Rmu_sc0006315.1_g000001

deSI-like protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006315.1
N/A
Physical Location & Seq
Forward (+)
9224 .. 12676
3453 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1095 bp
atgtacacatatcgcgaaagcatcgtccttggaacaacagattgttcaatcttcaaggtcaatcaaatcttgagggaactcagtagagagtggcctgggtttacttatgacttgttatcaaaaaattgcaatcacttttgtgatgagctatgcgaaagacttggcgtgccaaagcttccaggctgggttaatcgctttgcacatgctggtgatgctgcaatggaagtagcaggaaacacagcagtacggtttaaacaagccaagacagagattgtatcggctagcaaagttgcttatcgtttccttgttggcgtcactaacaatgtcatagcttctcccgaagctcctggaaattcaaatagaggggcccctagatttcaatcagcttggttcaaaaacctaatccctaatggagccaaatcgtctagtagttctgaatttgatagtgaagagaaggcacttcggcagcaacagcagacagattcagacttgccgctaccacgacattctcgaccattgcagcagacagattcagacttgccgctaccacaacattcccgaccattgcagcagacagattcagacttgccgctaccacaacattcccgaccattgcagcagacagattcagacttgccgctaccacaacattcccgaccattgcagcagacagattcagacttgccgctaccacaacattcccgaccattgcagcagacagattcagacttgccgctaccacaacattcccgaccattgcagcagacagattcagacttgccgctaccacaacattcccgaccattgcagcagacagattcagacttgccgctaccacaacattcccgaccattgcagcagacagattcagacttgccgctaccacaacattcccgaccattgcagcagacagattcagacttgccgctaccacaacattcccgaccattgcagcagacagattcagacttgccgctaccacaacattcccgaccattgcagcagacagatccatccaaaagaatactatcagctccccaacgaactgtcgtcagcaaatgtactccagccttcaaaattgcattctattcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

364

Amino Acids

40.89

Weight (kDa)

6.49

Isoelectric Point (pI)

75.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 2 - 75 2.7e-24 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 15
AclWI GGATC 1 cut(s) 1004
AcsI RAATTY 2 cut(s) 352, 437
AcyI GRCGYC 1 cut(s) 312
AfaI GTAC 3 cut(s) 5, 246, 1063
AgsI TTSAA 6 cut(s) 48, 55, 357, 380, 394, 1075
AjnI CCWGG 3 cut(s) 94, 178, 346
AleI CACNNNNGTG 1 cut(s) 138
AluBI AGCT 6 cut(s) 148, 175, 332, 344, 386, 1034
AluI AGCT 6 cut(s) 148, 175, 332, 344, 386, 1034
AlwI GGATC 1 cut(s) 1004
AoxI GGCC 2 cut(s) 92, 366
ApaI GGGCCC 1 cut(s) 370
ApoI RAATTY 2 cut(s) 352, 437
ArsI GACNNNNNNTTYG 2 cut(s) 9, 41
AspS9I GGNCC 2 cut(s) 366, 367
AsuHPI GGTGA 1 cut(s) 221
AsuNHI GCTAGC 1 cut(s) 281
BaeGI GKGCMC 1 cut(s) 370
BanII GRGCYC 1 cut(s) 370
BccI CCATC 1 cut(s) 1021
BciT130I CCWGG 3 cut(s) 96, 180, 348
BfaI CTAG 3 cut(s) 282, 372, 426
Bme1390I CCNGG 3 cut(s) 96, 180, 348
BmgT120I GGNCC 2 cut(s) 366, 367
BmiI GGNNCC 4 cut(s) 367, 368, 369, 415
BmrFI CCNGG 3 cut(s) 96, 180, 348
BmsI GCATC 2 cut(s) 30, 202
BmtI GCTAGC 1 cut(s) 285
BpmI CTGGAG 1 cut(s) 1050
BpuEI CTTGAG 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 379
BsaHI GRCGYC 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 28, 95
Bse8I GATNNNNATC 1 cut(s) 379
BseBI CCWGG 3 cut(s) 96, 180, 348
BseDI CCNNGG 2 cut(s) 28, 95
BseGI GGATG 1 cut(s) 1013
BseJI GATNNNNATC 1 cut(s) 379
BseMII CTCAG 1 cut(s) 94
BseSI GKGCMC 1 cut(s) 370
BseYI CCCAGC 1 cut(s) 183
Bsh1236I CGCG 1 cut(s) 15
BshFI GGCC 2 cut(s) 94, 368
BsmI GAATGC 1 cut(s) 1082
BsnI GGCC 2 cut(s) 94, 368
Bsp120I GGGCCC 1 cut(s) 366
Bsp1286I GDGCHC 1 cut(s) 370
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 1009
Bsp68I TCGCGA 1 cut(s) 15
BspANI GGCC 2 cut(s) 94, 368
BspCNI CTCAG 1 cut(s) 93
BspFNI CGCG 1 cut(s) 15
BspLI GGNNCC 4 cut(s) 367, 368, 369, 415
BspOI GCTAGC 1 cut(s) 285
BspPI GGATC 1 cut(s) 1004
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 2 cut(s) 28, 95
BssMI GATC 1 cut(s) 1009
BssNI GRCGYC 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 28
Bst2UI CCWGG 3 cut(s) 96, 180, 348
Bst4CI ACNGT 2 cut(s) 249, 1048
Bst6I CTCTTC 1 cut(s) 444
BstACI GRCGYC 1 cut(s) 312
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 167, 283
BstDEI CTNAG 1 cut(s) 80
BstF5I GGATG 1 cut(s) 1013
BstFNI CGCG 1 cut(s) 15
BstKTI GATC 1 cut(s) 1012
BstMBI GATC 1 cut(s) 1009
BstMWI GCNNNNNNNGC 2 cut(s) 212, 472
BstNI CCWGG 3 cut(s) 96, 180, 348
BstNSI RCATGY 1 cut(s) 206
BstSCI CCNGG 3 cut(s) 94, 178, 346
BstSLI GKGCMC 1 cut(s) 370
BstUI CGCG 1 cut(s) 15
BstX2I RGATCY 1 cut(s) 1009
BstYI RGATCY 1 cut(s) 1009
BsuRI GGCC 2 cut(s) 94, 368
BtsCI GGATG 1 cut(s) 1013
BtuMI TCGCGA 1 cut(s) 15
Cac8I GCNNGC 2 cut(s) 167, 283
Cfr13I GGNCC 2 cut(s) 366, 367
CseI GACGC 1 cut(s) 301
Csp6I GTAC 3 cut(s) 4, 245, 1062
CviAII CATG 1 cut(s) 203
CviQI GTAC 3 cut(s) 4, 245, 1062
DdeI CTNAG 1 cut(s) 80
DpnI GATC 1 cut(s) 1011
DpnII GATC 1 cut(s) 1009
DraI TTTAAA 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 444
Eco130I CCWWGG 1 cut(s) 28
Eco24I GRGCYC 1 cut(s) 370
EcoO109I RGGNCCY 2 cut(s) 366, 367
EcoRII CCWGG 3 cut(s) 94, 178, 346
EcoT14I CCWWGG 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 370
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 1 cut(s) 206
FaiI YATR 6 cut(s) 10, 108, 151, 204, 329, 1093
FatI CATG 1 cut(s) 202
FokI GGATG 1 cut(s) 1000
FriOI GRGCYC 1 cut(s) 370
FspBI CTAG 3 cut(s) 282, 372, 426
GsaI CCCAGC 1 cut(s) 187
GsuI CTGGAG 1 cut(s) 1050
HaeIII GGCC 2 cut(s) 94, 368
HgaI GACGC 1 cut(s) 301
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 1 cut(s) 206
HindIII AAGCTT 1 cut(s) 173
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 2 cut(s) 6, 102
Hpy8I GTNNAC 2 cut(s) 6, 102
HpyAV CCTTC 2 cut(s) 448, 1081
HpyCH4III ACNGT 2 cut(s) 249, 1048
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 472
HpyF3I CTNAG 1 cut(s) 80
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 1 cut(s) 206
Kzo9I GATC 1 cut(s) 1009
LmnI GCTCC 3 cut(s) 349, 413, 1039
LweI GCATC 2 cut(s) 30, 202
MaeI CTAG 3 cut(s) 282, 372, 426
MaeIII GTNAC 1 cut(s) 313
MalI GATC 1 cut(s) 1011
MboI GATC 1 cut(s) 1009
MboII GAAGA 2 cut(s) 43, 461
MflI RGATCY 1 cut(s) 1009
MhlI GDGCHC 1 cut(s) 370
MluCI AATT 4 cut(s) 124, 352, 437, 1077
MnlI CCTC 2 cut(s) 66, 356
MseI TTAA 2 cut(s) 189, 252
MslI CAYNNNNRTG 2 cut(s) 138, 207
MspR9I CCNGG 3 cut(s) 96, 180, 348
MssI GTTTAAAC 1 cut(s) 253
Mva1269I GAATGC 1 cut(s) 1082
MvaI CCWGG 3 cut(s) 96, 180, 348
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 2 cut(s) 212, 472
NdeII GATC 1 cut(s) 1009
NheI GCTAGC 1 cut(s) 281
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 4 cut(s) 367, 368, 369, 415
NmuCI GTSAC 1 cut(s) 313
NruI TCGCGA 1 cut(s) 15
NspI RCATGY 1 cut(s) 206
OliI CACNNNNGTG 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 508
PctI GAATGC 1 cut(s) 1082
PfoI TCCNGGA 1 cut(s) 346
PmeI GTTTAAAC 1 cut(s) 253
Psp6I CCWGG 3 cut(s) 94, 178, 346
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 3 cut(s) 94, 178, 346
PspN4I GGNNCC 4 cut(s) 367, 368, 369, 415
PspOMI GGGCCC 1 cut(s) 366
PspPI GGNCC 2 cut(s) 366, 367
PsuI RGATCY 1 cut(s) 1009
RruI TCGCGA 1 cut(s) 15
RsaI GTAC 3 cut(s) 5, 246, 1063
RsaNI GTAC 3 cut(s) 4, 245, 1062
RseI CAYNNNNRTG 2 cut(s) 138, 207
SaqAI TTAA 2 cut(s) 189, 252
Sau3AI GATC 1 cut(s) 1009
Sau96I GGNCC 2 cut(s) 366, 367
ScrFI CCNGG 3 cut(s) 96, 180, 348
SduI GDGCHC 1 cut(s) 370
SetI ASST 8 cut(s) 60, 150, 177, 334, 346, 388, 402, 1036
SfaNI GCATC 2 cut(s) 30, 202
SmiMI CAYNNNNRTG 2 cut(s) 138, 207
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
Sse9I AATT 4 cut(s) 124, 352, 437, 1077
SspMI CTAG 3 cut(s) 282, 372, 426
StyD4I CCNGG 3 cut(s) 94, 178, 346
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 2 cut(s) 249, 1048
TaqI TCGA 1 cut(s) 511
TasI AATT 4 cut(s) 124, 352, 437, 1077
TatI WGTACW 2 cut(s) 3, 1061
Tru1I TTAA 2 cut(s) 189, 252
Tru9I TTAA 2 cut(s) 189, 252
TseFI GTSAC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 1 cut(s) 1080
XapI RAATTY 2 cut(s) 352, 437
XceI RCATGY 1 cut(s) 206
XspI CTAG 3 cut(s) 282, 372, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.