Rmu_sc0006492.1_g000018

Protein SSUH2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006492.1
N/A
Physical Location & Seq
Forward (+)
89661 .. 92224
2564 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1038 bp
atggagcagtctctgctttcggaagagcaacgaaatggatcagaggagaagtcgagtgagaactggagctcgtaccagtacgtggggagatccggctcagtgatcccgacggcttcgttggccggaactgaagtcagcgtcgaagagatacgatcagcggcggcttattctgagcactacccaccttctcttcatagcggtttggttagttcgccggagcctgatcttgatgagcaatctgttgtctaccaaggtggatatggaggaggtgctggcagcaccacaagtgagtttcataggcaaacactggatgaagtagagatacgggagttgctcattgatcatgttggccatagatgctgttggggaagtcgtcctgctcgcacctggaaaattcagagagtggaagattgcaacgtttatgtgggaacactagataccttcattgaagaaagggaaactgtaagagaaacagagccataccttggtggcagttttgatggaagggataagggacccgaactgggagtctgggaattggatttgaagtctcaatttcctgttttatttatacctcataaagaatcacgggagataattcctcattcagagtccattgcgaaatgctcaggttgtgcagggcgagggggtaccgtctgtcctaaatgcaatgcaaatcaagaacctggatcctacaaagagaaccagatggctcagtgctctgcttgtcatggaaggggcttacttgctcataaagatggatctgactcgatatgtgtgacttgcaatggcaagggacagattccttgtgcaacgtgtggatctcgtggtctagttaaatgtttgacatgtgaaggaagtggttctcttcggtcccgcaatgttgcccttgttagatggtatctattctcctgcttgattcattatatttctcggaaatttcttgcaacaccatttgaaatggtaaaactcaagtacaaatacatattacaaagaagtgggggattttgttccccattatccattgttctacgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

345

Amino Acids

37.97

Weight (kDa)

6.09

Isoelectric Point (pI)

55.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 650
AccB1I GGYRCC 1 cut(s) 650
AccB7I CCANNNNNTGG 2 cut(s) 82, 485
AccI GTMKAC 1 cut(s) 246
AciI CCGC 4 cut(s) 158, 161, 198, 877
AclI AACGTT 1 cut(s) 417
AclWI GGATC 7 cut(s) 46, 84, 97, 684, 697, 769, 829
AcoI YGGCCR 2 cut(s) 120, 349
AcsI RAATTY 2 cut(s) 393, 938
AcuI CTGAAG 1 cut(s) 150
AfaI GTAC 4 cut(s) 74, 80, 652, 977
AfiI CCNNNNNNNGG 3 cut(s) 82, 485, 524
AflIII ACRYGT 2 cut(s) 815, 848
AgsI TTSAA 3 cut(s) 449, 547, 959
AjnI CCWGG 2 cut(s) 386, 685
AluBI AGCT 1 cut(s) 69
AluI AGCT 1 cut(s) 69
Alw21I GWGCWC 3 cut(s) 71, 177, 722
Alw26I GTCTC 2 cut(s) 15, 555
AlwI GGATC 7 cut(s) 46, 84, 97, 684, 697, 769, 829
AlwNI CAGNNNCTG 1 cut(s) 13
AoxI GGCC 2 cut(s) 120, 349
ApeKI GCWGC 1 cut(s) 276
ApoI RAATTY 2 cut(s) 393, 938
ArsI GACNNNNNNTTYG 2 cut(s) 513, 545
Asp700I GAANNNNTTC 1 cut(s) 862
Asp718I GGTACC 1 cut(s) 650
AspS9I GGNCC 2 cut(s) 515, 873
AvaII GGWCC 2 cut(s) 515, 873
BaeI ACNNNNGTAYC 2 cut(s) 314, 347
BalI TGGCCA 1 cut(s) 351
BamHI GGATCC 1 cut(s) 689
BanI GGYRCC 1 cut(s) 650
BanII GRGCYC 1 cut(s) 71
BarI GAAGNNNNNNTAC 2 cut(s) 306, 338
BauI CACGAG 1 cut(s) 825
Bbv12I GWGCWC 3 cut(s) 71, 177, 722
BbvI GCAGC 1 cut(s) 288
BccI CCATC 4 cut(s) 494, 703, 752, 891
BceAI ACGGC 1 cut(s) 126
BciT130I CCWGG 2 cut(s) 388, 687
BclI TGATCA 1 cut(s) 340
BcoDI GTCTC 2 cut(s) 15, 555
BfaI CTAG 2 cut(s) 434, 833
BisI GCNGC 3 cut(s) 159, 162, 277
BlsI GCNGC 3 cut(s) 160, 163, 278
Bme1390I CCNGG 2 cut(s) 388, 687
Bme18I GGWCC 2 cut(s) 515, 873
BmgT120I GGNCC 2 cut(s) 515, 873
BmiI GGNNCC 6 cut(s) 219, 516, 517, 652, 691, 875
BmrFI CCNGG 2 cut(s) 388, 687
BmrI ACTGGG 1 cut(s) 533
BmsI GCATC 1 cut(s) 347
BmuI ACTGGG 1 cut(s) 533
BpmI CTGGAG 1 cut(s) 85
Bpu10I CCTNAGC 1 cut(s) 628
BpuEI CTTGAG 1 cut(s) 956
BsaAI YACGTR 1 cut(s) 82
BsaJI CCNNGG 2 cut(s) 250, 484
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 485, 524
Bse1I ACTGG 4 cut(s) 68, 76, 312, 528
Bse3DI GCAATG 4 cut(s) 615, 676, 793, 886
BseBI CCWGG 2 cut(s) 388, 687
BseDI CCNNGG 2 cut(s) 250, 484
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 3 cut(s) 82, 485, 524
BseMI GCAATG 4 cut(s) 615, 676, 793, 886
BseMII CTCAG 4 cut(s) 111, 162, 642, 728
BseNI ACTGG 4 cut(s) 68, 76, 312, 528
BseRI GAGGAG 2 cut(s) 59, 279
BseXI GCAGC 1 cut(s) 288
BsgI GTGCAG 1 cut(s) 657
BshFI GGCC 2 cut(s) 122, 351
BshNI GGYRCC 1 cut(s) 650
BsiHKAI GWGCWC 3 cut(s) 71, 177, 722
BsiSI CCGG 3 cut(s) 93, 123, 215
BslFI GGGAC 3 cut(s) 528, 810, 859
BslI CCNNNNNNNGG 3 cut(s) 82, 485, 524
BsmAI GTCTC 2 cut(s) 15, 555
BsmFI GGGAC 3 cut(s) 528, 810, 859
BsnI GGCC 2 cut(s) 122, 351
Bsp1286I GDGCHC 3 cut(s) 71, 177, 722
Bsp143I GATC 9 cut(s) 38, 89, 102, 152, 223, 340, 689, 761, 821
BspACI CCGC 4 cut(s) 158, 161, 198, 877
BspANI GGCC 2 cut(s) 122, 351
BspCNI CTCAG 4 cut(s) 110, 163, 641, 727
BspLI GGNNCC 6 cut(s) 219, 516, 517, 652, 691, 875
BspPI GGATC 7 cut(s) 46, 84, 97, 684, 697, 769, 829
BspQI GCTCTTC 1 cut(s) 18
BspT107I GGYRCC 1 cut(s) 650
BsrDI GCAATG 4 cut(s) 615, 676, 793, 886
BsrI ACTGG 4 cut(s) 68, 76, 312, 528
BssECI CCNNGG 2 cut(s) 250, 484
BssMI GATC 9 cut(s) 38, 89, 102, 152, 223, 340, 689, 761, 821
BssSI CACGAG 1 cut(s) 825
BssT1I CCWWGG 2 cut(s) 250, 484
Bst2BI CACGAG 1 cut(s) 825
Bst2UI CCWGG 2 cut(s) 388, 687
Bst4CI ACNGT 2 cut(s) 463, 655
Bst6I CTCTTC 4 cut(s) 18, 138, 195, 873
BstAPI GCANNNNNTGC 1 cut(s) 13
BstBAI YACGTR 1 cut(s) 82
BstC8I GCNNGC 2 cut(s) 274, 382
BstDEI CTNAG 4 cut(s) 97, 171, 628, 714
BstF5I GGATG 1 cut(s) 316
BstKTI GATC 9 cut(s) 41, 92, 105, 155, 226, 343, 692, 764, 824
BstMAI GTCTC 2 cut(s) 15, 555
BstMBI GATC 9 cut(s) 38, 89, 102, 152, 223, 340, 689, 761, 821
BstMWI GCNNNNNNNGC 3 cut(s) 13, 119, 357
BstNI CCWGG 2 cut(s) 388, 687
BstNSI RCATGY 1 cut(s) 852
BstSCI CCNGG 2 cut(s) 386, 685
BstV1I GCAGC 1 cut(s) 288
BstX2I RGATCY 4 cut(s) 89, 689, 761, 821
BstYI RGATCY 4 cut(s) 89, 689, 761, 821
BsuRI GGCC 2 cut(s) 122, 351
BtsCI GGATG 1 cut(s) 316
BtsIMutI CAGTG 3 cut(s) 105, 305, 722
Cac8I GCNNGC 2 cut(s) 274, 382
CaiI CAGNNNCTG 1 cut(s) 13
Cfr13I GGNCC 2 cut(s) 515, 873
CseI GACGC 1 cut(s) 127
Csp6I GTAC 4 cut(s) 73, 79, 651, 976
CviAII CATG 3 cut(s) 344, 731, 849
CviQI GTAC 4 cut(s) 73, 79, 651, 976
DdeI CTNAG 4 cut(s) 97, 171, 628, 714
DpnI GATC 9 cut(s) 40, 91, 104, 154, 225, 342, 691, 763, 823
DpnII GATC 9 cut(s) 38, 89, 102, 152, 223, 340, 689, 761, 821
EaeI YGGCCR 2 cut(s) 120, 349
Eam1104I CTCTTC 4 cut(s) 18, 138, 195, 873
EarI CTCTTC 4 cut(s) 18, 138, 195, 873
Ecl136II GAGCTC 1 cut(s) 69
Eco130I CCWWGG 2 cut(s) 250, 484
Eco24I GRGCYC 1 cut(s) 71
Eco47I GGWCC 2 cut(s) 515, 873
Eco53kI GAGCTC 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 150
EcoICRI GAGCTC 1 cut(s) 69
EcoO109I RGGNCCY 1 cut(s) 515
EcoRII CCWGG 2 cut(s) 386, 685
EcoT14I CCWWGG 2 cut(s) 250, 484
EcoT38I GRGCYC 1 cut(s) 71
ErhI CCWWGG 2 cut(s) 250, 484
FaeI CATG 3 cut(s) 347, 734, 852
FaqI GGGAC 3 cut(s) 528, 810, 859
FatI CATG 3 cut(s) 343, 730, 848
FauI CCCGC 1 cut(s) 884
FbaI TGATCA 1 cut(s) 340
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 3 cut(s) 159, 162, 277
FokI GGATG 1 cut(s) 323
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 3 cut(s) 159, 162, 277
FspBI CTAG 2 cut(s) 434, 833
GluI GCNGC 3 cut(s) 159, 162, 277
GsuI CTGGAG 1 cut(s) 85
HaeIII GGCC 2 cut(s) 122, 351
HapII CCGG 3 cut(s) 93, 123, 215
HgaI GACGC 1 cut(s) 127
Hin1II CATG 3 cut(s) 347, 734, 852
HinfI GANTC 6 cut(s) 528, 584, 611, 767, 802, 919
HpaII CCGG 3 cut(s) 93, 123, 215
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 7 cut(s) 22, 43, 172, 399, 610, 766, 936
Hpy188III TCNNGA 3 cut(s) 106, 227, 680
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 2 cut(s) 112, 143
HpyAV CCTTC 5 cut(s) 195, 451, 498, 729, 848
HpyCH4III ACNGT 2 cut(s) 463, 655
HpyCH4IV ACGT 4 cut(s) 81, 417, 815, 1033
HpyCH4V TGCA 7 cut(s) 414, 638, 669, 674, 786, 812, 947
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 119, 357
HpyF3I CTNAG 4 cut(s) 97, 171, 628, 714
HpySE526I ACGT 4 cut(s) 81, 417, 815, 1033
Hsp92II CATG 3 cut(s) 347, 734, 852
KflI GGGWCCC 1 cut(s) 515
KpnI GGTACC 1 cut(s) 654
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 9 cut(s) 38, 89, 102, 152, 223, 340, 689, 761, 821
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 3 cut(s) 4, 66, 217
Lsp1109I GCAGC 1 cut(s) 288
LweI GCATC 1 cut(s) 347
MaeI CTAG 2 cut(s) 434, 833
MaeII ACGT 4 cut(s) 81, 417, 815, 1033
MaeIII GTNAC 1 cut(s) 778
MalI GATC 9 cut(s) 40, 91, 104, 154, 225, 342, 691, 763, 823
MboI GATC 9 cut(s) 38, 89, 102, 152, 223, 340, 689, 761, 821
MboII GAAGA 6 cut(s) 35, 155, 182, 419, 461, 860
MflI RGATCY 4 cut(s) 89, 689, 761, 821
MhlI GDGCHC 3 cut(s) 71, 177, 722
MlsI TGGCCA 1 cut(s) 351
MluCI AATT 5 cut(s) 393, 536, 554, 597, 938
MluNI TGGCCA 1 cut(s) 351
MlyI GAGTC 3 cut(s) 537, 620, 761
MnlI CCTC 6 cut(s) 37, 257, 260, 585, 612, 638
Mox20I TGGCCA 1 cut(s) 351
MroXI GAANNNNTTC 1 cut(s) 862
MscI TGGCCA 1 cut(s) 351
MseI TTAA 1 cut(s) 837
MslI CAYNNNNRTG 1 cut(s) 756
Msp20I TGGCCA 1 cut(s) 351
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 3 cut(s) 93, 123, 215
MspR9I CCNGG 2 cut(s) 388, 687
MvaI CCWGG 2 cut(s) 388, 687
MwoI GCNNNNNNNGC 3 cut(s) 13, 119, 357
NdeII GATC 9 cut(s) 38, 89, 102, 152, 223, 340, 689, 761, 821
NlaIII CATG 3 cut(s) 347, 734, 852
NlaIV GGNNCC 6 cut(s) 219, 516, 517, 652, 691, 875
NmuCI GTSAC 1 cut(s) 778
NspI RCATGY 1 cut(s) 852
PciI ACATGT 1 cut(s) 848
PciSI GCTCTTC 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 862
PfeI GAWTC 3 cut(s) 584, 802, 919
PflMI CCANNNNNTGG 2 cut(s) 82, 485
PkrI GCNGC 3 cut(s) 160, 163, 278
PleI GAGTC 3 cut(s) 536, 619, 761
PpsI GAGTC 3 cut(s) 536, 619, 761
Ppu21I YACGTR 1 cut(s) 82
PpuMI RGGWCCY 1 cut(s) 515
PscI ACATGT 1 cut(s) 848
Psp124BI GAGCTC 1 cut(s) 71
Psp1406I AACGTT 1 cut(s) 417
Psp5II RGGWCCY 1 cut(s) 515
Psp6I CCWGG 2 cut(s) 386, 685
PspGI CCWGG 2 cut(s) 386, 685
PspN4I GGNNCC 6 cut(s) 219, 516, 517, 652, 691, 875
PspPI GGNCC 2 cut(s) 515, 873
PspPPI RGGWCCY 1 cut(s) 515
PsrI GAACNNNNNNTAC 2 cut(s) 421, 453
PstNI CAGNNNCTG 1 cut(s) 13
PsuI RGATCY 4 cut(s) 89, 689, 761, 821
RsaI GTAC 4 cut(s) 74, 80, 652, 977
RsaNI GTAC 4 cut(s) 73, 79, 651, 976
RseI CAYNNNNRTG 1 cut(s) 756
SacI GAGCTC 1 cut(s) 71
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 1 cut(s) 837
SatI GCNGC 3 cut(s) 159, 162, 277
Sau3AI GATC 9 cut(s) 38, 89, 102, 152, 223, 340, 689, 761, 821
Sau96I GGNCC 2 cut(s) 515, 873
SchI GAGTC 3 cut(s) 537, 620, 761
ScrFI CCNGG 2 cut(s) 388, 687
SduI GDGCHC 3 cut(s) 71, 177, 722
SfaNI GCATC 1 cut(s) 347
SinI GGWCC 2 cut(s) 515, 873
SmiMI CAYNNNNRTG 1 cut(s) 756
SmlI CTYRAG 1 cut(s) 971
SmoI CTYRAG 1 cut(s) 971
Sse9I AATT 5 cut(s) 393, 536, 554, 597, 938
SsiI CCGC 4 cut(s) 158, 161, 198, 877
SspMI CTAG 2 cut(s) 434, 833
SstI GAGCTC 1 cut(s) 71
StyD4I CCNGG 2 cut(s) 386, 685
StyI CCWWGG 2 cut(s) 250, 484
TaaI ACNGT 2 cut(s) 463, 655
TaiI ACGT 4 cut(s) 84, 420, 818, 1036
TaqI TCGA 3 cut(s) 53, 141, 770
TaqII GACCGA 1 cut(s) 861
TasI AATT 5 cut(s) 393, 536, 554, 597, 938
TatI WGTACW 1 cut(s) 975
TauI GCSGC 2 cut(s) 161, 164
TfiI GAWTC 3 cut(s) 584, 802, 919
Tru1I TTAA 1 cut(s) 837
Tru9I TTAA 1 cut(s) 837
TscAI CASTG 3 cut(s) 105, 312, 722
TseFI GTSAC 1 cut(s) 778
TseI GCWGC 1 cut(s) 276
Tsp45I GTSAC 1 cut(s) 778
TspDTI ATGAA 5 cut(s) 182, 284, 327, 433, 911
TspRI CASTG 3 cut(s) 105, 312, 722
Van91I CCANNNNNTGG 2 cut(s) 82, 485
VpaK11BI GGWCC 2 cut(s) 515, 873
XapI RAATTY 2 cut(s) 393, 938
XceI RCATGY 1 cut(s) 852
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XmiI GTMKAC 1 cut(s) 246
XmnI GAANNNNTTC 1 cut(s) 862
XspI CTAG 2 cut(s) 434, 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.