Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006361.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 789

Gene Structure 788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 608 bp

atgggatccctgaagagaaaatcggaggaagatgactctgcagcagctccacccaaagtagccaagtcggagaacaagaacactcttgaaatcgtcaacaatgaacagatggtctgcgtgcacgacgtgtcgtaccctgagggttacgttcctccgccgccgccgccttcttcttccgaacccgccaagaaattccccttcactctcgacccttttcagtccgaagccatcaaatgcattgaaaatggggagtccgtcatggtgtctgctcacacatctgctggaaaaactgttgttgcgtcgtacgcgattgcgttgtgcttgcgtaataagcaacgtgtgatatacactgcacccatcaaagctctcagcaaccaaaagtacagagagttcaaagaggagttttcggatgttgggttgatgactggagatgtaacaatcgaccccaacgcttcgtgcttggtgatgaccacggaaatctggcgaagcatgcagtacaaaggatcagaggtgacgcgagaggtggcgtggataatctttgatgaggtgcattacatgagggatcttgagagaggtgtggtgtgggaagagagcattgttatggctcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000460 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

203

Amino Acids

22.65

Weight (kDa)

5.11

Isoelectric Point (pI)

56.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	68 - 188	3.8e-09	Type III restriction enzyme, res subunit
DEAD	PF00270	71 - 199	1.1e-22	DEAD/DEAH box helicase
DEXQc_Suv3	PF22527	91 - 200	2.1e-08	DEXQ-box helicase domain of Suv3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	308, 517
AciI	CCGC	5 cut(s)	155, 158, 161, 164, 183
AclWI	GGATC	3 cut(s)	13, 511, 570
AcsI	RAATTY	1 cut(s)	191
AcuI	CTGAAG	1 cut(s)	32
AdeI	CACNNNGTG	1 cut(s)	127
AfaI	GTAC	4 cut(s)	134, 305, 383, 497
AflIII	ACRYGT	2 cut(s)	126, 337
AgsI	TTSAA	3 cut(s)	89, 242, 394
AjiI	CACGTC	1 cut(s)	127
AluBI	AGCT	2 cut(s)	47, 365
AluI	AGCT	2 cut(s)	47, 365
Alw21I	GWGCWC	1 cut(s)	123
Alw44I	GTGCAC	1 cut(s)	119
AlwI	GGATC	3 cut(s)	13, 511, 570
ApaLI	GTGCAC	1 cut(s)	119
ApeKI	GCWGC	2 cut(s)	41, 44
ApoI	RAATTY	1 cut(s)	191
AsuHPI	GGTGA	2 cut(s)	475, 523
AxyI	CCTNAGG	1 cut(s)	138
BaeGI	GKGCMC	1 cut(s)	123
BamHI	GGATCC	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	53, 56
BccI	CCATC	3 cut(s)	103, 236, 365
BfmI	CTRYAG	1 cut(s)	39
BisI	GCNGC	5 cut(s)	42, 45, 158, 161, 164
BlsI	GCNGC	5 cut(s)	43, 46, 159, 162, 165
BmgBI	CACGTC	1 cut(s)	127
BmiI	GGNNCC	2 cut(s)	7, 606
BpmI	CTGGAG	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	587
BsaJI	CCNNGG	1 cut(s)	471
Bse1I	ACTGG	1 cut(s)	430
Bse21I	CCTNAGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	1 cut(s)	415
BseMII	CTCAG	2 cut(s)	129, 382
BseNI	ACTGG	1 cut(s)	430
BseRI	GAGGAG	1 cut(s)	413
BseSI	GKGCMC	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	53, 56
BsgI	GTGCAG	1 cut(s)	336
Bsh1236I	CGCG	2 cut(s)	308, 517
BsiHKAI	GWGCWC	1 cut(s)	123
BsiWI	CGTACG	1 cut(s)	303
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	3 cut(s)	5, 503, 562
BspACI	CCGC	5 cut(s)	155, 158, 161, 164, 183
BspCNI	CTCAG	2 cut(s)	130, 381
BspFNI	CGCG	2 cut(s)	308, 517
BspLI	GGNNCC	2 cut(s)	7, 606
BspMAI	CTGCAG	1 cut(s)	43
BspPI	GGATC	3 cut(s)	13, 511, 570
BsrI	ACTGG	1 cut(s)	430
BssECI	CCNNGG	1 cut(s)	471
BssMI	GATC	3 cut(s)	5, 503, 562
Bst4CI	ACNGT	1 cut(s)	292
Bst6I	CTCTTC	2 cut(s)	8, 582
BstC8I	GCNNGC	3 cut(s)	119, 323, 491
BstDEI	CTNAG	2 cut(s)	138, 368
BstDSI	CCRYGG	1 cut(s)	471
BstF5I	GGATG	1 cut(s)	415
BstFNI	CGCG	2 cut(s)	308, 517
BstKTI	GATC	3 cut(s)	8, 506, 565
BstMBI	GATC	3 cut(s)	5, 503, 562
BstMWI	GCNNNNNNNGC	4 cut(s)	163, 305, 331, 490
BstNSI	RCATGY	1 cut(s)	493
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	123
BstUI	CGCG	2 cut(s)	308, 517
BstV1I	GCAGC	2 cut(s)	53, 56
BstX2I	RGATCY	2 cut(s)	5, 562
BstYI	RGATCY	2 cut(s)	5, 562
Bsu36I	CCTNAGG	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	471
BtrI	CACGTC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	415
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	3 cut(s)	119, 323, 491
CseI	GACGC	2 cut(s)	288, 523
Csp6I	GTAC	4 cut(s)	133, 304, 382, 496
CviAII	CATG	3 cut(s)	259, 490, 556
CviJI	RGCY	5 cut(s)	47, 62, 227, 365, 605
CviKI_1	RGCY	5 cut(s)	47, 62, 227, 365, 605
CviQI	GTAC	4 cut(s)	133, 304, 382, 496
DdeI	CTNAG	2 cut(s)	138, 368
DpnI	GATC	3 cut(s)	7, 505, 564
DpnII	GATC	3 cut(s)	5, 503, 562
DraIII	CACNNNGTG	1 cut(s)	127
Eam1104I	CTCTTC	2 cut(s)	8, 582
EarI	CTCTTC	2 cut(s)	8, 582
EciI	GGCGGA	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	32
Eco81I	CCTNAGG	1 cut(s)	138
EcoT22I	ATGCAT	1 cut(s)	239
FaeI	CATG	3 cut(s)	262, 493, 559
FaiI	YATR	5 cut(s)	260, 346, 491, 557, 602
FatI	CATG	3 cut(s)	258, 489, 555
FauI	CCCGC	1 cut(s)	190
Fnu4HI	GCNGC	5 cut(s)	42, 45, 158, 161, 164
FokI	GGATG	1 cut(s)	422
Fsp4HI	GCNGC	5 cut(s)	42, 45, 158, 161, 164
GluI	GCNGC	5 cut(s)	42, 45, 158, 161, 164
GsuI	CTGGAG	1 cut(s)	447
HgaI	GACGC	2 cut(s)	288, 523
Hin1II	CATG	3 cut(s)	262, 493, 559
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	2 cut(s)	35, 251
HphI	GGTGA	2 cut(s)	475, 523
Hpy166II	GTNNAC	2 cut(s)	97, 121
Hpy188I	TCNGA	6 cut(s)	25, 70, 178, 223, 409, 508
Hpy188III	TCNNGA	3 cut(s)	86, 206, 566
Hpy8I	GTNNAC	2 cut(s)	97, 121
Hpy99I	CGWCG	2 cut(s)	128, 304
HpyAV	CCTTC	2 cut(s)	177, 208
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4IV	ACGT	3 cut(s)	126, 147, 337
HpyCH4V	TGCA	6 cut(s)	41, 121, 237, 353, 493, 550
HpyF10VI	GCNNNNNNNGC	4 cut(s)	163, 305, 331, 490
HpyF3I	CTNAG	2 cut(s)	138, 368
HpySE526I	ACGT	3 cut(s)	126, 147, 337
Hsp92II	CATG	3 cut(s)	262, 493, 559
Kzo9I	GATC	3 cut(s)	5, 503, 562
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	5 cut(s)	23, 150, 267, 411, 466
Lsp1109I	GCAGC	2 cut(s)	53, 56
MaeII	ACGT	3 cut(s)	126, 147, 337
MaeIII	GTNAC	3 cut(s)	143, 433, 511
MalI	GATC	3 cut(s)	7, 505, 564
MboI	GATC	3 cut(s)	5, 503, 562
MboII	GAAGA	5 cut(s)	25, 41, 162, 165, 599
MflI	RGATCY	2 cut(s)	5, 562
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	1 cut(s)	191
MlyI	GAGTC	2 cut(s)	29, 260
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	9 cut(s)	19, 133, 162, 391, 502, 514, 538, 552, 566
Mph1103I	ATGCAT	1 cut(s)	239
MslI	CAYNNNNRTG	1 cut(s)	599
MvnI	CGCG	2 cut(s)	308, 517
MwoI	GCNNNNNNNGC	4 cut(s)	163, 305, 331, 490
NdeII	GATC	3 cut(s)	5, 503, 562
NlaIII	CATG	3 cut(s)	262, 493, 559
NlaIV	GGNNCC	2 cut(s)	7, 606
NmuCI	GTSAC	1 cut(s)	511
NsiI	ATGCAT	1 cut(s)	239
NspI	RCATGY	1 cut(s)	493
PaeI	GCATGC	1 cut(s)	493
Pfl23II	CGTACG	1 cut(s)	303
PkrI	GCNGC	5 cut(s)	43, 46, 159, 162, 165
PleI	GAGTC	2 cut(s)	29, 259
PpsI	GAGTC	2 cut(s)	29, 259
PspLI	CGTACG	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	7, 606
PsrI	GAACNNNNNNTAC	2 cut(s)	374, 406
PstI	CTGCAG	1 cut(s)	43
PsuI	RGATCY	2 cut(s)	5, 562
RsaI	GTAC	4 cut(s)	134, 305, 383, 497
RsaNI	GTAC	4 cut(s)	133, 304, 382, 496
RseI	CAYNNNNRTG	1 cut(s)	599
SatI	GCNGC	5 cut(s)	42, 45, 158, 161, 164
Sau3AI	GATC	3 cut(s)	5, 503, 562
SchI	GAGTC	2 cut(s)	29, 260
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	9 cut(s)	49, 129, 150, 340, 367, 513, 525, 549, 577
SfcI	CTRYAG	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	599
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
SphI	GCATGC	1 cut(s)	493
Sse9I	AATT	1 cut(s)	191
SsiI	CCGC	5 cut(s)	155, 158, 161, 164, 183
TaaI	ACNGT	1 cut(s)	292
TaiI	ACGT	3 cut(s)	129, 150, 340
TaqI	TCGA	2 cut(s)	207, 441
TasI	AATT	1 cut(s)	191
TatI	WGTACW	2 cut(s)	381, 495
TauI	GCSGC	3 cut(s)	160, 163, 166
TscAI	CASTG	1 cut(s)	355
TseFI	GTSAC	1 cut(s)	511
TseI	GCWGC	2 cut(s)	41, 44
Tsp45I	GTSAC	1 cut(s)	511
TspDTI	ATGAA	1 cut(s)	117
TspGWI	ACGGA	2 cut(s)	244, 488
TspRI	CASTG	1 cut(s)	355
VneI	GTGCAC	1 cut(s)	119
XapI	RAATTY	1 cut(s)	191
XceI	RCATGY	1 cut(s)	493
Zsp2I	ATGCAT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.