Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006478.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

40266 .. 40809

Gene Structure 544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

atgagattgggtttgaagcttctgcaagaaagagccagagttggatccttctggtggccatacattagcaacctctgtgaagcgtttaatgtacctatcttcttccctggtgaggacataaagaatttgcagtatgccccagttctttacctggtaaacaagagatgcagatttcttcttgaatttgaacaagaagtcagacgtgctcttgaagataacaaaccaagtgatcacccttttggtggccaagttgtgggtgcatcagcccttggatgggccatgtcagcagtttcctctcgggcattcccgtttatatggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0003824 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010452 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018024 GO:0018026 GO:0018027 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032259 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0046975 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:0140110 GO:1901564 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

106

Amino Acids

12.21

Weight (kDa)

8.71

Isoelectric Point (pI)

54.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	253
AclWI	GGATC	2 cut(s)	39, 52
AcoI	YGGCCR	2 cut(s)	56, 244
AcsI	RAATTY	2 cut(s)	124, 182
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	6 cut(s)	54, 112, 242, 253, 273, 274
AgsI	TTSAA	4 cut(s)	16, 182, 188, 212
AjiI	CACGTC	1 cut(s)	203
AjnI	CCWGG	2 cut(s)	106, 150
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
Alw21I	GWGCWC	1 cut(s)	208
AlwI	GGATC	2 cut(s)	39, 52
Ama87I	CYCGRG	1 cut(s)	297
AoxI	GGCC	3 cut(s)	56, 244, 276
ApoI	RAATTY	2 cut(s)	124, 182
AspS9I	GGNCC	1 cut(s)	276
AsuHPI	GGTGA	2 cut(s)	122, 224
AvaI	CYCGRG	1 cut(s)	297
BalI	TGGCCA	2 cut(s)	58, 246
BamHI	GGATCC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	208
BccI	CCATC	1 cut(s)	267
BciT130I	CCWGG	2 cut(s)	108, 152
BclI	TGATCA	1 cut(s)	229
Bme1390I	CCNGG	2 cut(s)	108, 152
BmeT110I	CYCGRG	1 cut(s)	297
BmgBI	CACGTC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	2 cut(s)	108, 152
BmrI	ACTGGG	1 cut(s)	134
BmsI	GCATC	2 cut(s)	155, 269
BmuI	ACTGGG	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	106, 268
Bsc4I	CCNNNNNNNGG	6 cut(s)	54, 112, 242, 253, 273, 274
Bse1I	ACTGG	1 cut(s)	140
BseBI	CCWGG	2 cut(s)	108, 152
BseDI	CCNNGG	2 cut(s)	106, 268
BseGI	GGATG	1 cut(s)	278
BseLI	CCNNNNNNNGG	6 cut(s)	54, 112, 242, 253, 273, 274
BseNI	ACTGG	1 cut(s)	140
BshFI	GGCC	3 cut(s)	58, 246, 278
BsiHKAI	GWGCWC	1 cut(s)	208
BsiHKCI	CYCGRG	1 cut(s)	297
BslI	CCNNNNNNNGG	6 cut(s)	54, 112, 242, 253, 273, 274
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	3 cut(s)	58, 246, 278
BsoBI	CYCGRG	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	44, 229
BspANI	GGCC	3 cut(s)	58, 246, 278
BspLI	GGNNCC	1 cut(s)	46
BspPI	GGATC	2 cut(s)	39, 52
BsrI	ACTGG	1 cut(s)	140
BssECI	CCNNGG	2 cut(s)	106, 268
BssMI	GATC	2 cut(s)	44, 229
BssT1I	CCWWGG	1 cut(s)	268
Bst2UI	CCWGG	2 cut(s)	108, 152
BstF5I	GGATG	1 cut(s)	278
BstKTI	GATC	2 cut(s)	47, 232
BstMBI	GATC	2 cut(s)	44, 229
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNI	CCWGG	2 cut(s)	108, 152
BstSCI	CCNGG	2 cut(s)	106, 150
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BsuRI	GGCC	3 cut(s)	58, 246, 278
BtrI	CACGTC	1 cut(s)	203
BtsCI	GGATG	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	276
CsiI	ACCWGGT	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	1 cut(s)	280
CviJI	RGCY	6 cut(s)	19, 35, 58, 246, 266, 278
CviKI_1	RGCY	6 cut(s)	19, 35, 58, 246, 266, 278
CviQI	GTAC	1 cut(s)	92
DpnI	GATC	2 cut(s)	46, 231
DpnII	GATC	2 cut(s)	44, 229
EaeI	YGGCCR	2 cut(s)	56, 244
Eco130I	CCWWGG	1 cut(s)	268
Eco88I	CYCGRG	1 cut(s)	297
EcoRII	CCWGG	2 cut(s)	106, 150
EcoT14I	CCWWGG	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	268
FaeI	CATG	1 cut(s)	283
FaiI	YATR	6 cut(s)	61, 119, 135, 281, 314, 316
FatI	CATG	1 cut(s)	279
FbaI	TGATCA	1 cut(s)	229
FokI	GGATG	1 cut(s)	285
HaeIII	GGCC	3 cut(s)	58, 246, 278
Hin1II	CATG	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	17
HphI	GGTGA	2 cut(s)	122, 224
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	200
Hpy188III	TCNNGA	2 cut(s)	179, 209
Hpy8I	GTNNAC	1 cut(s)	157
HpyAV	CCTTC	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	4 cut(s)	25, 130, 168, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpySE526I	ACGT	1 cut(s)	202
Hsp92II	CATG	1 cut(s)	283
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	44, 229
LpnPI	CCDG	7 cut(s)	37, 49, 93, 120, 137, 153, 164
LweI	GCATC	2 cut(s)	155, 269
MabI	ACCWGGT	1 cut(s)	150
MaeII	ACGT	1 cut(s)	202
MalI	GATC	2 cut(s)	46, 231
MboI	GATC	2 cut(s)	44, 229
MboII	GAAGA	4 cut(s)	91, 94, 167, 224
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	208
MlsI	TGGCCA	2 cut(s)	58, 246
MluCI	AATT	2 cut(s)	124, 182
MluNI	TGGCCA	2 cut(s)	58, 246
MmeI	TCCRAC	1 cut(s)	22
MnlI	CCTC	3 cut(s)	83, 106, 304
Mox20I	TGGCCA	2 cut(s)	58, 246
MscI	TGGCCA	2 cut(s)	58, 246
MseI	TTAA	1 cut(s)	87
Msp20I	TGGCCA	2 cut(s)	58, 246
MspR9I	CCNGG	2 cut(s)	108, 152
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	2 cut(s)	108, 152
MwoI	GCNNNNNNNGC	1 cut(s)	284
NdeII	GATC	2 cut(s)	44, 229
NlaIII	CATG	1 cut(s)	283
NlaIV	GGNNCC	1 cut(s)	46
PctI	GAATGC	1 cut(s)	302
PflMI	CCANNNNNTGG	1 cut(s)	253
Psp6I	CCWGG	2 cut(s)	106, 150
PspGI	CCWGG	2 cut(s)	106, 150
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	276
PsuI	RGATCY	1 cut(s)	44
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	87
Sau3AI	GATC	2 cut(s)	44, 229
Sau96I	GGNCC	1 cut(s)	276
ScrFI	CCNGG	2 cut(s)	108, 152
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	5 cut(s)	21, 75, 97, 153, 205
SexAI	ACCWGGT	1 cut(s)	150
SfaNI	GCATC	2 cut(s)	155, 269
Sse9I	AATT	2 cut(s)	124, 182
StyD4I	CCNGG	2 cut(s)	106, 150
StyI	CCWWGG	1 cut(s)	268
TaiI	ACGT	1 cut(s)	205
TasI	AATT	2 cut(s)	124, 182
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
Van91I	CCANNNNNTGG	1 cut(s)	253
XapI	RAATTY	2 cut(s)	124, 182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.