Rmu_sc0006366.1_g000007

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006366.1
N/A
Physical Location & Seq
Forward (+)
33969 .. 34894
926 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 564 bp
atgaaaaccgcaccttcgacaccggtttggtggccggagacggtcgaaatcgcaggaaatcgacaaaacttcaaaattgctgcaatgagcttcacgactcaaattcgagctcctctggccgatcgtggggtgaccggagaaggaagaaatcggtggaagaaaaatcgggccgaagaggaggaaaggatcaggggagagcagagagaaaactcggttcgggacgttacaacctacacctttggggtcgccgtaatctgctaccctgaaagtaccgatgagctatgcgacctcaactctgttttgcaacccattaaccatttctctaccgctatgacagaggatttcactatgagcgatgaaggtaagttgggtgtcttttctcaaagagtggaggataaacttgatcttgaatggacttgtgctgtgattgttaagttgatggggggtcctaatactgagaatgcaattgattttatgcatcgagccttgactagaaaatggaagctcaagggaccatggcagcttattgatttaccaaattcctttttcattatgaaattttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

187

Amino Acids

21.44

Weight (kDa)

5.8

Isoelectric Point (pI)

33.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 9, 327
AclWI GGATC 1 cut(s) 194
AcoI YGGCCR 2 cut(s) 32, 117
AcsI RAATTY 3 cut(s) 102, 538, 557
AfaI GTAC 1 cut(s) 271
AfiI CCNNNNNNNGG 1 cut(s) 126
AgeI ACCGGT 1 cut(s) 22
AgsI TTSAA 2 cut(s) 73, 410
AluBI AGCT 5 cut(s) 90, 110, 280, 505, 523
AluI AGCT 5 cut(s) 90, 110, 280, 505, 523
Alw21I GWGCWC 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 1 cut(s) 194
AoxI GGCC 3 cut(s) 32, 117, 168
ApeKI GCWGC 2 cut(s) 80, 520
ApoI RAATTY 3 cut(s) 102, 538, 557
AsiGI ACCGGT 1 cut(s) 22
AspS9I GGNCC 3 cut(s) 168, 446, 512
AsuHPI GGTGA 1 cut(s) 142
AvaII GGWCC 2 cut(s) 446, 512
BanII GRGCYC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 112
BbvI GCAGC 2 cut(s) 67, 532
BccI CCATC 1 cut(s) 433
BceAI ACGGC 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 1 cut(s) 492
BisI GCNGC 2 cut(s) 81, 521
BlsI GCNGC 2 cut(s) 82, 522
Bme18I GGWCC 2 cut(s) 446, 512
BmgT120I GGNCC 3 cut(s) 168, 446, 512
BmiI GGNNCC 2 cut(s) 447, 513
BmsI GCATC 1 cut(s) 487
BpuEI CTTGAG 1 cut(s) 491
BsaJI CCNNGG 1 cut(s) 515
BsaWI WCCGGW 2 cut(s) 22, 134
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse118I RCCGGY 1 cut(s) 22
Bse3DI GCAATG 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 515
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 447
BseRI GAGGAG 2 cut(s) 102, 191
BseXI GCAGC 2 cut(s) 67, 532
Bsh1285I CGRYCG 2 cut(s) 45, 124
BshFI GGCC 3 cut(s) 34, 119, 170
BshTI ACCGGT 1 cut(s) 22
BsiEI CGRYCG 2 cut(s) 45, 124
BsiHKAI GWGCWC 1 cut(s) 112
BsiSI CCGG 3 cut(s) 23, 35, 135
BslFI GGGAC 2 cut(s) 233, 525
BslI CCNNNNNNNGG 1 cut(s) 126
BsmAI GTCTC 1 cut(s) 32
BsmBI CGTCTC 1 cut(s) 32
BsmFI GGGAC 2 cut(s) 233, 525
BsmI GAATGC 1 cut(s) 466
BsnI GGCC 3 cut(s) 34, 119, 170
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 3 cut(s) 121, 186, 403
Bsp19I CCATGG 1 cut(s) 515
BspACI CCGC 2 cut(s) 9, 327
BspANI GGCC 3 cut(s) 34, 119, 170
BspCNI CTCAG 1 cut(s) 448
BspLI GGNNCC 2 cut(s) 447, 513
BspPI GGATC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 90
BsrFI RCCGGY 1 cut(s) 22
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 515
BssMI GATC 3 cut(s) 121, 186, 403
BssT1I CCWWGG 1 cut(s) 515
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 456
BstDSI CCRYGG 1 cut(s) 515
BstEII GGTNACC 1 cut(s) 130
BstKTI GATC 3 cut(s) 124, 189, 406
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 3 cut(s) 121, 186, 403
BstMCI CGRYCG 2 cut(s) 45, 124
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstPI GGTNACC 1 cut(s) 130
BstV1I GCAGC 2 cut(s) 67, 532
BsuRI GGCC 3 cut(s) 34, 119, 170
BtgI CCRYGG 1 cut(s) 515
BtgZI GCGATG 1 cut(s) 369
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 3 cut(s) 168, 446, 512
Csp6I GTAC 1 cut(s) 270
CspAI ACCGGT 1 cut(s) 22
CviAII CATG 1 cut(s) 516
CviJI RGCY 9 cut(s) 34, 90, 110, 119, 170, 280, 485, 505, 523
CviKI_1 RGCY 9 cut(s) 34, 90, 110, 119, 170, 280, 485, 505, 523
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 1 cut(s) 456
DpnI GATC 3 cut(s) 123, 188, 405
DpnII GATC 3 cut(s) 121, 186, 403
EaeI YGGCCR 2 cut(s) 32, 117
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Ecl136II GAGCTC 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 515
Eco24I GRGCYC 1 cut(s) 112
Eco47I GGWCC 2 cut(s) 446, 512
Eco53kI GAGCTC 1 cut(s) 110
Eco91I GGTNACC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 446
EcoO65I GGTNACC 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 515
EcoT22I ATGCAT 1 cut(s) 480
EcoT38I GRGCYC 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 515
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 1 cut(s) 519
FaiI YATR 6 cut(s) 283, 332, 350, 476, 517, 554
FaqI GGGAC 2 cut(s) 233, 525
FatI CATG 1 cut(s) 515
Fnu4HI GCNGC 2 cut(s) 81, 521
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 2 cut(s) 81, 521
FspBI CTAG 1 cut(s) 492
GluI GCNGC 2 cut(s) 81, 521
HaeIII GGCC 3 cut(s) 34, 119, 170
HapII CCGG 3 cut(s) 23, 35, 135
Hin1II CATG 1 cut(s) 519
HinfI GANTC 1 cut(s) 97
HpaII CCGG 3 cut(s) 23, 35, 135
HphI GGTGA 1 cut(s) 142
Hpy188III TCNNGA 3 cut(s) 94, 218, 407
HpyAV CCTTC 3 cut(s) 24, 134, 353
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 4 cut(s) 83, 304, 464, 478
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 1 cut(s) 456
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 1 cut(s) 519
Kzo9I GATC 3 cut(s) 121, 186, 403
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 7 cut(s) 36, 39, 48, 101, 148, 175, 276
Lsp1109I GCAGC 2 cut(s) 67, 532
LweI GCATC 1 cut(s) 487
MaeI CTAG 1 cut(s) 492
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 2 cut(s) 130, 223
MalI GATC 3 cut(s) 123, 188, 405
MboI GATC 3 cut(s) 121, 186, 403
MboII GAAGA 3 cut(s) 156, 169, 185
MfeI CAATTG 1 cut(s) 465
MhlI GDGCHC 1 cut(s) 112
MluCI AATT 5 cut(s) 75, 102, 465, 538, 557
MlyI GAGTC 1 cut(s) 91
MnlI CCTC 6 cut(s) 123, 169, 172, 299, 331, 385
Mph1103I ATGCAT 1 cut(s) 480
MseI TTAA 2 cut(s) 312, 432
MspI CCGG 3 cut(s) 23, 35, 135
MunI CAATTG 1 cut(s) 465
Mva1269I GAATGC 1 cut(s) 466
MwoI GCNNNNNNNGC 1 cut(s) 116
NcoI CCATGG 1 cut(s) 515
NdeII GATC 3 cut(s) 121, 186, 403
NlaIII CATG 1 cut(s) 519
NlaIV GGNNCC 2 cut(s) 447, 513
NmuCI GTSAC 1 cut(s) 130
NsiI ATGCAT 1 cut(s) 480
PctI GAATGC 1 cut(s) 466
PinAI ACCGGT 1 cut(s) 22
PkrI GCNGC 2 cut(s) 82, 522
Ple19I CGATCG 1 cut(s) 124
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PpuMI RGGWCCY 1 cut(s) 446
Psp124BI GAGCTC 1 cut(s) 112
Psp5II RGGWCCY 1 cut(s) 446
PspEI GGTNACC 1 cut(s) 130
PspN4I GGNNCC 2 cut(s) 447, 513
PspPI GGNCC 3 cut(s) 168, 446, 512
PspPPI RGGWCCY 1 cut(s) 446
PvuI CGATCG 1 cut(s) 124
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SacI GAGCTC 1 cut(s) 112
SaqAI TTAA 2 cut(s) 312, 432
SatI GCNGC 2 cut(s) 81, 521
Sau3AI GATC 3 cut(s) 121, 186, 403
Sau96I GGNCC 3 cut(s) 168, 446, 512
SchI GAGTC 1 cut(s) 91
SduI GDGCHC 1 cut(s) 112
SfaNI GCATC 1 cut(s) 487
SinI GGWCC 2 cut(s) 446, 512
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 5 cut(s) 75, 102, 465, 538, 557
SsiI CCGC 2 cut(s) 9, 327
SspMI CTAG 1 cut(s) 492
SstI GAGCTC 1 cut(s) 112
StyI CCWWGG 1 cut(s) 515
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 1 cut(s) 225
TaqI TCGA 5 cut(s) 17, 45, 61, 106, 481
TasI AATT 5 cut(s) 75, 102, 465, 538, 557
Tru1I TTAA 2 cut(s) 312, 432
Tru9I TTAA 2 cut(s) 312, 432
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 2 cut(s) 80, 520
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 3 cut(s) 17, 372, 538
VpaK11BI GGWCC 2 cut(s) 446, 512
XapI RAATTY 3 cut(s) 102, 538, 557
XspI CTAG 1 cut(s) 492
Zsp2I ATGCAT 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.