Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006339.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

70348 .. 74094

Gene Structure 3747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atgcaaagtgtggcagttggtattgcagcttccaaagctgcagttgagtcaaagaccaatgtgccttccacatttaatttggctgcaattgcagagttctattttggagtacgatctgataggaaacacaccaagcacgcaaaacccagagagaaggagagagcatatgtcgggtatggagaggctgcagagaatgttcgccggtgccggaggagctttgggccacccgccacccgactcccccaccctcgattcctccgagcaggtctacatctcctccttggcgctcctcaaaatgctcaagcacgaccagagatggtagttgggtggtaccattcgcatcctggatttggatgttggctatccggtgtggacattaatacccagcagagctttgaagctttgaatcaacgggctgtagctgtagtggtggatccaattcagagcaagccatcaattcaagccttgatccatgggttaaatcgtcattattactccatagcaattaattaccagaagaatgaactcgaggagaaaatgttgcttaaccttcacaagaagaaatggacagatgggctgacactaaagcgatttgacactcattcaaaaacaaatgagcaaacagttcaggagatgttaaatctagctgttaaatacaacaaggcagtgcaggaggaggatgagctgccaccagagaagcttgcaattgcaaatgtgggaagacaagatgttaagaaacacctcgaagagcatgtctccaacttaatgtcctcaaacattgtccagaccttgggcacaatacttgatactctggtgttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

273

Amino Acids

30.68

Weight (kDa)

9.41

Isoelectric Point (pI)

45.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	100 - 137	8.9e-12	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
RPN11_C	PF23594	192 - 270	9.6e-33	26S proteasome regulatory subunit RPN11 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	254
Acc65I	GGTACC	1 cut(s)	330
AccB1I	GGYRCC	2 cut(s)	204, 330
AccB7I	CCANNNNNTGG	1 cut(s)	790
AccI	GTMKAC	1 cut(s)	268
AciI	CCGC	1 cut(s)	228
AclWI	GGATC	3 cut(s)	428, 441, 463
AfaI	GTAC	2 cut(s)	111, 332
AfiI	CCNNNNNNNGG	2 cut(s)	350, 790
AgsI	TTSAA	4 cut(s)	398, 406, 461, 606
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	9 cut(s)	29, 38, 216, 393, 401, 422, 647, 685, 700
AluI	AGCT	9 cut(s)	29, 38, 216, 393, 401, 422, 647, 685, 700
Alw26I	GTCTC	1 cut(s)	760
AlwI	GGATC	3 cut(s)	428, 441, 463
Ama87I	CYCGRG	1 cut(s)	527
AoxI	GGCC	1 cut(s)	221
ApeKI	GCWGC	5 cut(s)	26, 38, 83, 185, 685
ArsI	GACNNNNNNTTYG	2 cut(s)	738, 770
AseI	ATTAAT	2 cut(s)	378, 507
Asp718I	GGTACC	1 cut(s)	330
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	527
BaeGI	GKGCMC	1 cut(s)	797
BaeI	ACNNNNGTAYC	1 cut(s)	798
BamHI	GGATCC	1 cut(s)	433
BanI	GGYRCC	2 cut(s)	204, 330
BarI	GAAGNNNNNNTAC	2 cut(s)	13, 45
BbsI	GAAGAC	1 cut(s)	727
BbvI	GCAGC	5 cut(s)	25, 38, 70, 172, 672
BccI	CCATC	3 cut(s)	310, 460, 566
BciT130I	CCWGG	1 cut(s)	345
BcoDI	GTCTC	1 cut(s)	760
BfaI	CTAG	2 cut(s)	644, 820
BfmI	CTRYAG	4 cut(s)	39, 186, 417, 423
BfoI	RGCGCY	1 cut(s)	288
BfuAI	ACCTGC	1 cut(s)	254
BisI	GCNGC	5 cut(s)	27, 39, 84, 186, 686
BlsI	GCNGC	5 cut(s)	28, 40, 85, 187, 687
Bme1390I	CCNGG	1 cut(s)	345
BmeT110I	CYCGRG	1 cut(s)	527
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	3 cut(s)	206, 332, 435
BmrFI	CCNGG	1 cut(s)	345
BmsI	GCATC	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	727
BplI	GAGNNNNNCTC	2 cut(s)	740, 772
BpuEI	CTTGAG	1 cut(s)	285
BsaJI	CCNNGG	3 cut(s)	280, 472, 789
BsaWI	WCCGGW	1 cut(s)	365
BsaXI	ACNNNNNCTCC	4 cut(s)	261, 291, 524, 554
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 790
Bse118I	RCCGGY	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	3 cut(s)	280, 472, 789
BseGI	GGATG	3 cut(s)	340, 359, 685
BseLI	CCNNNNNNNGG	2 cut(s)	350, 790
BseRI	GAGGAG	5 cut(s)	226, 266, 279, 545, 689
BseSI	GKGCMC	1 cut(s)	797
BseXI	GCAGC	5 cut(s)	25, 38, 70, 172, 672
BseYI	CCCAGC	1 cut(s)	384
BsgI	GTGCAG	1 cut(s)	689
BshFI	GGCC	1 cut(s)	223
BshNI	GGYRCC	2 cut(s)	204, 330
BsiHKCI	CYCGRG	1 cut(s)	527
BsiSI	CCGG	3 cut(s)	202, 208, 366
BslI	CCNNNNNNNGG	2 cut(s)	350, 790
BsmAI	GTCTC	1 cut(s)	760
BsnI	GGCC	1 cut(s)	223
BsoBI	CYCGRG	1 cut(s)	527
Bsp1286I	GDGCHC	1 cut(s)	797
Bsp143I	GATC	3 cut(s)	113, 433, 468
Bsp19I	CCATGG	1 cut(s)	472
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	1 cut(s)	223
BspLI	GGNNCC	3 cut(s)	206, 332, 435
BspMAI	CTGCAG	2 cut(s)	43, 190
BspMI	ACCTGC	1 cut(s)	254
BspPI	GGATC	3 cut(s)	428, 441, 463
BspQI	GCTCTTC	1 cut(s)	741
BspT107I	GGYRCC	2 cut(s)	204, 330
BsrFI	RCCGGY	1 cut(s)	201
BssAI	RCCGGY	1 cut(s)	201
BssECI	CCNNGG	3 cut(s)	280, 472, 789
BssMI	GATC	3 cut(s)	113, 433, 468
BssT1I	CCWWGG	3 cut(s)	280, 472, 789
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	1 cut(s)	625
Bst6I	CTCTTC	1 cut(s)	741
BstC8I	GCNNGC	3 cut(s)	138, 449, 702
BstDSI	CCRYGG	1 cut(s)	472
BstF5I	GGATG	3 cut(s)	340, 359, 685
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	3 cut(s)	116, 436, 471
BstMAI	GTCTC	1 cut(s)	760
BstMBI	GATC	3 cut(s)	113, 433, 468
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 89, 213
BstNI	CCWGG	1 cut(s)	345
BstNSI	RCATGY	1 cut(s)	755
BstSCI	CCNGG	1 cut(s)	343
BstSFI	CTRYAG	4 cut(s)	39, 186, 417, 423
BstSLI	GKGCMC	1 cut(s)	797
BstV1I	GCAGC	5 cut(s)	25, 38, 70, 172, 672
BstV2I	GAAGAC	1 cut(s)	727
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BsuRI	GGCC	1 cut(s)	223
BtgI	CCRYGG	1 cut(s)	472
BtsCI	GGATG	3 cut(s)	340, 359, 685
BtsI	GCAGTG	1 cut(s)	672
BtsIMutI	CAGTG	1 cut(s)	672
BveI	ACCTGC	1 cut(s)	254
Cac8I	GCNNGC	3 cut(s)	138, 449, 702
CfoI	GCGC	1 cut(s)	287
Cfr10I	RCCGGY	1 cut(s)	201
Cfr13I	GGNCC	1 cut(s)	221
Csp6I	GTAC	2 cut(s)	110, 331
CviAII	CATG	2 cut(s)	473, 752
CviQI	GTAC	2 cut(s)	110, 331
DpnI	GATC	3 cut(s)	115, 435, 470
DpnII	GATC	3 cut(s)	113, 433, 468
Eam1104I	CTCTTC	1 cut(s)	741
EarI	CTCTTC	1 cut(s)	741
Eco130I	CCWWGG	3 cut(s)	280, 472, 789
Eco88I	CYCGRG	1 cut(s)	527
EcoRII	CCWGG	1 cut(s)	343
EcoT14I	CCWWGG	3 cut(s)	280, 472, 789
ErhI	CCWWGG	3 cut(s)	280, 472, 789
FaeI	CATG	2 cut(s)	476, 755
FaiI	YATR	6 cut(s)	166, 168, 177, 474, 500, 753
FatI	CATG	2 cut(s)	472, 751
FauI	CCCGC	1 cut(s)	235
FauNDI	CATATG	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	268
Fnu4HI	GCNGC	5 cut(s)	27, 39, 84, 186, 686
FokI	GGATG	3 cut(s)	327, 366, 692
Fsp4HI	GCNGC	5 cut(s)	27, 39, 84, 186, 686
FspBI	CTAG	2 cut(s)	644, 820
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	5 cut(s)	27, 39, 84, 186, 686
GsaI	CCCAGC	1 cut(s)	388
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	3 cut(s)	202, 208, 366
HhaI	GCGC	1 cut(s)	287
Hin1II	CATG	2 cut(s)	476, 755
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HindIII	AAGCTT	2 cut(s)	399, 698
HinfI	GANTC	4 cut(s)	47, 237, 252, 406
HpaII	CCGG	3 cut(s)	202, 208, 366
Hpy166II	GTNNAC	2 cut(s)	269, 373
Hpy188I	TCNGA	3 cut(s)	118, 260, 444
Hpy188III	TCNNGA	2 cut(s)	629, 784
Hpy8I	GTNNAC	2 cut(s)	269, 373
HpyAV	CCTTC	3 cut(s)	75, 148, 560
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4V	TGCA	9 cut(s)	4, 26, 41, 86, 92, 188, 670, 704, 710
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 89, 213
Hsp92II	CATG	2 cut(s)	476, 755
HspAI	GCGC	1 cut(s)	285
KpnI	GGTACC	1 cut(s)	334
Kzo9I	GATC	3 cut(s)	113, 433, 468
LguI	GCTCTTC	1 cut(s)	741
LmnI	GCTCC	2 cut(s)	213, 292
Lsp1109I	GCAGC	5 cut(s)	25, 38, 70, 172, 672
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	2 cut(s)	644, 820
MalI	GATC	3 cut(s)	115, 435, 470
MboI	GATC	3 cut(s)	113, 433, 468
MboII	GAAGA	4 cut(s)	529, 571, 732, 758
MfeI	CAATTG	2 cut(s)	87, 705
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	1 cut(s)	797
MluCI	AATT	7 cut(s)	76, 87, 438, 456, 504, 508, 705
MlyI	GAGTC	2 cut(s)	56, 231
MmeI	TCCRAC	1 cut(s)	783
MseI	TTAA	9 cut(s)	75, 378, 479, 507, 546, 638, 651, 732, 764
MspI	CCGG	3 cut(s)	202, 208, 366
MspR9I	CCNGG	1 cut(s)	345
MunI	CAATTG	2 cut(s)	87, 705
MvaI	CCWGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	3 cut(s)	35, 89, 213
NcoI	CCATGG	1 cut(s)	472
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	3 cut(s)	113, 433, 468
NlaIII	CATG	2 cut(s)	476, 755
NlaIV	GGNNCC	3 cut(s)	206, 332, 435
NspI	RCATGY	1 cut(s)	755
PaeR7I	CTCGAG	1 cut(s)	527
PciSI	GCTCTTC	1 cut(s)	741
PcsI	WCGNNNNNNNCGW	1 cut(s)	256
PfeI	GAWTC	2 cut(s)	252, 406
PflMI	CCANNNNNTGG	1 cut(s)	790
PfoI	TCCNGGA	1 cut(s)	343
PkrI	GCNGC	5 cut(s)	28, 40, 85, 187, 687
PleI	GAGTC	2 cut(s)	55, 231
PpsI	GAGTC	2 cut(s)	55, 231
PshBI	ATTAAT	2 cut(s)	378, 507
Psp6I	CCWGG	1 cut(s)	343
PspFI	CCCAGC	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	3 cut(s)	206, 332, 435
PspPI	GGNCC	1 cut(s)	221
PspXI	VCTCGAGB	1 cut(s)	527
PstI	CTGCAG	2 cut(s)	43, 190
PsuI	RGATCY	1 cut(s)	433
RsaI	GTAC	2 cut(s)	111, 332
RsaNI	GTAC	2 cut(s)	110, 331
SapI	GCTCTTC	1 cut(s)	741
SaqAI	TTAA	9 cut(s)	75, 378, 479, 507, 546, 638, 651, 732, 764
SatI	GCNGC	5 cut(s)	27, 39, 84, 186, 686
Sau3AI	GATC	3 cut(s)	113, 433, 468
Sau96I	GGNCC	1 cut(s)	221
SchI	GAGTC	2 cut(s)	56, 231
ScrFI	CCNGG	1 cut(s)	345
SduI	GDGCHC	1 cut(s)	797
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	4 cut(s)	39, 186, 417, 423
Sfr274I	CTCGAG	1 cut(s)	527
SgrAI	CRCCGGYG	1 cut(s)	201
SlaI	CTCGAG	1 cut(s)	527
SmlI	CTYRAG	2 cut(s)	300, 527
SmoI	CTYRAG	2 cut(s)	300, 527
Sse9I	AATT	7 cut(s)	76, 87, 438, 456, 504, 508, 705
SsiI	CCGC	1 cut(s)	228
SspMI	CTAG	2 cut(s)	644, 820
StyD4I	CCNGG	1 cut(s)	343
StyI	CCWWGG	3 cut(s)	280, 472, 789
TaaI	ACNGT	1 cut(s)	625
TaqI	TCGA	3 cut(s)	250, 528, 744
TasI	AATT	7 cut(s)	76, 87, 438, 456, 504, 508, 705
TfiI	GAWTC	2 cut(s)	252, 406
Tru1I	TTAA	9 cut(s)	75, 378, 479, 507, 546, 638, 651, 732, 764
Tru9I	TTAA	9 cut(s)	75, 378, 479, 507, 546, 638, 651, 732, 764
TscAI	CASTG	1 cut(s)	672
TseI	GCWGC	5 cut(s)	26, 38, 83, 185, 685
TspDTI	ATGAA	1 cut(s)	537
TspRI	CASTG	1 cut(s)	672
Van91I	CCANNNNNTGG	1 cut(s)	790
VspI	ATTAAT	2 cut(s)	378, 507
XceI	RCATGY	1 cut(s)	755
XcmI	CCANNNNNNNNNTGG	2 cut(s)	76, 341
XhoI	CTCGAG	1 cut(s)	527
XmiI	GTMKAC	1 cut(s)	268
XspI	CTAG	2 cut(s)	644, 820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.