Rmu_sc0006380.1_g000003

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006380.1
N/A
Physical Location & Seq
Forward (+)
7606 .. 11115
3510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006380.1_g000003.1.cds

Sequence Viewer

Length: 3510 bp
atgagatctttagcttttgaaaaagtacgccctctagtttactgcattttcttgtatgttcacctactttcatcacaaaactactttccacatattgcttctgctagttcaactactgaagcagaggctcttctcaaatggaaagccagctttctaaatcaaacctcccataataaccagctcaaggattggatttatcttcccaagactactgataccaatgccaccaaatcttctagaaaccccaaagcaaacgaaagcccatgcatttggactggtatttcatgcaatgctgctggaagtgtcaccaacgtaaccattaccagttgcggtatacagggtatgctacatgatttttcattctcatcattccccaatctcgaatatcttgaccttagcttcaataaactctttgacgtcatcccacctgaaatcagttccctctccaaactcttccatcttgacctctccagcaaccagttctccgggagaattccaccagaaattggtcttctaagaaatctcagccttctatatctctatagaaataatcttcatgatgttattcctcattcgatatggaaccttaaatcattggtggatctagattttagcatcaatcaactcagtggttcaattccgacaacattgggtgatctgacaaaccttaccactctctatcttgctttaaataatctttctggaaccattcctacggagatagggaacctaaaatcattggtgaatctttcattgagcgttaatcaactcagtggttcaattccgacaacattgggtgatttgaccaacctttccactctctatctcaattcaaataatctttctggcaccattccaaaagagttagggaatctaaaatctttggtgaatctagaattgagcgtcaatcaactcagtggttcaattccgacaacattgggtgatctgaccaacctttccactctctatctctattcaaataatctttccggcaccattccaaaagagttagggaacctaaaatcattggtggatctagagttgagcatcaatcaactcagtggttcaattccgacaacattgggtgatctgaccaacctttccactctctatctccattcaaataatctttccggaaccattccaaaagagttagggaacctaaaatcattggtggatctatcattgagcagtaatcaactcagtggttcaattccgacaacattgggtgatctgaccaacctttccactctctatctctattcaaataatctttccggcaccattccaaaagagttagggaacctaaaatcattggtggatctagagttgagcatcaatcaactcagtggttcaattccgacaacattgggtgatctgaccaaccttaccactctctatcttgatttaaataatctttctggaaccattcctacggagatagggaacctaaaatcagtggtgaatctatcattgagcagtaatcaactcagtggttcaattccgacaacattgggtgatctgaccaacctttccactctctatctccattcaaataatctttctggcaccattccaaaagagttagggaacctaaaatctttagtgaacctagcattgagcaccaatcaactcagtggttcaattccgacagcattcgctgacttgcaatccttggaagcccttttccttcgtaacaaccaactttctggctccatcccccaaaatataggaaatatccagaagttgacaaaattgcacttaggtataaaccaattttctggttgtttgccacaaaacatttgccgaagcggatcactcacaaacttttcagcagaaagcaaccatctaattggtccaatctcggaaagcttgaaaacctgcacgagcttaatcagagtccatcttgaagggaaccaattgacaggtaacatctcagaacacttcggtgtttatccaaatctgaattttatagacttgagtcgtaataaattttatggtgaactctcacaaaattggggactgtgcccaaatataacaactctacgaatagctggaaacaaccttactggttctataccacctgagattggagaagcaacccaaattcatgagctagatctttcttcaaatagtttagttgggatgattccgaaggagtttgggagattgacttcaatggtgaagctgatattggatagtaaccaactttcaggtcgtgtccctttagagttaaaatcattgacagatctagaatatcttgatctatcaacaaacaatttcaatgattcaattccaagcttttttggtgattttctcaagttatattacttaaatttgagcaacaacatgttcggtcaagtaattccatttcagttggggaagttagttcagctgtcccaactagatttgagttttaatgcacttgatggtcatatagcatcagatattagcaaaatgcagagtctggagatacttaatatatcccacaacaatctttctggtttcattccaacaagtatggaagacatgcatgggctaacggatgttgacgtatcctacaatcacttggaaggtccacttcccaacatcaaagcatttcaagctgctccccaagaagcattacaagggaacaaaggcttctgcggcaacacaacatttttgcaaccctgtacttctagccaaagaaaggaccctaaactcgtacttatgatgatcttcgttgttctcggagcacttgcacttctagcctttatatttgctcttgtagcaaaaaggaaaaagaagcatcaacatctagaagaaaaaagctgggatggagaaatttctttttcaatattcaagtttgatgggaagacgatgtatgaggaaatcgtaagggcaacagaagattttgattccatgtattgcatagggaagggagaacatggaagtgtctatagagcaactttgtcaaattctaacacagtagctgtgaagaaactccatttattatgcactgatgacgagaatcttcaaaaagaattcttcaatgaaatcagggcactaactgagatgcgacacagaaatattgtgaagctttatggtttctgttcacatatgcgacactcatttttggtgtatgagtatctcgaaaagggtagtttggctggagtgttgaggtcaaatgaggaagctaaggaactggggtggagtgaaagggtgaatatcatgaaaggtgtagcccatgccttgtgttacatgcaccacgattgcttgacaccaattatgcatcgggacatatcaagtaagaacattttgctagatgctgaatataaggcatgtgtttcagacttcggcactgcaaaattcttaaacccagactcagctaattggactacccttgcaggcacctatggatatattgcaccaggtaatattccttttctttgctttgaaggaccttgcatatctccatatttaatatatatgtttttgagtcatgattcctttgaggacctttgcacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

1169

Amino Acids

128.4

Weight (kDa)

5.72

Isoelectric Point (pI)

27.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 420
Acc36I ACCTGC 1 cut(s) 1889
AccB1I GGYRCC 5 cut(s) 848, 992, 1280, 1568, 3389
AccB7I CCANNNNNTGG 1 cut(s) 506
AccI GTMKAC 1 cut(s) 334
AccIII TCCGGA 1 cut(s) 1133
AciI CCGC 3 cut(s) 330, 1812, 2646
AclWI GGATC 5 cut(s) 609, 1041, 1185, 1329, 1822
AcsI RAATTY 9 cut(s) 492, 1966, 1991, 2106, 2335, 2823, 2956, 3023, 3347
AcuI CTGAAG 1 cut(s) 138
AcyI GRCGYC 1 cut(s) 417
AfaI GTAC 3 cut(s) 27, 2674, 2706
AfiI CCNNNNNNNGG 4 cut(s) 184, 506, 2090, 2689
AflIII ACRYGT 1 cut(s) 2349
AjnI CCWGG 1 cut(s) 3409
AjuI GAANNNNNNNTTGG 2 cut(s) 2177, 2209
AleI CACNNNNGTG 1 cut(s) 1947
Alw21I GWGCWC 2 cut(s) 1625, 2737
AlwI GGATC 5 cut(s) 609, 1041, 1185, 1329, 1822
AlwNI CAGNNNCTG 2 cut(s) 2467, 2972
Aor13HI TCCGGA 1 cut(s) 1133
ApeKI GCWGC 2 cut(s) 293, 2606
ApoI RAATTY 9 cut(s) 492, 1966, 1991, 2106, 2335, 2823, 2956, 3023, 3347
AspS9I GGNCC 5 cut(s) 1856, 2576, 2692, 3440, 3496
AsuC2I CCSGG 1 cut(s) 487
AvaII GGWCC 5 cut(s) 1856, 2576, 2692, 3440, 3496
BaeGI GKGCMC 2 cut(s) 2030, 3046
BanI GGYRCC 5 cut(s) 848, 992, 1280, 1568, 3389
BauI CACGAG 1 cut(s) 1885
BbsI GAAGAC 3 cut(s) 503, 2532, 2861
Bbv12I GWGCWC 2 cut(s) 1625, 2737
BbvI GCAGC 2 cut(s) 280, 2593
BccI CCATC 7 cut(s) 465, 1724, 1854, 1911, 2423, 2810, 2843
BciT130I CCWGG 1 cut(s) 3411
BciVI GTATCC 1 cut(s) 2566
BcnI CCSGG 1 cut(s) 487
BfmI CTRYAG 2 cut(s) 541, 2938
BfuAI ACCTGC 1 cut(s) 1889
BfuI GTATCC 1 cut(s) 2566
BglII AGATCT 3 cut(s) 5, 2119, 2248
BisI GCNGC 3 cut(s) 294, 2607, 2647
BlsI GCNGC 3 cut(s) 295, 2608, 2648
Bme1390I CCNGG 2 cut(s) 487, 3411
Bme18I GGWCC 5 cut(s) 1856, 2576, 2692, 3440, 3496
BmgT120I GGNCC 5 cut(s) 1856, 2576, 2692, 3440, 3496
BmrFI CCNGG 2 cut(s) 487, 3411
BmrI ACTGGG 1 cut(s) 3194
BmsI GCATC 8 cut(s) 624, 1056, 1344, 2450, 2797, 3045, 3280, 3295
BmuI ACTGGG 1 cut(s) 3194
BoxI GACNNNNGTC 1 cut(s) 1980
BpiI GAAGAC 3 cut(s) 503, 2532, 2861
BpmI CTGGAG 3 cut(s) 454, 2489, 3171
Bpu10I CCTNAGC 2 cut(s) 395, 3177
BpuEI CTTGAG 3 cut(s) 167, 1999, 2303
BpuMI CCSGG 1 cut(s) 487
BsaHI GRCGYC 1 cut(s) 417
BsaJI CCNNGG 1 cut(s) 1674
BsaWI WCCGGW 1 cut(s) 1133
BsaXI ACNNNNNCTCC 2 cut(s) 467, 497
Bsc4I CCNNNNNNNGG 4 cut(s) 184, 506, 2090, 2689
Bse1I ACTGG 5 cut(s) 280, 324, 478, 2074, 3189
Bse3DI GCAATG 1 cut(s) 295
BseAI TCCGGA 1 cut(s) 1133
BseBI CCWGG 1 cut(s) 3411
BseDI CCNNGG 1 cut(s) 1674
BseGI GGATG 5 cut(s) 420, 1716, 2151, 2551, 2821
BseLI CCNNNNNNNGG 4 cut(s) 184, 506, 2090, 2689
BseMI GCAATG 1 cut(s) 295
BseNI ACTGG 5 cut(s) 280, 324, 478, 2074, 3189
BseSI GKGCMC 2 cut(s) 2030, 3046
BseXI GCAGC 2 cut(s) 280, 2593
BseYI CCCAGC 1 cut(s) 2811
BsgI GTGCAG 1 cut(s) 1867
BshNI GGYRCC 5 cut(s) 848, 992, 1280, 1568, 3389
BsiHKAI GWGCWC 2 cut(s) 1625, 2737
BsiSI CCGG 4 cut(s) 486, 990, 1134, 1278
BslFI GGGAC 4 cut(s) 2034, 2207, 2383, 3290
BslI CCNNNNNNNGG 4 cut(s) 184, 506, 2090, 2689
BsmFI GGGAC 4 cut(s) 2034, 2207, 2383, 3290
BsmI GAATGC 1 cut(s) 1655
Bsp1286I GDGCHC 4 cut(s) 1625, 2030, 2737, 3046
Bsp13I TCCGGA 1 cut(s) 1133
BspACI CCGC 3 cut(s) 330, 1812, 2646
BspEI TCCGGA 1 cut(s) 1133
BspHI TCATGA 4 cut(s) 556, 2110, 3210, 3481
BspMI ACCTGC 1 cut(s) 1889
BspPI GGATC 5 cut(s) 609, 1041, 1185, 1329, 1822
BspQI GCTCTTC 1 cut(s) 135
BspT107I GGYRCC 5 cut(s) 848, 992, 1280, 1568, 3389
BsrDI GCAATG 1 cut(s) 295
BsrI ACTGG 5 cut(s) 280, 324, 478, 2074, 3189
BssECI CCNNGG 1 cut(s) 1674
BssNAI GTATAC 1 cut(s) 335
BssNI GRCGYC 1 cut(s) 417
BssSI CACGAG 1 cut(s) 1885
BssT1I CCWWGG 1 cut(s) 1674
Bst1107I GTATAC 1 cut(s) 335
Bst2BI CACGAG 1 cut(s) 1885
Bst2UI CCWGG 1 cut(s) 3411
Bst4CI ACNGT 2 cut(s) 2025, 2968
Bst6I CTCTTC 2 cut(s) 135, 458
BstACI GRCGYC 1 cut(s) 417
BstC8I GCNNGC 2 cut(s) 148, 3388
BstF5I GGATG 5 cut(s) 420, 1716, 2151, 2551, 2821
BstMWI GCNNNNNNNGC 4 cut(s) 2603, 2646, 2747, 2768
BstNI CCWGG 1 cut(s) 3411
BstNSI RCATGY 4 cut(s) 2353, 2533, 3244, 3324
BstPAI GACNNNNGTC 1 cut(s) 1980
BstSCI CCNGG 2 cut(s) 485, 3409
BstSFI CTRYAG 2 cut(s) 541, 2938
BstSLI GKGCMC 2 cut(s) 2030, 3046
BstV1I GCAGC 2 cut(s) 280, 2593
BstV2I GAAGAC 3 cut(s) 503, 2532, 2861
BstX2I RGATCY 7 cut(s) 5, 601, 1033, 1177, 1321, 2119, 2248
BstXI CCANNNNNNTGG 4 cut(s) 270, 1709, 1781, 1853
BstYI RGATCY 7 cut(s) 5, 601, 1033, 1177, 1321, 2119, 2248
BstZ17I GTATAC 1 cut(s) 335
BsuI GTATCC 1 cut(s) 2566
BtsCI GGATG 5 cut(s) 420, 1716, 2151, 2551, 2821
BtsI GCAGTG 1 cut(s) 3339
BveI ACCTGC 1 cut(s) 1889
Cac8I GCNNGC 2 cut(s) 148, 3388
CaiI CAGNNNCTG 2 cut(s) 2467, 2972
CciI TCATGA 4 cut(s) 556, 2110, 3210, 3481
Cfr13I GGNCC 5 cut(s) 1856, 2576, 2692, 3440, 3496
CseI GACGC 1 cut(s) 892
CsiI ACCWGGT 1 cut(s) 3409
Csp6I GTAC 3 cut(s) 26, 2673, 2705
CviQI GTAC 3 cut(s) 26, 2673, 2705
DraI TTTAAA 2 cut(s) 690, 1410
Eam1104I CTCTTC 2 cut(s) 135, 458
EarI CTCTTC 2 cut(s) 135, 458
Eco130I CCWWGG 1 cut(s) 1674
Eco47I GGWCC 5 cut(s) 1856, 2576, 2692, 3440, 3496
Eco57I CTGAAG 1 cut(s) 138
EcoO109I RGGNCCY 3 cut(s) 2692, 3440, 3496
EcoRI GAATTC 2 cut(s) 492, 3023
EcoRII CCWGG 1 cut(s) 3409
EcoT14I CCWWGG 1 cut(s) 1674
EcoT22I ATGCAT 3 cut(s) 269, 2535, 3273
ErhI CCWWGG 1 cut(s) 1674
FalI AAGNNNNNCTT 2 cut(s) 2565, 2597
FaqI GGGAC 4 cut(s) 2034, 2207, 2383, 3290
FauNDI CATATG 1 cut(s) 3099
FblI GTMKAC 1 cut(s) 334
Fnu4HI GCNGC 3 cut(s) 294, 2607, 2647
FokI GGATG 5 cut(s) 407, 1703, 2158, 2558, 2828
Fsp4HI GCNGC 3 cut(s) 294, 2607, 2647
GluI GCNGC 3 cut(s) 294, 2607, 2647
GsaI CCCAGC 1 cut(s) 2815
GsuI CTGGAG 3 cut(s) 454, 2489, 3171
HapII CCGG 4 cut(s) 486, 990, 1134, 1278
HgaI GACGC 1 cut(s) 892
Hin1I GRCGYC 1 cut(s) 417
HincII GTYRAC 2 cut(s) 1749, 2551
HindII GTYRAC 2 cut(s) 1749, 2551
HindIII AAGCTT 3 cut(s) 1870, 2299, 3077
HpaII CCGG 4 cut(s) 486, 990, 1134, 1278
Hpy166II GTNNAC 9 cut(s) 40, 61, 335, 1609, 1749, 2003, 2551, 2579, 3095
Hpy8I GTNNAC 9 cut(s) 40, 61, 335, 1609, 1749, 2003, 2551, 2579, 3095
HpyAV CCTTC 7 cut(s) 539, 1700, 1904, 2149, 2567, 2911, 3431
HpyCH4III ACNGT 2 cut(s) 2025, 2968
HpyCH4IV ACGT 3 cut(s) 312, 417, 2553
HpyF10VI GCNNNNNNNGC 4 cut(s) 2603, 2646, 2747, 2768
HpySE526I ACGT 3 cut(s) 312, 417, 2553
Hsp92I GRCGYC 1 cut(s) 417
Kpn2I TCCGGA 1 cut(s) 1133
LguI GCTCTTC 1 cut(s) 135
LmnI GCTCC 3 cut(s) 1718, 2614, 2732
Lsp1109I GCAGC 2 cut(s) 280, 2593
LweI GCATC 8 cut(s) 624, 1056, 1344, 2450, 2797, 3045, 3280, 3295
MabI ACCWGGT 1 cut(s) 3409
MaeII ACGT 3 cut(s) 312, 417, 2553
MaeIII GTNAC 6 cut(s) 304, 313, 1694, 1928, 2201, 3236
MfeI CAATTG 1 cut(s) 1919
MflI RGATCY 7 cut(s) 5, 601, 1033, 1177, 1321, 2119, 2248
MhlI GDGCHC 4 cut(s) 1625, 2030, 2737, 3046
MlyI GAGTC 5 cut(s) 1908, 1990, 2473, 3356, 3487
MmeI TCCRAC 9 cut(s) 665, 809, 953, 1097, 1241, 1385, 1529, 1673, 2537
Mph1103I ATGCAT 3 cut(s) 269, 2535, 3273
MroI TCCGGA 1 cut(s) 1133
MslI CAYNNNNRTG 2 cut(s) 1947, 2931
MspA1I CMGCKG 1 cut(s) 2395
MspI CCGG 4 cut(s) 486, 990, 1134, 1278
MspR9I CCNGG 2 cut(s) 487, 3411
MunI CAATTG 1 cut(s) 1919
Mva1269I GAATGC 1 cut(s) 1655
MvaI CCWGG 1 cut(s) 3411
MwoI GCNNNNNNNGC 4 cut(s) 2603, 2646, 2747, 2768
NciI CCSGG 1 cut(s) 487
NdeI CATATG 1 cut(s) 3099
NmuCI GTSAC 1 cut(s) 304
NsiI ATGCAT 3 cut(s) 269, 2535, 3273
NspI RCATGY 4 cut(s) 2353, 2533, 3244, 3324
OliI CACNNNNGTG 1 cut(s) 1947
PagI TCATGA 4 cut(s) 556, 2110, 3210, 3481
PciI ACATGT 1 cut(s) 2349
PciSI GCTCTTC 1 cut(s) 135
PctI GAATGC 1 cut(s) 1655
PfeI GAWTC 9 cut(s) 745, 871, 889, 1465, 2149, 2288, 2897, 3010, 3485
PflMI CCANNNNNTGG 1 cut(s) 506
PfoI TCCNGGA 1 cut(s) 485
PkrI GCNGC 3 cut(s) 295, 2608, 2648
PleI GAGTC 5 cut(s) 1907, 1989, 2472, 3356, 3486
PpsI GAGTC 5 cut(s) 1907, 1989, 2472, 3356, 3486
PpuMI RGGWCCY 3 cut(s) 2692, 3440, 3496
PscI ACATGT 1 cut(s) 2349
PshAI GACNNNNGTC 1 cut(s) 1980
Psp5II RGGWCCY 3 cut(s) 2692, 3440, 3496
Psp6I CCWGG 1 cut(s) 3409
PspFI CCCAGC 1 cut(s) 2811
PspGI CCWGG 1 cut(s) 3409
PspPI GGNCC 5 cut(s) 1856, 2576, 2692, 3440, 3496
PspPPI RGGWCCY 3 cut(s) 2692, 3440, 3496
PsrI GAACNNNNNNTAC 4 cut(s) 697, 729, 1417, 1449
PstNI CAGNNNCTG 2 cut(s) 2467, 2972
PsuI RGATCY 7 cut(s) 5, 601, 1033, 1177, 1321, 2119, 2248
PvuII CAGCTG 1 cut(s) 2395
RsaI GTAC 3 cut(s) 27, 2674, 2706
RsaNI GTAC 3 cut(s) 26, 2673, 2705
RseI CAYNNNNRTG 2 cut(s) 1947, 2931
SapI GCTCTTC 1 cut(s) 135
SatI GCNGC 3 cut(s) 294, 2607, 2647
Sau96I GGNCC 5 cut(s) 1856, 2576, 2692, 3440, 3496
SchI GAGTC 5 cut(s) 1908, 1990, 2473, 3356, 3487
ScrFI CCNGG 2 cut(s) 487, 3411
SduI GDGCHC 4 cut(s) 1625, 2030, 2737, 3046
SexAI ACCWGGT 1 cut(s) 3409
SfaNI GCATC 8 cut(s) 624, 1056, 1344, 2450, 2797, 3045, 3280, 3295
SfcI CTRYAG 2 cut(s) 541, 2938
SinI GGWCC 5 cut(s) 1856, 2576, 2692, 3440, 3496
SmiI ATTTAAAT 1 cut(s) 1410
SmiMI CAYNNNNRTG 2 cut(s) 1947, 2931
SmlI CTYRAG 3 cut(s) 182, 1978, 2318
SmoI CTYRAG 3 cut(s) 182, 1978, 2318
SsiI CCGC 3 cut(s) 330, 1812, 2646
SspI AATATT 3 cut(s) 2838, 3070, 3418
StyD4I CCNGG 2 cut(s) 485, 3409
StyI CCWWGG 1 cut(s) 1674
SwaI ATTTAAAT 1 cut(s) 1410
TaaI ACNGT 2 cut(s) 2025, 2968
TaiI ACGT 3 cut(s) 315, 420, 2556
TaqI TCGA 3 cut(s) 381, 575, 3132
TaqII GACCGA 1 cut(s) 2345
TatI WGTACW 1 cut(s) 2672
TauI GCSGC 1 cut(s) 2649
TfiI GAWTC 9 cut(s) 745, 871, 889, 1465, 2149, 2288, 2897, 3010, 3485
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 2 cut(s) 293, 2606
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 9 cut(s) 60, 273, 348, 545, 741, 2099, 2497, 3048, 3227
TspGWI ACGGA 3 cut(s) 731, 1451, 2558
Van91I CCANNNNNTGG 1 cut(s) 506
VpaK11BI GGWCC 5 cut(s) 1856, 2576, 2692, 3440, 3496
XapI RAATTY 9 cut(s) 492, 1966, 1991, 2106, 2335, 2823, 2956, 3023, 3347
XbaI TCTAGA 7 cut(s) 236, 604, 892, 1036, 1324, 2251, 2797
XceI RCATGY 4 cut(s) 2353, 2533, 3244, 3324
XmiI GTMKAC 1 cut(s) 334
ZraI GACGTC 1 cut(s) 418
Zsp2I ATGCAT 3 cut(s) 269, 2535, 3273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.