Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006316.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2490 .. 6306

Gene Structure 3817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgaatgaattgctaaggcacggttccttctcttctattagccatacgtcttcaaagttggcgctactccagggaaggaatgaaagcgagagtttgtggacaaatgcaaatggtctattttctgcacaagctgcaccaaaacccccacgagcaatgtactcggtaactgaagggatgaaagtaggggggaagcgaactgtgattgttcctccagaggctggatatggtccaaagggcatgaatgagattcctaactggcagcgtgtaggtgacgataatgtctggaatccagaacgccagggcacagatggcaatgcagacgccacgcacccttgtaggaaagatcttggagcagaggatatttgggattggcccataggccgtgacaaagacacagaaaaagattatcacacaagtggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

140

Amino Acids

15.41

Weight (kDa)

5.78

Isoelectric Point (pI)

27.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	51 - 85	1.6e-06	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	278
AccB7I	CCANNNNNTGG	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	189
AcyI	GRCGYC	1 cut(s)	321
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgsI	TTSAA	1 cut(s)	54
AjnI	CCWGG	2 cut(s)	69, 297
AleI	CACNNNNGTG	1 cut(s)	414
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	2 cut(s)	371, 379
ApeKI	GCWGC	2 cut(s)	131, 259
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	2 cut(s)	227, 372
AsuHPI	GGTGA	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	227
BaeGI	GKGCMC	1 cut(s)	305
BauI	CACGAG	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	118, 271
BccI	CCATC	1 cut(s)	302
BceAI	ACGGC	1 cut(s)	366
BcgI	CGANNNNNNTGC	2 cut(s)	141, 175
BciT130I	CCWGG	2 cut(s)	71, 299
BfoI	RGCGCY	1 cut(s)	65
BglII	AGATCT	1 cut(s)	343
BisI	GCNGC	2 cut(s)	132, 260
BlsI	GCNGC	2 cut(s)	133, 261
Bme1390I	CCNGG	2 cut(s)	71, 299
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	2 cut(s)	227, 372
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	2 cut(s)	71, 299
BpiI	GAAGAC	1 cut(s)	42
BpmI	CTGGAG	2 cut(s)	53, 195
Bpu10I	CCTNAGC	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	70, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	260
Bse3DI	GCAATG	2 cut(s)	159, 319
BseBI	CCWGG	2 cut(s)	71, 299
BseDI	CCNNGG	2 cut(s)	70, 298
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMI	GCAATG	2 cut(s)	159, 319
BseNI	ACTGG	1 cut(s)	260
BseSI	GKGCMC	1 cut(s)	305
BseXI	GCAGC	2 cut(s)	118, 271
BsgI	GTGCAG	2 cut(s)	108, 117
BshFI	GGCC	2 cut(s)	373, 381
BslI	CCNNNNNNNGG	1 cut(s)	218
BsnI	GGCC	2 cut(s)	373, 381
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp143I	GATC	1 cut(s)	343
BspANI	GGCC	2 cut(s)	373, 381
BspLI	GGNNCC	1 cut(s)	25
BsrDI	GCAATG	2 cut(s)	159, 319
BsrI	ACTGG	1 cut(s)	260
BssECI	CCNNGG	2 cut(s)	70, 298
BssMI	GATC	1 cut(s)	343
BssNI	GRCGYC	1 cut(s)	321
BssSI	CACGAG	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	147
Bst2UI	CCWGG	2 cut(s)	71, 299
Bst4CI	ACNGT	2 cut(s)	23, 199
Bst6I	CTCTTC	1 cut(s)	37
BstACI	GRCGYC	1 cut(s)	321
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstDEI	CTNAG	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	180
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	1 cut(s)	346
BstMBI	GATC	1 cut(s)	343
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 309
BstNI	CCWGG	2 cut(s)	71, 299
BstSCI	CCNGG	2 cut(s)	69, 297
BstSLI	GKGCMC	1 cut(s)	305
BstV1I	GCAGC	2 cut(s)	118, 271
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	2 cut(s)	373, 381
BtsCI	GGATG	1 cut(s)	180
CaiI	CAGNNNCTG	1 cut(s)	218
CfoI	GCGC	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	227, 372
CseI	GACGC	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	1 cut(s)	238
CviJI	RGCY	5 cut(s)	42, 131, 218, 373, 381
CviKI_1	RGCY	5 cut(s)	42, 131, 218, 373, 381
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
DrdI	GACNNNNNNGTC	1 cut(s)	278
DseDI	GACNNNNNNGTC	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	189
EcoRII	CCWGG	2 cut(s)	69, 297
FaeI	CATG	1 cut(s)	241
FaiI	YATR	4 cut(s)	45, 225, 239, 377
FatI	CATG	1 cut(s)	237
Fnu4HI	GCNGC	2 cut(s)	132, 260
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	2 cut(s)	132, 260
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	2 cut(s)	132, 260
GsuI	CTGGAG	2 cut(s)	53, 195
HaeII	RGCGCY	1 cut(s)	65
HaeIII	GGCC	2 cut(s)	373, 381
HgaI	GACGC	1 cut(s)	329
HhaI	GCGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	1 cut(s)	241
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HinfI	GANTC	2 cut(s)	247, 286
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188III	TCNNGA	3 cut(s)	212, 283, 290
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	3 cut(s)	37, 69, 164
HpyCH4III	ACNGT	2 cut(s)	23, 199
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	4 cut(s)	107, 125, 134, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 309
HpyF3I	CTNAG	1 cut(s)	14
HpySE526I	ACGT	1 cut(s)	47
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	241
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	1 cut(s)	343
LmnI	GCTCC	1 cut(s)	350
LpnPI	CCDG	9 cut(s)	56, 83, 204, 225, 241, 268, 284, 303, 311
Lsp1109I	GCAGC	2 cut(s)	118, 271
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	3 cut(s)	163, 269, 383
MalI	GATC	1 cut(s)	345
MboI	GATC	1 cut(s)	343
MboII	GAAGA	2 cut(s)	24, 42
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	1 cut(s)	8
MnlI	CCTC	3 cut(s)	208, 219, 349
MslI	CAYNNNNRTG	1 cut(s)	414
MspR9I	CCNGG	2 cut(s)	71, 299
MvaI	CCWGG	2 cut(s)	71, 299
MwoI	GCNNNNNNNGC	2 cut(s)	131, 309
NdeII	GATC	1 cut(s)	343
NlaIII	CATG	1 cut(s)	241
NlaIV	GGNNCC	1 cut(s)	25
NmuCI	GTSAC	2 cut(s)	269, 383
OliI	CACNNNNGTG	1 cut(s)	414
PfeI	GAWTC	2 cut(s)	247, 286
PflMI	CCANNNNNTGG	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	133, 261
Psp6I	CCWGG	2 cut(s)	69, 297
PspGI	CCWGG	2 cut(s)	69, 297
PspN4I	GGNNCC	1 cut(s)	25
PspPI	GGNCC	2 cut(s)	227, 372
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	343
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	414
SatI	GCNGC	2 cut(s)	132, 260
Sau3AI	GATC	1 cut(s)	343
Sau96I	GGNCC	2 cut(s)	227, 372
ScrFI	CCNGG	2 cut(s)	71, 299
SduI	GDGCHC	1 cut(s)	305
SetI	ASST	3 cut(s)	50, 133, 271
SinI	GGWCC	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	414
Sse9I	AATT	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	69, 297
TaaI	ACNGT	2 cut(s)	23, 199
TaiI	ACGT	1 cut(s)	50
TasI	AATT	1 cut(s)	8
TatI	WGTACW	1 cut(s)	156
TfiI	GAWTC	2 cut(s)	247, 286
TseFI	GTSAC	2 cut(s)	269, 383
TseI	GCWGC	2 cut(s)	131, 259
Tsp45I	GTSAC	2 cut(s)	269, 383
TspDTI	ATGAA	5 cut(s)	17, 21, 96, 191, 254
Van91I	CCANNNNNTGG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.