Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006323.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

80119 .. 81282

Gene Structure 1164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atggtgcatggaagtgctttcaaagaaattcccaacaacaacaaggcacatcaagttcttcaatggaaatctattaaattggaggagaagaacttcgaagtggagaagaaacagttacttgctaataaagaggtattagctaggcttttagctgaaatggagaagataaaggctgataatgaagataagctacagaagatcagtgaggagagtgatctaatgaaagtaggtgaagaagagaggtcacaatgtcagccaatggcggaacgttattggggccagaggacactgacaagtacgtacatgcaacagaaagaactgcttctaaaggaagttggagatttgaatcaacaaaaggagctttttgagaaagagtgggaagagctggatgaaaaaagagctgcaattgagaaagagctgaagagtgtgagagaacagaaagctcaagaagaaaagctcaatcgaattgaagtagtgaggttgaaaaataaaagggtggcaacacaggattgtatacaacttctcgttccctgtcttgccatgctagctttcattgcaatttccaatcagaaagcatttgtttctgcaactccagataaaactcttctgcattgtaggcaagcctctcattcaatggagctatgcgaggcactaccactcattctccgggctgaaaacccatctttgatgcaacctagtgcttggggatcccagcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0000785 GO:0000789 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005652 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006996 GO:0006997 GO:0008150 GO:0009987 GO:0012505 GO:0016043 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032535 GO:0034399 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0090066 GO:0097298

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

27.68

Weight (kDa)

6.28

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	514
AciI	CCGC	1 cut(s)	263
AclI	AACGTT	1 cut(s)	268
AclWI	GGATC	2 cut(s)	702, 715
AcsI	RAATTY	1 cut(s)	27
AcuI	CTGAAG	1 cut(s)	440
AfaI	GTAC	2 cut(s)	298, 302
AgsI	TTSAA	6 cut(s)	22, 62, 346, 470, 484, 633
AlwI	GGATC	2 cut(s)	702, 715
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	1 cut(s)	27
Asp700I	GAANNNNTTC	2 cut(s)	92, 321
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	668
AsuHPI	GGTGA	1 cut(s)	242
AsuII	TTCGAA	1 cut(s)	96
AsuNHI	GCTAGC	1 cut(s)	544
BamHI	GGATCC	1 cut(s)	707
BarI	GAAGNNNNNNTAC	2 cut(s)	174, 206
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	1 cut(s)	688
BcnI	CCSGG	1 cut(s)	668
BfaI	CTAG	4 cut(s)	141, 545, 696, 718
BfmI	CTRYAG	1 cut(s)	191
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
Bme1390I	CCNGG	1 cut(s)	668
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	2 cut(s)	278, 709
BmrFI	CCNGG	1 cut(s)	668
BmsI	GCATC	1 cut(s)	678
BmtI	GCTAGC	1 cut(s)	548
BpmI	CTGGAG	1 cut(s)	576
Bpu14I	TTCGAA	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	429
BpuMI	CCSGG	1 cut(s)	668
BsaAI	YACGTR	1 cut(s)	300
BsaBI	GATNNNNATC	1 cut(s)	345
BsaXI	ACNNNNNCTCC	2 cut(s)	648, 678
Bse3DI	GCAATG	1 cut(s)	552
Bse8I	GATNNNNATC	1 cut(s)	345
BseGI	GGATG	1 cut(s)	394
BseJI	GATNNNNATC	1 cut(s)	345
BseMI	GCAATG	1 cut(s)	552
BseRI	GAGGAG	2 cut(s)	98, 221
BseXI	GCAGC	1 cut(s)	388
BseYI	CCCAGC	1 cut(s)	711
BshFI	GGCC	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	667
BsnI	GGCC	1 cut(s)	279
Bsp119I	TTCGAA	1 cut(s)	96
Bsp143I	GATC	3 cut(s)	198, 214, 707
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	1 cut(s)	279
BspLI	GGNNCC	2 cut(s)	278, 709
BspOI	GCTAGC	1 cut(s)	548
BspPI	GGATC	2 cut(s)	702, 715
BspQI	GCTCTTC	1 cut(s)	375
BspT104I	TTCGAA	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	552
BssMI	GATC	3 cut(s)	198, 214, 707
BssNAI	GTATAC	1 cut(s)	515
Bst1107I	GTATAC	1 cut(s)	515
Bst4CI	ACNGT	1 cut(s)	114
Bst6I	CTCTTC	4 cut(s)	231, 375, 416, 609
BstBAI	YACGTR	1 cut(s)	300
BstBI	TTCGAA	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	546, 621
BstF5I	GGATG	1 cut(s)	394
BstKTI	GATC	3 cut(s)	201, 217, 710
BstMBI	GATC	3 cut(s)	198, 214, 707
BstMWI	GCNNNNNNNGC	3 cut(s)	545, 554, 616
BstNSI	RCATGY	1 cut(s)	307
BstSCI	CCNGG	1 cut(s)	666
BstSFI	CTRYAG	1 cut(s)	191
BstSNI	TACGTA	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	388
BstX2I	RGATCY	1 cut(s)	707
BstYI	RGATCY	1 cut(s)	707
BstZ17I	GTATAC	1 cut(s)	515
BsuRI	GGCC	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	394
BtsIMutI	CAGTG	2 cut(s)	208, 287
Cac8I	GCNNGC	2 cut(s)	546, 621
Cfr13I	GGNCC	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	297, 301
CviAII	CATG	3 cut(s)	8, 304, 541
CviQI	GTAC	2 cut(s)	297, 301
DpnI	GATC	3 cut(s)	200, 216, 709
DpnII	GATC	3 cut(s)	198, 214, 707
Eam1104I	CTCTTC	4 cut(s)	231, 375, 416, 609
EarI	CTCTTC	4 cut(s)	231, 375, 416, 609
EciI	GGCGGA	1 cut(s)	278
Eco105I	TACGTA	1 cut(s)	300
Eco57I	CTGAAG	1 cut(s)	440
FaeI	CATG	3 cut(s)	11, 307, 544
FaiI	YATR	5 cut(s)	9, 305, 515, 542, 643
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FatI	CATG	3 cut(s)	7, 303, 540
FblI	GTMKAC	1 cut(s)	514
Fnu4HI	GCNGC	1 cut(s)	402
FokI	GGATG	1 cut(s)	401
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	4 cut(s)	141, 545, 696, 718
GluI	GCNGC	1 cut(s)	402
GsaI	CCCAGC	1 cut(s)	715
GsuI	CTGGAG	1 cut(s)	576
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	1 cut(s)	667
Hin1II	CATG	3 cut(s)	11, 307, 544
HinfI	GANTC	1 cut(s)	346
HpaII	CCGG	1 cut(s)	667
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	515
Hpy188I	TCNGA	1 cut(s)	570
Hpy188III	TCNNGA	2 cut(s)	446, 593
Hpy8I	GTNNAC	1 cut(s)	515
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4IV	ACGT	2 cut(s)	268, 299
HpyCH4V	TGCA	7 cut(s)	7, 307, 404, 557, 587, 610, 691
HpyF10VI	GCNNNNNNNGC	3 cut(s)	545, 554, 616
HpySE526I	ACGT	2 cut(s)	268, 299
Hsp92II	CATG	3 cut(s)	11, 307, 544
Kzo9I	GATC	3 cut(s)	198, 214, 707
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	2 cut(s)	358, 637
LpnPI	CCDG	6 cut(s)	293, 371, 491, 544, 606, 680
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	1 cut(s)	678
MaeI	CTAG	4 cut(s)	141, 545, 696, 718
MaeII	ACGT	2 cut(s)	268, 299
MaeIII	GTNAC	2 cut(s)	114, 243
MalI	GATC	3 cut(s)	200, 216, 709
MboI	GATC	3 cut(s)	198, 214, 707
MfeI	CAATTG	1 cut(s)	405
MflI	RGATCY	1 cut(s)	707
MluCI	AATT	5 cut(s)	27, 77, 405, 465, 558
MmeI	TCCRAC	1 cut(s)	316
MnlI	CCTC	8 cut(s)	76, 124, 199, 234, 276, 471, 634, 640
MroXI	GAANNNNTTC	2 cut(s)	92, 321
MseI	TTAA	1 cut(s)	75
MslI	CAYNNNNRTG	1 cut(s)	12
MspI	CCGG	1 cut(s)	667
MspR9I	CCNGG	1 cut(s)	668
MunI	CAATTG	1 cut(s)	405
MwoI	GCNNNNNNNGC	3 cut(s)	545, 554, 616
NciI	CCSGG	1 cut(s)	668
NdeII	GATC	3 cut(s)	198, 214, 707
NheI	GCTAGC	1 cut(s)	544
NlaIII	CATG	3 cut(s)	11, 307, 544
NlaIV	GGNNCC	2 cut(s)	278, 709
NmuCI	GTSAC	1 cut(s)	243
NspI	RCATGY	1 cut(s)	307
NspV	TTCGAA	1 cut(s)	96
PciSI	GCTCTTC	1 cut(s)	375
PdmI	GAANNNNTTC	2 cut(s)	92, 321
PfeI	GAWTC	1 cut(s)	346
PkrI	GCNGC	1 cut(s)	403
Ppu21I	YACGTR	1 cut(s)	300
Psp1406I	AACGTT	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	711
PspN4I	GGNNCC	2 cut(s)	278, 709
PspPI	GGNCC	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	707
RsaI	GTAC	2 cut(s)	298, 302
RsaNI	GTAC	2 cut(s)	297, 301
RseI	CAYNNNNRTG	1 cut(s)	12
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	3 cut(s)	198, 214, 707
Sau96I	GGNCC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	668
SfaNI	GCATC	1 cut(s)	678
SfcI	CTRYAG	1 cut(s)	191
SfuI	TTCGAA	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	444
SmoI	CTYRAG	1 cut(s)	444
SnaBI	TACGTA	1 cut(s)	300
Sse9I	AATT	5 cut(s)	27, 77, 405, 465, 558
SsiI	CCGC	1 cut(s)	263
SspMI	CTAG	4 cut(s)	141, 545, 696, 718
StyD4I	CCNGG	1 cut(s)	666
TaaI	ACNGT	1 cut(s)	114
TaiI	ACGT	2 cut(s)	271, 302
TaqI	TCGA	2 cut(s)	96, 463
TasI	AATT	5 cut(s)	27, 77, 405, 465, 558
TfiI	GAWTC	1 cut(s)	346
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	2 cut(s)	208, 294
TseFI	GTSAC	1 cut(s)	243
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	1 cut(s)	243
TspDTI	ATGAA	4 cut(s)	195, 236, 405, 541
TspRI	CASTG	2 cut(s)	208, 294
XapI	RAATTY	1 cut(s)	27
XceI	RCATGY	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	514
XmnI	GAANNNNTTC	2 cut(s)	92, 321
XspI	CTAG	4 cut(s)	141, 545, 696, 718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.