Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006493.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

67056 .. 68647

Gene Structure 1592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgataaatgcccaggccgcccagagcaaacacatcgccacaaatgttgtggctattcgcaacgactggtccaatcttacgacccagtttgccatgcagaaagctgagttggacaagactaaagagatgctgaatagaacgttgggagattccaatgctatcctagccgctactgccgcatcagccagaaccaaggagaaagccttgcgtttgtgggccaaagcgggcgtggggctcgcactagtcgcggagcctgcacaagttgcggaggttataccccatccccagggaagcgtgggcatagagctcgtaactgatgtcgtcttccacgagctggatatccgagcaaaagatcgagcggcgaaaggccaagcgtgcgcgatcgctatattcaaggtccccaagaaggaacccttgttggatgggaggcgggaatcttctactaagaacctagtccgagtctggaaatttgtccaggaggtttggcgaacaagaagacaattgagtattcaggctagaggcaaggaccagtctgtggtgctcaccaccactaagaccaggaagcagaacaagccaaccagtttggttcacaagtctgtgatgaggaaggattttcgtcgcatggccaaggttgttaccaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

214

Amino Acids

23.79

Weight (kDa)

10.56

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	334, 535
AccBSI	CCGCTC	1 cut(s)	359
AccII	CGCG	2 cut(s)	248, 380
AciI	CCGC	8 cut(s)	18, 168, 177, 224, 248, 266, 359, 430
AclI	AACGTT	1 cut(s)	140
AcoI	YGGCCR	1 cut(s)	624
AcsI	RAATTY	1 cut(s)	467
AfiI	CCNNNNNNNGG	4 cut(s)	286, 334, 406, 535
AgsI	TTSAA	1 cut(s)	394
AhlI	ACTAGT	1 cut(s)	241
AjnI	CCWGG	4 cut(s)	12, 285, 474, 557
AjuI	GAANNNNNNNTTGG	4 cut(s)	92, 124, 125, 157
AluBI	AGCT	3 cut(s)	104, 307, 334
AluI	AGCT	3 cut(s)	104, 307, 334
Alw21I	GWGCWC	2 cut(s)	309, 543
AoxI	GGCC	4 cut(s)	15, 216, 367, 624
ApoI	RAATTY	1 cut(s)	467
AsiSI	GCGATCGC	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	380
AspS9I	GGNCC	4 cut(s)	69, 216, 397, 526
AsuHPI	GGTGA	1 cut(s)	535
AvaII	GGWCC	3 cut(s)	69, 397, 526
BalI	TGGCCA	1 cut(s)	626
BanII	GRGCYC	2 cut(s)	237, 309
BauI	CACGAG	1 cut(s)	329
BbsI	GAAGAC	2 cut(s)	316, 502
Bbv12I	GWGCWC	2 cut(s)	309, 543
BccI	CCATC	2 cut(s)	288, 416
BcgI	CGANNNNNNTGC	4 cut(s)	16, 50, 289, 323
BciT130I	CCWGG	4 cut(s)	14, 287, 476, 559
BcuI	ACTAGT	1 cut(s)	241
BfaI	CTAG	5 cut(s)	164, 242, 452, 516, 643
BisI	GCNGC	4 cut(s)	18, 168, 177, 360
BlsI	GCNGC	4 cut(s)	19, 169, 178, 361
Bme1390I	CCNGG	4 cut(s)	14, 287, 476, 559
Bme18I	GGWCC	3 cut(s)	69, 397, 526
BmgT120I	GGNCC	4 cut(s)	69, 216, 397, 526
BmiI	GGNNCC	3 cut(s)	252, 399, 411
BmrFI	CCNGG	4 cut(s)	14, 287, 476, 559
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	2 cut(s)	117, 188
BmuI	ACTGGG	1 cut(s)	79
BpiI	GAAGAC	2 cut(s)	316, 502
BsaJI	CCNNGG	5 cut(s)	12, 192, 285, 286, 627
Bsc4I	CCNNNNNNNGG	4 cut(s)	286, 334, 406, 535
Bse1I	ACTGG	4 cut(s)	71, 85, 529, 579
BseBI	CCWGG	4 cut(s)	14, 287, 476, 559
BseDI	CCNNGG	5 cut(s)	12, 192, 285, 286, 627
BseGI	GGATG	2 cut(s)	280, 427
BseLI	CCNNNNNNNGG	4 cut(s)	286, 334, 406, 535
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	4 cut(s)	71, 85, 529, 579
BsgI	GTGCAG	1 cut(s)	240
Bsh1236I	CGCG	2 cut(s)	248, 380
Bsh1285I	CGRYCG	1 cut(s)	384
BshFI	GGCC	4 cut(s)	17, 218, 369, 626
BsiEI	CGRYCG	1 cut(s)	384
BsiHKAI	GWGCWC	2 cut(s)	309, 543
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	4 cut(s)	286, 334, 406, 535
BsmFI	GGGAC	1 cut(s)	383
BsnI	GGCC	4 cut(s)	17, 218, 369, 626
Bsp1286I	GDGCHC	3 cut(s)	237, 309, 543
Bsp143I	GATC	2 cut(s)	352, 381
BspACI	CCGC	8 cut(s)	18, 168, 177, 224, 248, 266, 359, 430
BspANI	GGCC	4 cut(s)	17, 218, 369, 626
BspCNI	CTCAG	1 cut(s)	97
BspFNI	CGCG	2 cut(s)	248, 380
BspLI	GGNNCC	3 cut(s)	252, 399, 411
BsrBI	CCGCTC	1 cut(s)	359
BsrI	ACTGG	4 cut(s)	71, 85, 529, 579
BssECI	CCNNGG	5 cut(s)	12, 192, 285, 286, 627
BssMI	GATC	2 cut(s)	352, 381
BssSI	CACGAG	1 cut(s)	329
BssT1I	CCWWGG	2 cut(s)	192, 627
Bst2BI	CACGAG	1 cut(s)	329
Bst2UI	CCWGG	4 cut(s)	14, 287, 476, 559
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstC8I	GCNNGC	4 cut(s)	226, 237, 255, 376
BstDEI	CTNAG	3 cut(s)	105, 444, 552
BstF5I	GGATG	2 cut(s)	280, 427
BstFNI	CGCG	2 cut(s)	248, 380
BstHHI	GCGC	1 cut(s)	380
BstKTI	GATC	2 cut(s)	355, 384
BstMBI	GATC	2 cut(s)	352, 381
BstMCI	CGRYCG	1 cut(s)	384
BstNI	CCWGG	4 cut(s)	14, 287, 476, 559
BstSCI	CCNGG	4 cut(s)	12, 285, 474, 557
BstUI	CGCG	2 cut(s)	248, 380
BstV2I	GAAGAC	2 cut(s)	316, 502
BsuRI	GGCC	4 cut(s)	17, 218, 369, 626
BtgZI	GCGATG	1 cut(s)	19
BtsCI	GGATG	2 cut(s)	280, 427
Cac8I	GCNNGC	4 cut(s)	226, 237, 255, 376
CfoI	GCGC	1 cut(s)	380
Cfr13I	GGNCC	4 cut(s)	69, 216, 397, 526
CspCI	CAANNNNNGTGG	4 cut(s)	28, 30, 63, 65
CviAII	CATG	2 cut(s)	94, 622
DdeI	CTNAG	3 cut(s)	105, 444, 552
DpnI	GATC	2 cut(s)	354, 383
DpnII	GATC	2 cut(s)	352, 381
EaeI	YGGCCR	1 cut(s)	624
Ecl136II	GAGCTC	1 cut(s)	307
Eco130I	CCWWGG	2 cut(s)	192, 627
Eco24I	GRGCYC	2 cut(s)	237, 309
Eco32I	GATATC	1 cut(s)	340
Eco47I	GGWCC	3 cut(s)	69, 397, 526
Eco53kI	GAGCTC	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	307
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRII	CCWGG	4 cut(s)	12, 285, 474, 557
EcoRV	GATATC	1 cut(s)	340
EcoT14I	CCWWGG	2 cut(s)	192, 627
EcoT38I	GRGCYC	2 cut(s)	237, 309
ErhI	CCWWGG	2 cut(s)	192, 627
FaeI	CATG	2 cut(s)	97, 625
FaiI	YATR	5 cut(s)	95, 275, 302, 389, 623
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	2 cut(s)	93, 621
FauI	CCCGC	2 cut(s)	217, 423
Fnu4HI	GCNGC	4 cut(s)	18, 168, 177, 360
FokI	GGATG	2 cut(s)	267, 434
FriOI	GRGCYC	2 cut(s)	237, 309
Fsp4HI	GCNGC	4 cut(s)	18, 168, 177, 360
FspBI	CTAG	5 cut(s)	164, 242, 452, 516, 643
GlaI	GCGC	1 cut(s)	379
GluI	GCNGC	4 cut(s)	18, 168, 177, 360
HaeIII	GGCC	4 cut(s)	17, 218, 369, 626
HhaI	GCGC	1 cut(s)	380
Hin1II	CATG	2 cut(s)	97, 625
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HinfI	GANTC	3 cut(s)	149, 434, 459
HphI	GGTGA	1 cut(s)	535
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	2 cut(s)	344, 458
Hpy188III	TCNNGA	1 cut(s)	463
Hpy8I	GTNNAC	1 cut(s)	589
Hpy99I	CGWCG	1 cut(s)	621
HpyAV	CCTTC	2 cut(s)	400, 601
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	2 cut(s)	97, 257
HpyF3I	CTNAG	3 cut(s)	105, 444, 552
HpySE526I	ACGT	1 cut(s)	140
Hsp92II	CATG	2 cut(s)	97, 625
HspAI	GCGC	1 cut(s)	378
Kzo9I	GATC	2 cut(s)	352, 381
LmnI	GCTCC	1 cut(s)	250
LweI	GCATC	2 cut(s)	117, 188
MaeI	CTAG	5 cut(s)	164, 242, 452, 516, 643
MaeII	ACGT	1 cut(s)	140
MaeIII	GTNAC	2 cut(s)	310, 634
MalI	GATC	2 cut(s)	354, 383
MbiI	CCGCTC	1 cut(s)	359
MboI	GATC	2 cut(s)	352, 381
MboII	GAAGA	3 cut(s)	316, 429, 507
MfeI	CAATTG	1 cut(s)	500
MhlI	GDGCHC	3 cut(s)	237, 309, 543
MlsI	TGGCCA	1 cut(s)	626
MluCI	AATT	2 cut(s)	467, 500
MluNI	TGGCCA	1 cut(s)	626
MlyI	GAGTC	1 cut(s)	468
MmeI	TCCRAC	2 cut(s)	90, 399
MnlI	CCTC	5 cut(s)	262, 420, 472, 512, 597
Mox20I	TGGCCA	1 cut(s)	626
MscI	TGGCCA	1 cut(s)	626
Msp20I	TGGCCA	1 cut(s)	626
MspR9I	CCNGG	4 cut(s)	14, 287, 476, 559
MunI	CAATTG	1 cut(s)	500
MvaI	CCWGG	4 cut(s)	14, 287, 476, 559
MvnI	CGCG	2 cut(s)	248, 380
NdeII	GATC	2 cut(s)	352, 381
NlaIII	CATG	2 cut(s)	97, 625
NlaIV	GGNNCC	3 cut(s)	252, 399, 411
PasI	CCCWGGG	1 cut(s)	286
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PfeI	GAWTC	2 cut(s)	149, 434
PflMI	CCANNNNNTGG	2 cut(s)	334, 535
PfoI	TCCNGGA	1 cut(s)	474
PkrI	GCNGC	4 cut(s)	19, 169, 178, 361
Ple19I	CGATCG	1 cut(s)	384
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
PpuMI	RGGWCCY	1 cut(s)	397
Psp124BI	GAGCTC	1 cut(s)	309
Psp1406I	AACGTT	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	397
Psp6I	CCWGG	4 cut(s)	12, 285, 474, 557
PspGI	CCWGG	4 cut(s)	12, 285, 474, 557
PspN4I	GGNNCC	3 cut(s)	252, 399, 411
PspPI	GGNCC	4 cut(s)	69, 216, 397, 526
PspPPI	RGGWCCY	1 cut(s)	397
PvuI	CGATCG	1 cut(s)	384
RgaI	GCGATCGC	1 cut(s)	384
SacI	GAGCTC	1 cut(s)	309
SatI	GCNGC	4 cut(s)	18, 168, 177, 360
Sau3AI	GATC	2 cut(s)	352, 381
Sau96I	GGNCC	4 cut(s)	69, 216, 397, 526
SchI	GAGTC	1 cut(s)	468
ScrFI	CCNGG	4 cut(s)	14, 287, 476, 559
SduI	GDGCHC	3 cut(s)	237, 309, 543
SetI	ASST	9 cut(s)	106, 143, 273, 309, 336, 399, 453, 483, 633
SfaAI	GCGATCGC	1 cut(s)	384
SfaNI	GCATC	2 cut(s)	117, 188
SgfI	GCGATCGC	1 cut(s)	384
SinI	GGWCC	3 cut(s)	69, 397, 526
SpeI	ACTAGT	1 cut(s)	241
Sse9I	AATT	2 cut(s)	467, 500
SsiI	CCGC	8 cut(s)	18, 168, 177, 224, 248, 266, 359, 430
SspMI	CTAG	5 cut(s)	164, 242, 452, 516, 643
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	4 cut(s)	12, 285, 474, 557
StyI	CCWWGG	2 cut(s)	192, 627
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	1 cut(s)	355
TasI	AATT	2 cut(s)	467, 500
TauI	GCSGC	4 cut(s)	20, 170, 179, 362
TfiI	GAWTC	2 cut(s)	149, 434
Van91I	CCANNNNNTGG	2 cut(s)	334, 535
VpaK11BI	GGWCC	3 cut(s)	69, 397, 526
XapI	RAATTY	1 cut(s)	467
XcmI	CCANNNNNNNNNTGG	2 cut(s)	46, 226
XspI	CTAG	5 cut(s)	164, 242, 452, 516, 643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.