Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006492.1

Orthogroup ID

OG0031311

Physical Location & Seq

Genomic Coordinates Reverse (-)

86649 .. 88250

Gene Structure 1602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atggtgaagggtcgtcaaggagagcgcgtcagactctacgtccgtggaaccgtcctcggatacaagaggtcgaagtcgaaccagtacccaaacacgtccttgattcagatcgagaacgtgaacaccaaggaggaggtggcatggtacgccgggaagcgtttggcttacatttacaaggccaaggcctcatggaaacactggtgtcgttcgcgccaagttcacctccaatcttccacccaaatccatgggatccagagtcagggttttcatgtatcccagcaacatttgagggatgaggctaatgtagatgaccgattggatttggagtgcagcagctgcttttttgcttttatgtcgtttagattcaaactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L35Ae

Protein Analysis

124

Amino Acids

14.57

Weight (kDa)

9.86

Isoelectric Point (pI)

52.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L35Ae	PF01247	12 - 83	2.9e-20	Ribosomal protein L35Ae

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0031311)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004616.1_g000003 Rmu_sc0006492.1_g000017

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	27, 211
AclWI	GGATC	2 cut(s)	244, 257
AfaI	GTAC	2 cut(s)	86, 146
AfiI	CCNNNNNNNGG	1 cut(s)	259
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	367
AhdI	GACNNNNNGTC	1 cut(s)	38
AjiI	CACGTC	1 cut(s)	96
AluBI	AGCT	1 cut(s)	336
AluI	AGCT	1 cut(s)	336
AlwI	GGATC	2 cut(s)	244, 257
AlwNI	CAGNNNCTG	1 cut(s)	336
AoxI	GGCC	2 cut(s)	177, 183
ApeKI	GCWGC	3 cut(s)	330, 333, 336
AspLEI	GCGC	2 cut(s)	27, 213
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	2 cut(s)	16, 212
BamHI	GGATCC	1 cut(s)	249
BbvI	GCAGC	3 cut(s)	323, 342, 345
BciVI	GTATCC	2 cut(s)	53, 283
BcnI	CCSGG	1 cut(s)	151
BfuI	GTATCC	2 cut(s)	53, 283
BisI	GCNGC	3 cut(s)	331, 334, 337
BlsI	GCNGC	3 cut(s)	332, 335, 338
Bme1390I	CCNGG	1 cut(s)	151
BmeRI	GACNNNNNGTC	1 cut(s)	38
BmgBI	CACGTC	1 cut(s)	96
BmiI	GGNNCC	2 cut(s)	49, 251
BmrFI	CCNGG	1 cut(s)	151
BpuMI	CCSGG	1 cut(s)	151
BsaBI	GATNNNNATC	1 cut(s)	107
BsaJI	CCNNGG	5 cut(s)	43, 55, 126, 180, 244
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse1I	ACTGG	2 cut(s)	82, 203
Bse8I	GATNNNNATC	1 cut(s)	107
BseDI	CCNNGG	5 cut(s)	43, 55, 126, 180, 244
BseGI	GGATG	1 cut(s)	298
BseJI	GATNNNNATC	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseNI	ACTGG	2 cut(s)	82, 203
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	3 cut(s)	323, 342, 345
BseYI	CCCAGC	1 cut(s)	276
BsgI	GTGCAG	1 cut(s)	349
Bsh1236I	CGCG	2 cut(s)	27, 211
BshFI	GGCC	2 cut(s)	179, 185
BsiSI	CCGG	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	259
BsnI	GGCC	2 cut(s)	179, 185
Bsp143I	GATC	2 cut(s)	108, 249
Bsp19I	CCATGG	1 cut(s)	244
BspANI	GGCC	2 cut(s)	179, 185
BspFNI	CGCG	2 cut(s)	27, 211
BspLI	GGNNCC	2 cut(s)	49, 251
BspPI	GGATC	2 cut(s)	244, 257
BsrI	ACTGG	2 cut(s)	82, 203
BssECI	CCNNGG	5 cut(s)	43, 55, 126, 180, 244
BssMI	GATC	2 cut(s)	108, 249
BssT1I	CCWWGG	3 cut(s)	126, 180, 244
Bst4CI	ACNGT	1 cut(s)	52
BstAPI	GCANNNNNTGC	1 cut(s)	336
BstDSI	CCRYGG	2 cut(s)	43, 244
BstF5I	GGATG	1 cut(s)	298
BstFNI	CGCG	2 cut(s)	27, 211
BstHHI	GCGC	2 cut(s)	27, 213
BstKTI	GATC	2 cut(s)	111, 252
BstMBI	GATC	2 cut(s)	108, 249
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 336
BstSCI	CCNGG	1 cut(s)	149
BstUI	CGCG	2 cut(s)	27, 211
BstV1I	GCAGC	3 cut(s)	323, 342, 345
BstX2I	RGATCY	1 cut(s)	249
BstXI	CCANNNNNNTGG	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	249
BsuI	GTATCC	2 cut(s)	53, 283
BsuRI	GGCC	2 cut(s)	179, 185
BtgI	CCRYGG	2 cut(s)	43, 244
BtrI	CACGTC	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	196
CaiI	CAGNNNCTG	1 cut(s)	336
CfoI	GCGC	2 cut(s)	27, 213
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	85, 145
CviAII	CATG	4 cut(s)	141, 189, 245, 269
CviJI	RGCY	5 cut(s)	164, 179, 185, 299, 336
CviKI_1	RGCY	5 cut(s)	164, 179, 185, 299, 336
CviQI	GTAC	2 cut(s)	85, 145
DpnI	GATC	2 cut(s)	110, 251
DpnII	GATC	2 cut(s)	108, 249
DriI	GACNNNNNGTC	1 cut(s)	38
Eam1105I	GACNNNNNGTC	1 cut(s)	38
Eco130I	CCWWGG	3 cut(s)	126, 180, 244
Eco147I	AGGCCT	1 cut(s)	185
EcoT14I	CCWWGG	3 cut(s)	126, 180, 244
ErhI	CCWWGG	3 cut(s)	126, 180, 244
FaeI	CATG	4 cut(s)	144, 192, 248, 272
FaiI	YATR	5 cut(s)	142, 190, 246, 270, 353
FatI	CATG	4 cut(s)	140, 188, 244, 268
Fnu4HI	GCNGC	3 cut(s)	331, 334, 337
FokI	GGATG	1 cut(s)	305
Fsp4HI	GCNGC	3 cut(s)	331, 334, 337
GlaI	GCGC	2 cut(s)	26, 212
GluI	GCNGC	3 cut(s)	331, 334, 337
GsaI	CCCAGC	1 cut(s)	280
HaeIII	GGCC	2 cut(s)	179, 185
HapII	CCGG	1 cut(s)	150
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	2 cut(s)	27, 213
Hin1II	CATG	4 cut(s)	144, 192, 248, 272
Hin6I	GCGC	2 cut(s)	25, 211
HinP1I	GCGC	2 cut(s)	25, 211
HinfI	GANTC	4 cut(s)	33, 103, 256, 363
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	2 cut(s)	16, 212
Hpy166II	GTNNAC	2 cut(s)	121, 220
Hpy188I	TCNGA	3 cut(s)	32, 59, 108
Hpy188III	TCNNGA	2 cut(s)	112, 253
Hpy8I	GTNNAC	2 cut(s)	121, 220
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	3 cut(s)	39, 95, 117
HpyCH4V	TGCA	1 cut(s)	330
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 336
HpySE526I	ACGT	3 cut(s)	39, 95, 117
Hsp92II	CATG	4 cut(s)	144, 192, 248, 272
HspAI	GCGC	2 cut(s)	25, 211
Kzo9I	GATC	2 cut(s)	108, 249
LpnPI	CCDG	6 cut(s)	95, 163, 184, 245, 266, 290
Lsp1109I	GCAGC	3 cut(s)	323, 342, 345
MaeII	ACGT	3 cut(s)	39, 95, 117
MalI	GATC	2 cut(s)	110, 251
MboI	GATC	2 cut(s)	108, 249
MboII	GAAGA	1 cut(s)	222
MflI	RGATCY	1 cut(s)	249
MlyI	GAGTC	2 cut(s)	27, 265
MnlI	CCTC	8 cut(s)	60, 65, 124, 127, 196, 233, 282, 289
MspA1I	CMGCKG	1 cut(s)	336
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	151
MvnI	CGCG	2 cut(s)	27, 211
MwoI	GCNNNNNNNGC	2 cut(s)	146, 336
NciI	CCSGG	1 cut(s)	151
NcoI	CCATGG	1 cut(s)	244
NdeII	GATC	2 cut(s)	108, 249
NlaIII	CATG	4 cut(s)	144, 192, 248, 272
NlaIV	GGNNCC	2 cut(s)	49, 251
PceI	AGGCCT	1 cut(s)	185
PfeI	GAWTC	2 cut(s)	103, 363
PkrI	GCNGC	3 cut(s)	332, 335, 338
PleI	GAGTC	2 cut(s)	27, 264
PpsI	GAGTC	2 cut(s)	27, 264
PspFI	CCCAGC	1 cut(s)	276
PspN4I	GGNNCC	2 cut(s)	49, 251
PstNI	CAGNNNCTG	1 cut(s)	336
PsuI	RGATCY	1 cut(s)	249
PvuII	CAGCTG	1 cut(s)	336
RsaI	GTAC	2 cut(s)	86, 146
RsaNI	GTAC	2 cut(s)	85, 145
SatI	GCNGC	3 cut(s)	331, 334, 337
Sau3AI	GATC	2 cut(s)	108, 249
SchI	GAGTC	2 cut(s)	27, 265
ScrFI	CCNGG	1 cut(s)	151
SetI	ASST	7 cut(s)	42, 71, 98, 120, 138, 225, 338
SseBI	AGGCCT	1 cut(s)	185
StuI	AGGCCT	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	3 cut(s)	126, 180, 244
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	3 cut(s)	42, 98, 120
TaqI	TCGA	3 cut(s)	71, 77, 111
TaqII	GACCGA	1 cut(s)	327
TfiI	GAWTC	2 cut(s)	103, 363
TscAI	CASTG	1 cut(s)	203
TseI	GCWGC	3 cut(s)	330, 333, 336
TspDTI	ATGAA	1 cut(s)	257
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	203
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.