sc0006271.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006271.1
N/A
Physical Location & Seq
Forward (+)
11157 .. 11995
839 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 381 bp
atgagtaacctaaacaaattaaactttgctccattaggaacaactggctctggatatcacaggtgggttcatgatgtccgccagcatctcaaggccgatggaatcctggatacgattctcgagcctagccaggacgtgataactgttgagcaagctcaagctttagaagcaaatagaaaagccttagaggcaaataaggagaaagccattgtcctaataactcgacggatcacaaggtttcatgagcttattggagctatgaatgttgctgaaaagcatgacaacatccttatgaagaactgtaatttgagatccatggaaaaagagcatattccggaatccaattatagtagcgcccctaggagagtgcgccaagagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

126

Amino Acids

14.38

Weight (kDa)

8.82

Isoelectric Point (pI)

57.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 334
AciI CCGC 1 cut(s) 79
AclWI GGATC 2 cut(s) 236, 306
AjiI CACGTC 1 cut(s) 136
AjnI CCWGG 2 cut(s) 105, 129
AluBI AGCT 4 cut(s) 155, 161, 247, 257
AluI AGCT 4 cut(s) 155, 161, 247, 257
AlwI GGATC 2 cut(s) 236, 306
Ama87I CYCGRG 1 cut(s) 119
Aor13HI TCCGGA 1 cut(s) 334
AoxI GGCC 1 cut(s) 93
AspA2I CCTAGG 1 cut(s) 359
AspLEI GCGC 2 cut(s) 356, 372
AvaI CYCGRG 1 cut(s) 119
AvrII CCTAGG 1 cut(s) 359
BccI CCATC 1 cut(s) 92
BciT130I CCWGG 2 cut(s) 107, 131
BciVI GTATCC 1 cut(s) 103
BfaI CTAG 2 cut(s) 126, 360
BfoI RGCGCY 1 cut(s) 357
BfuI GTATCC 1 cut(s) 103
BglI GCCNNNNNGGC 1 cut(s) 188
BlnI CCTAGG 1 cut(s) 359
Bme1390I CCNGG 2 cut(s) 107, 131
BmeT110I CYCGRG 1 cut(s) 119
BmgBI CACGTC 1 cut(s) 136
BmrFI CCNGG 2 cut(s) 107, 131
BmsI GCATC 1 cut(s) 94
BpuEI CTTGAG 2 cut(s) 74, 141
BsaJI CCNNGG 2 cut(s) 315, 359
BsaWI WCCGGW 1 cut(s) 334
Bse1I ACTGG 1 cut(s) 49
BseAI TCCGGA 1 cut(s) 334
BseBI CCWGG 2 cut(s) 107, 131
BseDI CCNNGG 2 cut(s) 315, 359
BseGI GGATG 1 cut(s) 285
BseNI ACTGG 1 cut(s) 49
BshFI GGCC 1 cut(s) 95
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 1 cut(s) 335
BsnI GGCC 1 cut(s) 95
BsoBI CYCGRG 1 cut(s) 119
Bsp13I TCCGGA 1 cut(s) 334
Bsp143I GATC 2 cut(s) 228, 311
Bsp19I CCATGG 1 cut(s) 315
BspACI CCGC 1 cut(s) 79
BspANI GGCC 1 cut(s) 95
BspEI TCCGGA 1 cut(s) 334
BspHI TCATGA 2 cut(s) 70, 241
BspPI GGATC 2 cut(s) 236, 306
BsrI ACTGG 1 cut(s) 49
BssECI CCNNGG 2 cut(s) 315, 359
BssMI GATC 2 cut(s) 228, 311
BssT1I CCWWGG 2 cut(s) 315, 359
Bst2UI CCWGG 2 cut(s) 107, 131
Bst4CI ACNGT 2 cut(s) 145, 302
BstC8I GCNNGC 2 cut(s) 83, 153
BstDEI CTNAG 1 cut(s) 184
BstDSI CCRYGG 1 cut(s) 315
BstF5I GGATG 1 cut(s) 285
BstH2I RGCGCY 1 cut(s) 357
BstHHI GCGC 2 cut(s) 356, 372
BstKTI GATC 2 cut(s) 231, 314
BstMBI GATC 2 cut(s) 228, 311
BstMWI GCNNNNNNNGC 2 cut(s) 167, 188
BstNI CCWGG 2 cut(s) 107, 131
BstSCI CCNGG 2 cut(s) 105, 129
BstX2I RGATCY 1 cut(s) 311
BstYI RGATCY 1 cut(s) 311
BsuI GTATCC 1 cut(s) 103
BsuRI GGCC 1 cut(s) 95
BtgI CCRYGG 1 cut(s) 315
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 1 cut(s) 285
Cac8I GCNNGC 2 cut(s) 83, 153
CciI TCATGA 2 cut(s) 70, 241
CfoI GCGC 2 cut(s) 356, 372
CviAII CATG 4 cut(s) 71, 242, 278, 316
DdeI CTNAG 1 cut(s) 184
DpnI GATC 2 cut(s) 230, 313
DpnII GATC 2 cut(s) 228, 311
EciI GGCGGA 1 cut(s) 68
Eco130I CCWWGG 2 cut(s) 315, 359
Eco32I GATATC 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 119
EcoRII CCWGG 2 cut(s) 105, 129
EcoRV GATATC 1 cut(s) 56
EcoT14I CCWWGG 2 cut(s) 315, 359
ErhI CCWWGG 2 cut(s) 315, 359
FaeI CATG 4 cut(s) 74, 245, 281, 319
FaiI YATR 8 cut(s) 72, 243, 260, 279, 293, 317, 330, 348
FatI CATG 4 cut(s) 70, 241, 277, 315
FokI GGATG 1 cut(s) 272
FspBI CTAG 2 cut(s) 126, 360
GlaI GCGC 2 cut(s) 355, 371
HaeII RGCGCY 1 cut(s) 357
HaeIII GGCC 1 cut(s) 95
HapII CCGG 1 cut(s) 335
HhaI GCGC 2 cut(s) 356, 372
Hin1II CATG 4 cut(s) 74, 245, 281, 319
Hin6I GCGC 2 cut(s) 354, 370
HinP1I GCGC 2 cut(s) 354, 370
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 3 cut(s) 102, 115, 338
HpaII CCGG 1 cut(s) 335
Hpy188III TCNNGA 5 cut(s) 51, 71, 119, 242, 335
Hpy99I CGWCG 1 cut(s) 228
HpyCH4III ACNGT 2 cut(s) 145, 302
HpyCH4IV ACGT 1 cut(s) 135
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 188
HpyF3I CTNAG 1 cut(s) 184
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 4 cut(s) 74, 245, 281, 319
HspAI GCGC 2 cut(s) 354, 370
Kpn2I TCCGGA 1 cut(s) 334
Kzo9I GATC 2 cut(s) 228, 311
LmnI GCTCC 2 cut(s) 34, 254
LpnPI CCDG 9 cut(s) 30, 36, 46, 92, 95, 116, 119, 143, 348
LweI GCATC 1 cut(s) 94
MaeI CTAG 2 cut(s) 126, 360
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 5
MalI GATC 2 cut(s) 230, 313
MboI GATC 2 cut(s) 228, 311
MboII GAAGA 1 cut(s) 307
MflI RGATCY 1 cut(s) 311
MluCI AATT 3 cut(s) 17, 304, 343
MnlI CCTC 1 cut(s) 181
MroI TCCGGA 1 cut(s) 334
MseI TTAA 1 cut(s) 20
MslI CAYNNNNRTG 1 cut(s) 290
MspI CCGG 1 cut(s) 335
MspR9I CCNGG 2 cut(s) 107, 131
MvaI CCWGG 2 cut(s) 107, 131
MwoI GCNNNNNNNGC 2 cut(s) 167, 188
NcoI CCATGG 1 cut(s) 315
NdeII GATC 2 cut(s) 228, 311
NlaIII CATG 4 cut(s) 74, 245, 281, 319
PaeR7I CTCGAG 1 cut(s) 119
PagI TCATGA 2 cut(s) 70, 241
PfeI GAWTC 3 cut(s) 102, 115, 338
PfoI TCCNGGA 1 cut(s) 105
Psp6I CCWGG 2 cut(s) 105, 129
PspGI CCWGG 2 cut(s) 105, 129
PsuI RGATCY 1 cut(s) 311
RseI CAYNNNNRTG 1 cut(s) 290
SaqAI TTAA 1 cut(s) 20
Sau3AI GATC 2 cut(s) 228, 311
ScrFI CCNGG 2 cut(s) 107, 131
SetI ASST 8 cut(s) 12, 65, 138, 157, 163, 239, 249, 259
SfaNI GCATC 1 cut(s) 94
Sfr274I CTCGAG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 119
SmiMI CAYNNNNRTG 1 cut(s) 290
SmlI CTYRAG 3 cut(s) 89, 119, 156
SmoI CTYRAG 3 cut(s) 89, 119, 156
Sse9I AATT 3 cut(s) 17, 304, 343
SsiI CCGC 1 cut(s) 79
SspMI CTAG 2 cut(s) 126, 360
StyD4I CCNGG 2 cut(s) 105, 129
StyI CCWWGG 2 cut(s) 315, 359
TaaI ACNGT 2 cut(s) 145, 302
TaiI ACGT 1 cut(s) 138
TaqI TCGA 2 cut(s) 120, 223
TasI AATT 3 cut(s) 17, 304, 343
TfiI GAWTC 3 cut(s) 102, 115, 338
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TspDTI ATGAA 4 cut(s) 59, 230, 275, 308
TspGWI ACGGA 1 cut(s) 241
XhoI CTCGAG 1 cut(s) 119
XmaJI CCTAGG 1 cut(s) 359
XspI CTAG 2 cut(s) 126, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.