Rmu_sc0006431.1_g000009

Dienelactone hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006431.1
N/A
Physical Location & Seq
Forward (+)
29713 .. 38589
8877 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1029 bp
atgtcaacttctgcagcttgcttcgagaacccaccaacactaagctcaacgtacggaaaaggaactgtcctagaatttgggggcctgaagacttacgttactggctcaactgaatctaagcttgcagtccttctagtctccaatgtttttggagacgaggattctaaatcagtccttgctgcattaaagagtcaaggtgtttctgcaataggagctgcaggattttgctggggaggggttgtagtggcaaaacttgcaaaatctgatgacattaaggctgctgtgatattgcatcctggccggttagcagatgaagatatacatgaggttaaggttcatactgcaatattgggagctgagattgacaaaacttcaccaccagaacaattgaaacaatttgaggagattttatcagtgaagtctgagctcgttgtcagtagtgttgtttgtgatcagagaaatacagaagaaataatgtcaggccctcagtgctgcgcggacccaccgaccctgaacccaaccagtggatccggccacattgagaagcttggtggtcttgactcctatctcactggctcccctgactccaagtttgccattgttcttgtctccgacatttttggctatgatgctccaaacttgaggaagctcgcagacaaagttgcagctgctggcttctttgttgtggtccctgacttcttttatggagacccttatgtacctccagctgatggatcccgggactctctacctacttggctgaaaggtcatggaccggagaagggatttgaagatgttaaactagttattggagctctaaaaagtaaaggcgtctctgcaatcggtgctgcaggcttctgttggggagtacctgacctttgccccattctaaacttcagtacctcacattcagaaaatatcagaacggtacctgaagttctgaccccgaccgaagaatggtacctggagccgttagctccgttacagaagttgacaattgaaggatattttcgtcttttcatgtcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

342

Amino Acids

36.32

Weight (kDa)

4.89

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 56 - 138 1.1e-08 Dienelactone hydrolase family
DLH PF01738 187 - 289 5.9e-11 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 928, 960
AccB1I GGYRCC 2 cut(s) 928, 960
AccB7I CCANNNNNTGG 2 cut(s) 524, 731
AccII CGCG 1 cut(s) 497
AciI CCGC 1 cut(s) 497
AclWI GGATC 4 cut(s) 522, 535, 729, 742
AcoI YGGCCR 2 cut(s) 298, 532
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 3 cut(s) 107, 880, 954
AcyI GRCGYC 1 cut(s) 831
AfaI GTAC 6 cut(s) 53, 720, 870, 901, 930, 962
AfiI CCNNNNNNNGG 4 cut(s) 524, 731, 782, 957
AgsI TTSAA 3 cut(s) 391, 791, 1001
AhlI ACTAGT 1 cut(s) 802
AjnI CCWGG 2 cut(s) 295, 963
Alw21I GWGCWC 2 cut(s) 429, 817
Alw26I GTCTC 5 cut(s) 142, 147, 613, 702, 838
AlwI GGATC 4 cut(s) 522, 535, 729, 742
AlwNI CAGNNNCTG 1 cut(s) 671
Ama87I CYCGRG 1 cut(s) 738
AoxI GGCC 4 cut(s) 82, 298, 481, 532
ApeKI GCWGC 8 cut(s) 14, 179, 215, 278, 492, 665, 668, 848
ApoI RAATTY 1 cut(s) 74
ArsI GACNNNNNNTTYG 2 cut(s) 575, 607
Asp718I GGTACC 2 cut(s) 928, 960
AspLEI GCGC 1 cut(s) 497
AspS9I GGNCC 5 cut(s) 82, 482, 499, 688, 773
AsuC2I CCSGG 2 cut(s) 739, 740
AsuHPI GGTGA 1 cut(s) 366
AvaI CYCGRG 1 cut(s) 738
AvaII GGWCC 3 cut(s) 499, 688, 773
BaeI ACNNNNGTAYC 2 cut(s) 883, 916
BamHI GGATCC 2 cut(s) 527, 734
BanI GGYRCC 2 cut(s) 928, 960
BanII GRGCYC 2 cut(s) 429, 817
BbsI GAAGAC 1 cut(s) 95
Bbv12I GWGCWC 2 cut(s) 429, 817
BbvI GCAGC 8 cut(s) 26, 166, 202, 265, 479, 655, 677, 835
BccI CCATC 1 cut(s) 725
BceAI ACGGC 1 cut(s) 955
BciT130I CCWGG 2 cut(s) 297, 965
BclI TGATCA 1 cut(s) 451
BcnI CCSGG 2 cut(s) 739, 740
BcoDI GTCTC 5 cut(s) 142, 147, 613, 702, 838
BcuI ACTAGT 1 cut(s) 802
BfaI CTAG 3 cut(s) 71, 134, 803
BfmI CTRYAG 3 cut(s) 12, 216, 849
BisI GCNGC 8 cut(s) 15, 180, 216, 279, 493, 666, 669, 849
BlsI GCNGC 8 cut(s) 16, 181, 217, 280, 494, 667, 670, 850
Bme1390I CCNGG 4 cut(s) 297, 739, 740, 965
Bme18I GGWCC 3 cut(s) 499, 688, 773
BmeT110I CYCGRG 1 cut(s) 738
BmgT120I GGNCC 5 cut(s) 82, 482, 499, 688, 773
BmiI GGNNCC 9 cut(s) 83, 501, 529, 577, 690, 736, 930, 962, 969
BmrFI CCNGG 4 cut(s) 297, 739, 740, 965
BmsI GCATC 2 cut(s) 301, 619
BpiI GAAGAC 1 cut(s) 95
BpmI CTGGAG 2 cut(s) 708, 986
BpuEI CTTGAG 1 cut(s) 661
BpuMI CCSGG 2 cut(s) 739, 740
BsaHI GRCGYC 1 cut(s) 831
BsaI GGTCTC 1 cut(s) 702
BsaJI CCNNGG 1 cut(s) 738
BsaWI WCCGGW 1 cut(s) 775
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bsc4I CCNNNNNNNGG 4 cut(s) 524, 731, 782, 957
Bse118I RCCGGY 1 cut(s) 300
Bse1I ACTGG 3 cut(s) 106, 522, 577
BseBI CCWGG 2 cut(s) 297, 965
BseDI CCNNGG 1 cut(s) 738
BseGI GGATG 1 cut(s) 292
BseLI CCNNNNNNNGG 4 cut(s) 524, 731, 782, 957
BseMII CTCAG 3 cut(s) 348, 414, 500
BseNI ACTGG 3 cut(s) 106, 522, 577
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 8 cut(s) 26, 166, 202, 265, 479, 655, 677, 835
BseYI CCCAGC 1 cut(s) 228
Bsh1236I CGCG 1 cut(s) 497
Bsh1285I CGRYCG 1 cut(s) 951
BshFI GGCC 4 cut(s) 84, 300, 483, 534
BshNI GGYRCC 2 cut(s) 928, 960
BsiEI CGRYCG 1 cut(s) 951
BsiHKAI GWGCWC 2 cut(s) 429, 817
BsiHKCI CYCGRG 1 cut(s) 738
BsiSI CCGG 4 cut(s) 301, 531, 739, 776
BsiWI CGTACG 1 cut(s) 51
BslFI GGGAC 2 cut(s) 674, 755
BslI CCNNNNNNNGG 4 cut(s) 524, 731, 782, 957
BsmAI GTCTC 5 cut(s) 142, 147, 613, 702, 838
BsmBI CGTCTC 2 cut(s) 147, 838
BsmFI GGGAC 2 cut(s) 674, 755
BsnI GGCC 4 cut(s) 84, 300, 483, 534
Bso31I GGTCTC 1 cut(s) 702
BsoBI CYCGRG 1 cut(s) 738
Bsp1286I GDGCHC 2 cut(s) 429, 817
Bsp143I GATC 3 cut(s) 451, 527, 734
BspACI CCGC 1 cut(s) 497
BspANI GGCC 4 cut(s) 84, 300, 483, 534
BspCNI CTCAG 3 cut(s) 349, 415, 499
BspFNI CGCG 1 cut(s) 497
BspLI GGNNCC 9 cut(s) 83, 501, 529, 577, 690, 736, 930, 962, 969
BspMAI CTGCAG 3 cut(s) 16, 220, 853
BspPI GGATC 4 cut(s) 522, 535, 729, 742
BspT107I GGYRCC 2 cut(s) 928, 960
BspTNI GGTCTC 1 cut(s) 702
BsrFI RCCGGY 1 cut(s) 300
BsrI ACTGG 3 cut(s) 106, 522, 577
BssAI RCCGGY 1 cut(s) 300
BssECI CCNNGG 1 cut(s) 738
BssMI GATC 3 cut(s) 451, 527, 734
BssNI GRCGYC 1 cut(s) 831
Bst2UI CCWGG 2 cut(s) 297, 965
Bst4CI ACNGT 2 cut(s) 67, 928
BstACI GRCGYC 1 cut(s) 831
BstAPI GCANNNNNTGC 2 cut(s) 254, 845
BstC8I GCNNGC 5 cut(s) 19, 123, 651, 673, 853
BstDEI CTNAG 5 cut(s) 41, 117, 357, 423, 486
BstF5I GGATG 1 cut(s) 292
BstFNI CGCG 1 cut(s) 497
BstHHI GCGC 1 cut(s) 497
BstKTI GATC 3 cut(s) 454, 530, 737
BstMAI GTCTC 5 cut(s) 142, 147, 613, 702, 838
BstMBI GATC 3 cut(s) 451, 527, 734
BstMCI CGRYCG 1 cut(s) 951
BstMWI GCNNNNNNNGC 4 cut(s) 212, 254, 489, 845
BstNI CCWGG 2 cut(s) 297, 965
BstSCI CCNGG 4 cut(s) 295, 737, 738, 963
BstSFI CTRYAG 3 cut(s) 12, 216, 849
BstUI CGCG 1 cut(s) 497
BstV1I GCAGC 8 cut(s) 26, 166, 202, 265, 479, 655, 677, 835
BstV2I GAAGAC 1 cut(s) 95
BstX2I RGATCY 2 cut(s) 527, 734
BstYI RGATCY 2 cut(s) 527, 734
BsuRI GGCC 4 cut(s) 84, 300, 483, 534
BtsCI GGATG 1 cut(s) 292
BtsIMutI CAGTG 4 cut(s) 420, 494, 529, 570
Cac8I GCNNGC 5 cut(s) 19, 123, 651, 673, 853
CaiI CAGNNNCTG 1 cut(s) 671
CfoI GCGC 1 cut(s) 497
Cfr10I RCCGGY 1 cut(s) 300
Cfr13I GGNCC 5 cut(s) 82, 482, 499, 688, 773
Cfr9I CCCGGG 1 cut(s) 738
CseI GACGC 1 cut(s) 820
Csp6I GTAC 6 cut(s) 52, 719, 869, 900, 929, 961
CviAII CATG 3 cut(s) 323, 770, 1021
CviQI GTAC 6 cut(s) 52, 719, 869, 900, 929, 961
DdeI CTNAG 5 cut(s) 41, 117, 357, 423, 486
DpnI GATC 3 cut(s) 453, 529, 736
DpnII GATC 3 cut(s) 451, 527, 734
EaeI YGGCCR 2 cut(s) 298, 532
Ecl136II GAGCTC 2 cut(s) 427, 815
Eco24I GRGCYC 2 cut(s) 429, 817
Eco31I GGTCTC 1 cut(s) 702
Eco47I GGWCC 3 cut(s) 499, 688, 773
Eco53kI GAGCTC 2 cut(s) 427, 815
Eco57I CTGAAG 3 cut(s) 107, 880, 954
Eco88I CYCGRG 1 cut(s) 738
EcoICRI GAGCTC 2 cut(s) 427, 815
EcoO109I RGGNCCY 2 cut(s) 82, 482
EcoRII CCWGG 2 cut(s) 295, 963
EcoT38I GRGCYC 2 cut(s) 429, 817
Esp3I CGTCTC 2 cut(s) 147, 838
FaeI CATG 3 cut(s) 326, 773, 1024
FaiI YATR 8 cut(s) 320, 324, 339, 627, 705, 717, 771, 1022
FaqI GGGAC 2 cut(s) 674, 755
FatI CATG 3 cut(s) 322, 769, 1020
FbaI TGATCA 1 cut(s) 451
Fnu4HI GCNGC 8 cut(s) 15, 180, 216, 279, 493, 666, 669, 849
FokI GGATG 1 cut(s) 279
FriOI GRGCYC 2 cut(s) 429, 817
Fsp4HI GCNGC 8 cut(s) 15, 180, 216, 279, 493, 666, 669, 849
FspBI CTAG 3 cut(s) 71, 134, 803
GlaI GCGC 1 cut(s) 496
GluI GCNGC 8 cut(s) 15, 180, 216, 279, 493, 666, 669, 849
GsaI CCCAGC 1 cut(s) 232
GsuI CTGGAG 2 cut(s) 708, 986
HaeIII GGCC 4 cut(s) 84, 300, 483, 534
HapII CCGG 4 cut(s) 301, 531, 739, 776
HgaI GACGC 1 cut(s) 820
HhaI GCGC 1 cut(s) 497
Hin1I GRCGYC 1 cut(s) 831
Hin1II CATG 3 cut(s) 326, 773, 1024
Hin6I GCGC 1 cut(s) 495
HinP1I GCGC 1 cut(s) 495
HincII GTYRAC 2 cut(s) 6, 993
HindII GTYRAC 2 cut(s) 6, 993
HindIII AAGCTT 2 cut(s) 119, 545
HinfI GANTC 6 cut(s) 113, 161, 190, 560, 584, 743
HpaII CCGG 4 cut(s) 301, 531, 739, 776
HphI GGTGA 1 cut(s) 366
Hpy166II GTNNAC 2 cut(s) 6, 993
Hpy188I TCNGA 7 cut(s) 265, 424, 456, 613, 913, 923, 942
Hpy188III TCNNGA 2 cut(s) 25, 557
Hpy8I GTNNAC 2 cut(s) 6, 993
HpyAV CCTTC 3 cut(s) 140, 775, 995
HpyCH4III ACNGT 2 cut(s) 67, 928
HpyCH4IV ACGT 2 cut(s) 50, 96
HpyF10VI GCNNNNNNNGC 4 cut(s) 212, 254, 489, 845
HpyF3I CTNAG 5 cut(s) 41, 117, 357, 423, 486
HpySE526I ACGT 2 cut(s) 50, 96
Hsp92I GRCGYC 1 cut(s) 831
Hsp92II CATG 3 cut(s) 326, 773, 1024
HspAI GCGC 1 cut(s) 495
KpnI GGTACC 2 cut(s) 932, 964
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 3 cut(s) 451, 527, 734
LmnI GCTCC 7 cut(s) 212, 353, 581, 637, 812, 967, 982
Lsp1109I GCAGC 8 cut(s) 26, 166, 202, 265, 479, 655, 677, 835
LweI GCATC 2 cut(s) 301, 619
MaeI CTAG 3 cut(s) 71, 134, 803
MaeII ACGT 2 cut(s) 50, 96
MaeIII GTNAC 2 cut(s) 97, 981
MalI GATC 3 cut(s) 453, 529, 736
MboI GATC 3 cut(s) 451, 527, 734
MboII GAAGA 5 cut(s) 100, 326, 479, 803, 965
MfeI CAATTG 2 cut(s) 386, 996
MflI RGATCY 2 cut(s) 527, 734
MhlI GDGCHC 2 cut(s) 429, 817
MluCI AATT 4 cut(s) 74, 386, 395, 996
MlyI GAGTC 4 cut(s) 199, 554, 578, 737
MmeI TCCRAC 1 cut(s) 636
MnlI CCTC 8 cut(s) 151, 227, 319, 394, 495, 636, 732, 913
MseI TTAA 5 cut(s) 185, 273, 330, 798, 1027
MspA1I CMGCKG 2 cut(s) 668, 728
MspI CCGG 4 cut(s) 301, 531, 739, 776
MspR9I CCNGG 4 cut(s) 297, 739, 740, 965
MunI CAATTG 2 cut(s) 386, 996
MvaI CCWGG 2 cut(s) 297, 965
MvnI CGCG 1 cut(s) 497
MwoI GCNNNNNNNGC 4 cut(s) 212, 254, 489, 845
NciI CCSGG 2 cut(s) 739, 740
NdeII GATC 3 cut(s) 451, 527, 734
NlaIII CATG 3 cut(s) 326, 773, 1024
NlaIV GGNNCC 9 cut(s) 83, 501, 529, 577, 690, 736, 930, 962, 969
PfeI GAWTC 2 cut(s) 113, 161
Pfl23II CGTACG 1 cut(s) 51
PflMI CCANNNNNTGG 2 cut(s) 524, 731
PkrI GCNGC 8 cut(s) 16, 181, 217, 280, 494, 667, 670, 850
PleI GAGTC 4 cut(s) 198, 554, 578, 737
PpsI GAGTC 4 cut(s) 198, 554, 578, 737
Psp124BI GAGCTC 2 cut(s) 429, 817
Psp6I CCWGG 2 cut(s) 295, 963
PspFI CCCAGC 1 cut(s) 228
PspGI CCWGG 2 cut(s) 295, 963
PspLI CGTACG 1 cut(s) 51
PspN4I GGNNCC 9 cut(s) 83, 501, 529, 577, 690, 736, 930, 962, 969
PspPI GGNCC 5 cut(s) 82, 482, 499, 688, 773
PsrI GAACNNNNNNTAC 2 cut(s) 921, 953
PstI CTGCAG 3 cut(s) 16, 220, 853
PstNI CAGNNNCTG 1 cut(s) 671
PsuI RGATCY 2 cut(s) 527, 734
PvuII CAGCTG 2 cut(s) 668, 728
RsaI GTAC 6 cut(s) 53, 720, 870, 901, 930, 962
RsaNI GTAC 6 cut(s) 52, 719, 869, 900, 929, 961
SacI GAGCTC 2 cut(s) 429, 817
SaqAI TTAA 5 cut(s) 185, 273, 330, 798, 1027
SatI GCNGC 8 cut(s) 15, 180, 216, 279, 493, 666, 669, 849
Sau3AI GATC 3 cut(s) 451, 527, 734
Sau96I GGNCC 5 cut(s) 82, 482, 499, 688, 773
SchI GAGTC 4 cut(s) 199, 554, 578, 737
ScrFI CCNGG 4 cut(s) 297, 739, 740, 965
SduI GDGCHC 2 cut(s) 429, 817
SfaNI GCATC 2 cut(s) 301, 619
SfcI CTRYAG 3 cut(s) 12, 216, 849
SinI GGWCC 3 cut(s) 499, 688, 773
SmaI CCCGGG 1 cut(s) 740
SmlI CTYRAG 1 cut(s) 640
SmoI CTYRAG 1 cut(s) 640
SpeI ACTAGT 1 cut(s) 802
Sse9I AATT 4 cut(s) 74, 386, 395, 996
SsiI CCGC 1 cut(s) 497
SspI AATATT 1 cut(s) 348
SspMI CTAG 3 cut(s) 71, 134, 803
SstI GAGCTC 2 cut(s) 429, 817
StyD4I CCNGG 4 cut(s) 295, 737, 738, 963
TaaI ACNGT 2 cut(s) 67, 928
TaiI ACGT 2 cut(s) 53, 99
TaqI TCGA 1 cut(s) 24
TaqII GACCGA 1 cut(s) 965
TasI AATT 4 cut(s) 74, 386, 395, 996
TfiI GAWTC 2 cut(s) 113, 161
Tru1I TTAA 5 cut(s) 185, 273, 330, 798, 1027
Tru9I TTAA 5 cut(s) 185, 273, 330, 798, 1027
TscAI CASTG 4 cut(s) 420, 494, 529, 577
TseI GCWGC 8 cut(s) 14, 179, 215, 278, 492, 665, 668, 848
TspDTI ATGAA 3 cut(s) 326, 327, 1009
TspGWI ACGGA 2 cut(s) 69, 969
TspMI CCCGGG 1 cut(s) 738
TspRI CASTG 4 cut(s) 420, 494, 529, 577
Van91I CCANNNNNTGG 2 cut(s) 524, 731
VpaK11BI GGWCC 3 cut(s) 499, 688, 773
XapI RAATTY 1 cut(s) 74
XmaI CCCGGG 1 cut(s) 738
XspI CTAG 3 cut(s) 71, 134, 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.