Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006349.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

20605 .. 22495

Gene Structure 1891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgagaatttaccacagttcggtcactagcaactggattcctgtcaccggccaccagattcctgccaacgatcgccggattcccgtcactggccgcggaaatctagtcaccggcatccgccgaccagacttatctgaaaacttcactggaggtccccaaacaggtagttggagatcttatagggtttctattctccacatcccaatctctccgcttcgagctccaatcgggccataccaaatgcatcgtcgaagacatgaaggccaatgccatgacccgtcgttaaccccgacgaaggccagcccttgccgccctcacacaagttcaccgttcggctatgggaatagccatcactactcagagcttgtggaatcgggtcaatttacttttcaagcggtagaggccggagactatatggcatgtttctgggcgcccgatcacaagccccggacgacgttgaccattgagtttgattggaagaccgatgtggcagccaagggaatgaacgccgtgctggaaatttgctcagctctggaagagtataggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

182

Amino Acids

20.47

Weight (kDa)

8.75

Isoelectric Point (pI)

59.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	109 - 168	1.2e-08	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	430
AccII	CGCG	1 cut(s)	96
AciI	CCGC	6 cut(s)	94, 96, 118, 212, 310, 395
AcoI	YGGCCR	2 cut(s)	49, 91
AcsI	RAATTY	2 cut(s)	6, 519
AcyI	GRCGYC	1 cut(s)	431
AfiI	CCNNNNNNNGG	5 cut(s)	19, 47, 89, 161, 295
AgsI	TTSAA	1 cut(s)	392
AluBI	AGCT	3 cut(s)	221, 364, 530
AluI	AGCT	3 cut(s)	221, 364, 530
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	1 cut(s)	402
AoxI	GGCC	6 cut(s)	49, 91, 230, 262, 297, 402
ApeKI	GCWGC	1 cut(s)	491
ApoI	RAATTY	2 cut(s)	6, 519
ArsI	GACNNNNNNTTYG	2 cut(s)	232, 264
AspLEI	GCGC	1 cut(s)	433
AspS9I	GGNCC	2 cut(s)	152, 230
AsuC2I	CCSGG	1 cut(s)	448
AsuHPI	GGTGA	3 cut(s)	37, 100, 318
AvaII	GGWCC	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	430
BanII	GRGCYC	1 cut(s)	223
BbsI	GAAGAC	2 cut(s)	259, 485
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	503
BccI	CCATC	1 cut(s)	357
BceAI	ACGGC	1 cut(s)	494
BcnI	CCSGG	1 cut(s)	448
BcoDI	GTCTC	1 cut(s)	402
BfaI	CTAG	2 cut(s)	27, 104
BfoI	RGCGCY	1 cut(s)	434
BglII	AGATCT	1 cut(s)	173
BisI	GCNGC	3 cut(s)	94, 310, 492
BlpI	GCTNAGC	1 cut(s)	526
BlsI	GCNGC	3 cut(s)	95, 311, 493
Bme1390I	CCNGG	1 cut(s)	448
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	2 cut(s)	152, 230
BmiI	GGNNCC	2 cut(s)	154, 432
BmrFI	CCNGG	1 cut(s)	448
BmsI	GCATC	2 cut(s)	123, 253
BpiI	GAAGAC	2 cut(s)	259, 485
BpmI	CTGGAG	1 cut(s)	168
Bpu1102I	GCTNAGC	1 cut(s)	526
BpuMI	CCSGG	1 cut(s)	448
BsaHI	GRCGYC	1 cut(s)	431
BsaJI	CCNNGG	3 cut(s)	94, 446, 495
Bsc4I	CCNNNNNNNGG	5 cut(s)	19, 47, 89, 161, 295
Bse118I	RCCGGY	2 cut(s)	47, 110
Bse1I	ACTGG	3 cut(s)	38, 94, 151
BseDI	CCNNGG	3 cut(s)	94, 446, 495
BseGI	GGATG	2 cut(s)	114, 198
BseLI	CCNNNNNNNGG	5 cut(s)	19, 47, 89, 161, 295
BseMII	CTCAG	2 cut(s)	372, 540
BseNI	ACTGG	3 cut(s)	38, 94, 151
BseXI	GCAGC	1 cut(s)	503
Bsh1236I	CGCG	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	73
BshFI	GGCC	6 cut(s)	51, 93, 232, 264, 299, 404
BshNI	GGYRCC	1 cut(s)	430
BsiEI	CGRYCG	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	5 cut(s)	48, 76, 111, 405, 448
BslFI	GGGAC	1 cut(s)	138
BslI	CCNNNNNNNGG	5 cut(s)	19, 47, 89, 161, 295
BsmAI	GTCTC	1 cut(s)	402
BsmFI	GGGAC	1 cut(s)	138
BsnI	GGCC	6 cut(s)	51, 93, 232, 264, 299, 404
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	3 cut(s)	70, 173, 436
Bsp1720I	GCTNAGC	1 cut(s)	526
BspACI	CCGC	6 cut(s)	94, 96, 118, 212, 310, 395
BspANI	GGCC	6 cut(s)	51, 93, 232, 264, 299, 404
BspCNI	CTCAG	2 cut(s)	371, 539
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	2 cut(s)	154, 432
BspT107I	GGYRCC	1 cut(s)	430
BsrFI	RCCGGY	2 cut(s)	47, 110
BsrI	ACTGG	3 cut(s)	38, 94, 151
BssAI	RCCGGY	2 cut(s)	47, 110
BssECI	CCNNGG	3 cut(s)	94, 446, 495
BssMI	GATC	3 cut(s)	70, 173, 436
BssNI	GRCGYC	1 cut(s)	431
BssT1I	CCWWGG	1 cut(s)	495
Bst4CI	ACNGT	2 cut(s)	17, 330
Bst6I	CTCTTC	1 cut(s)	531
BstACI	GRCGYC	1 cut(s)	431
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	2 cut(s)	358, 526
BstDSI	CCRYGG	1 cut(s)	94
BstF5I	GGATG	2 cut(s)	114, 198
BstFNI	CGCG	1 cut(s)	96
BstH2I	RGCGCY	1 cut(s)	434
BstHHI	GCGC	1 cut(s)	433
BstKTI	GATC	3 cut(s)	73, 176, 439
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	3 cut(s)	70, 173, 436
BstMCI	CGRYCG	1 cut(s)	73
BstMWI	GCNNNNNNNGC	2 cut(s)	309, 401
BstNSI	RCATGY	1 cut(s)	423
BstSCI	CCNGG	1 cut(s)	446
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	503
BstV2I	GAAGAC	2 cut(s)	259, 485
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
BsuRI	GGCC	6 cut(s)	51, 93, 232, 264, 299, 404
BtgI	CCRYGG	1 cut(s)	94
BtsCI	GGATG	2 cut(s)	114, 198
BtsIMutI	CAGTG	2 cut(s)	87, 144
Cac8I	GCNNGC	1 cut(s)	301
CfoI	GCGC	1 cut(s)	433
Cfr10I	RCCGGY	2 cut(s)	47, 110
Cfr13I	GGNCC	2 cut(s)	152, 230
Cfr42I	CCGCGG	1 cut(s)	97
CviAII	CATG	3 cut(s)	257, 272, 420
DdeI	CTNAG	2 cut(s)	358, 526
DinI	GGCGCC	1 cut(s)	432
DpnI	GATC	3 cut(s)	72, 175, 438
DpnII	GATC	3 cut(s)	70, 173, 436
EaeI	YGGCCR	2 cut(s)	49, 91
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
EciI	GGCGGA	1 cut(s)	107
Ecl136II	GAGCTC	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	152
Eco53kI	GAGCTC	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	221
EcoO109I	RGGNCCY	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	495
EcoT22I	ATGCAT	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	223
EgeI	GGCGCC	1 cut(s)	432
EheI	GGCGCC	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	3 cut(s)	260, 275, 423
FaiI	YATR	9 cut(s)	180, 235, 258, 273, 339, 414, 416, 421, 543
FaqI	GGGAC	1 cut(s)	138
FatI	CATG	3 cut(s)	256, 271, 419
Fnu4HI	GCNGC	3 cut(s)	94, 310, 492
FokI	GGATG	2 cut(s)	101, 185
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	3 cut(s)	94, 310, 492
FspBI	CTAG	2 cut(s)	27, 104
GlaI	GCGC	1 cut(s)	432
GluI	GCNGC	3 cut(s)	94, 310, 492
GsuI	CTGGAG	1 cut(s)	168
HaeII	RGCGCY	1 cut(s)	434
HaeIII	GGCC	6 cut(s)	51, 93, 232, 264, 299, 404
HapII	CCGG	5 cut(s)	48, 76, 111, 405, 448
HhaI	GCGC	1 cut(s)	433
Hin1I	GRCGYC	1 cut(s)	431
Hin1II	CATG	3 cut(s)	260, 275, 423
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HincII	GTYRAC	2 cut(s)	285, 459
HindII	GTYRAC	2 cut(s)	285, 459
HinfI	GANTC	4 cut(s)	37, 58, 79, 371
HpaI	GTTAAC	1 cut(s)	285
HpaII	CCGG	5 cut(s)	48, 76, 111, 405, 448
HphI	GGTGA	3 cut(s)	37, 100, 318
Hpy166II	GTNNAC	3 cut(s)	285, 326, 459
Hpy188I	TCNGA	2 cut(s)	136, 361
Hpy188III	TCNNGA	1 cut(s)	533
Hpy8I	GTNNAC	3 cut(s)	285, 326, 459
Hpy99I	CGWCG	4 cut(s)	252, 283, 295, 457
HpyAV	CCTTC	2 cut(s)	254, 289
HpyCH4III	ACNGT	2 cut(s)	17, 330
HpyCH4IV	ACGT	1 cut(s)	455
HpyCH4V	TGCA	1 cut(s)	244
HpyF10VI	GCNNNNNNNGC	2 cut(s)	309, 401
HpyF3I	CTNAG	2 cut(s)	358, 526
HpySE526I	ACGT	1 cut(s)	455
Hsp92I	GRCGYC	1 cut(s)	431
Hsp92II	CATG	3 cut(s)	260, 275, 423
HspAI	GCGC	1 cut(s)	431
KasI	GGCGCC	1 cut(s)	430
KspAI	GTTAAC	1 cut(s)	285
KspI	CCGCGG	1 cut(s)	97
Kzo9I	GATC	3 cut(s)	70, 173, 436
LmnI	GCTCC	1 cut(s)	226
Lsp1109I	GCAGC	1 cut(s)	503
LweI	GCATC	2 cut(s)	123, 253
MaeI	CTAG	2 cut(s)	27, 104
MaeII	ACGT	1 cut(s)	455
MaeIII	GTNAC	4 cut(s)	22, 43, 85, 106
MalI	GATC	3 cut(s)	72, 175, 438
MboI	GATC	3 cut(s)	70, 173, 436
MboII	GAAGA	3 cut(s)	264, 490, 548
MflI	RGATCY	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	3 cut(s)	6, 380, 519
Mly113I	GGCGCC	1 cut(s)	431
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	3 cut(s)	143, 324, 394
Mph1103I	ATGCAT	1 cut(s)	246
MseI	TTAA	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	5 cut(s)	48, 76, 111, 405, 448
MspR9I	CCNGG	1 cut(s)	448
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	309, 401
NarI	GGCGCC	1 cut(s)	431
NciI	CCSGG	1 cut(s)	448
NdeII	GATC	3 cut(s)	70, 173, 436
NlaIII	CATG	3 cut(s)	260, 275, 423
NlaIV	GGNNCC	2 cut(s)	154, 432
NmuCI	GTSAC	4 cut(s)	22, 43, 85, 106
NsiI	ATGCAT	1 cut(s)	246
NspI	RCATGY	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	1 cut(s)	287
PfeI	GAWTC	4 cut(s)	37, 58, 79, 371
PkrI	GCNGC	3 cut(s)	95, 311, 493
Ple19I	CGATCG	1 cut(s)	73
PluTI	GGCGCC	1 cut(s)	434
PpuMI	RGGWCCY	1 cut(s)	152
Psp124BI	GAGCTC	1 cut(s)	223
Psp5II	RGGWCCY	1 cut(s)	152
PspN4I	GGNNCC	2 cut(s)	154, 432
PspPI	GGNCC	2 cut(s)	152, 230
PspPPI	RGGWCCY	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	173
PvuI	CGATCG	1 cut(s)	73
SacI	GAGCTC	1 cut(s)	223
SacII	CCGCGG	1 cut(s)	97
SaqAI	TTAA	1 cut(s)	284
SatI	GCNGC	3 cut(s)	94, 310, 492
Sau3AI	GATC	3 cut(s)	70, 173, 436
Sau96I	GGNCC	2 cut(s)	152, 230
ScrFI	CCNGG	1 cut(s)	448
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	7 cut(s)	154, 166, 223, 366, 458, 532, 548
SfaNI	GCATC	2 cut(s)	123, 253
SfoI	GGCGCC	1 cut(s)	432
Sfr303I	CCGCGG	1 cut(s)	97
SgrBI	CCGCGG	1 cut(s)	97
SinI	GGWCC	1 cut(s)	152
Sse9I	AATT	3 cut(s)	6, 380, 519
SsiI	CCGC	6 cut(s)	94, 96, 118, 212, 310, 395
SspDI	GGCGCC	1 cut(s)	430
SspMI	CTAG	2 cut(s)	27, 104
SstI	GAGCTC	1 cut(s)	223
StyD4I	CCNGG	1 cut(s)	446
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	2 cut(s)	17, 330
TaiI	ACGT	1 cut(s)	458
TaqI	TCGA	2 cut(s)	217, 250
TaqII	GACCGA	2 cut(s)	10, 497
TasI	AATT	3 cut(s)	6, 380, 519
TauI	GCSGC	2 cut(s)	96, 312
TfiI	GAWTC	4 cut(s)	37, 58, 79, 371
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
TscAI	CASTG	2 cut(s)	94, 151
TseFI	GTSAC	4 cut(s)	22, 43, 85, 106
TseI	GCWGC	1 cut(s)	491
Tsp45I	GTSAC	4 cut(s)	22, 43, 85, 106
TspDTI	ATGAA	2 cut(s)	273, 518
TspRI	CASTG	2 cut(s)	94, 151
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	2 cut(s)	6, 519
XceI	RCATGY	1 cut(s)	423
XspI	CTAG	2 cut(s)	27, 104
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.