Rmu_sc0006514.1_g000034

Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006514.1
N/A
Physical Location & Seq
Reverse (-)
170259 .. 171425
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 561 bp
atggaggaggtttcaatggtggcgctctctggatgtatttggttgcaggcttttgtaatgacattagagacgaactcctttactatattgcaacatcttgctatatgggggaatttagctgccttctacatcatcaactggatcttcagtgccattccaggatcagggatgtatacaattatgtttcgcttgtgtagagagccttcttactggataacaatcttgctcatagttgcagcaggaatgggcccgattctagcgttgaagtacttcaggtatacatacagaccaagcaaaatcaatacactacagcaggctgaacgtttgggtgggcctatcctgtctattgggagcattgagccacaaacaagaggcgtagaaaaggaagtttctccattatcaattactcaacccaagaacagaaatccgattttcgaacctctattatcagattcacccaatgctacacgaagatcttttggttcaggaacgccttttgatttctttcaatcacagtccagattgtccatgtctaactactcaagaaacaaggacaactga

Protein Analysis

186

Amino Acids

20.97

Weight (kDa)

9.23

Isoelectric Point (pI)

53.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PhoLip_ATPase_C PF16212 2 - 98 2.3e-14 Phospholipid-translocating P-type ATPase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 173, 278
AclI AACGTT 1 cut(s) 322
AclWI GGATC 2 cut(s) 149, 169
AcsI RAATTY 1 cut(s) 112
AcuI CTGAAG 2 cut(s) 130, 256
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 164
AgsI TTSAA 3 cut(s) 15, 265, 509
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 2 cut(s) 149, 169
AoxI GGCC 2 cut(s) 247, 332
ApaI GGGCCC 1 cut(s) 251
ApeKI GCWGC 2 cut(s) 119, 236
ApoI RAATTY 1 cut(s) 112
Asp700I GAANNNNTTC 1 cut(s) 269
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 3 cut(s) 247, 248, 332
AsuHPI GGTGA 1 cut(s) 447
AsuII TTCGAA 1 cut(s) 435
BaeGI GKGCMC 1 cut(s) 251
BanII GRGCYC 1 cut(s) 251
BarI GAAGNNNNNNTAC 2 cut(s) 187, 219
BbvI GCAGC 2 cut(s) 106, 248
BciT130I CCWGG 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 62
BfaI CTAG 1 cut(s) 257
BfmI CTRYAG 1 cut(s) 308
BfoI RGCGCY 1 cut(s) 26
BglII AGATCT 1 cut(s) 473
BisI GCNGC 2 cut(s) 120, 237
BlsI GCNGC 2 cut(s) 121, 238
BmcAI AGTACT 1 cut(s) 269
Bme1390I CCNGG 1 cut(s) 159
BmgT120I GGNCC 3 cut(s) 247, 248, 332
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 159
BplI GAGNNNNNCTC 2 cut(s) 59, 91
Bpu14I TTCGAA 1 cut(s) 435
BpuEI CTTGAG 1 cut(s) 526
BsaBI GATNNNNATC 1 cut(s) 218
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse1I ACTGG 2 cut(s) 143, 215
Bse8I GATNNNNATC 1 cut(s) 218
BseBI CCWGG 1 cut(s) 159
BseGI GGATG 2 cut(s) 38, 174
BseJI GATNNNNATC 1 cut(s) 218
BseLI CCNNNNNNNGG 1 cut(s) 164
BseNI ACTGG 2 cut(s) 143, 215
BseRI GAGGAG 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 251
BseXI GCAGC 2 cut(s) 106, 248
BshFI GGCC 2 cut(s) 249, 334
BslI CCNNNNNNNGG 1 cut(s) 164
BsmAI GTCTC 1 cut(s) 62
BsmBI CGTCTC 1 cut(s) 62
BsnI GGCC 2 cut(s) 249, 334
Bsp119I TTCGAA 1 cut(s) 435
Bsp120I GGGCCC 1 cut(s) 247
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 3 cut(s) 141, 161, 473
BspANI GGCC 2 cut(s) 249, 334
BspLI GGNNCC 1 cut(s) 249
BspPI GGATC 2 cut(s) 149, 169
BspT104I TTCGAA 1 cut(s) 435
BsrI ACTGG 2 cut(s) 143, 215
BssMI GATC 3 cut(s) 141, 161, 473
BssNAI GTATAC 2 cut(s) 174, 279
Bst1107I GTATAC 2 cut(s) 174, 279
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 516
BstBI TTCGAA 1 cut(s) 435
BstC8I GCNNGC 2 cut(s) 48, 315
BstF5I GGATG 2 cut(s) 38, 174
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 3 cut(s) 144, 164, 476
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 3 cut(s) 141, 161, 473
BstNI CCWGG 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 157
BstSFI CTRYAG 1 cut(s) 308
BstSLI GKGCMC 1 cut(s) 251
BstV1I GCAGC 2 cut(s) 106, 248
BstX2I RGATCY 2 cut(s) 141, 473
BstYI RGATCY 2 cut(s) 141, 473
BstZ17I GTATAC 2 cut(s) 174, 279
BsuRI GGCC 2 cut(s) 249, 334
BtsCI GGATG 2 cut(s) 38, 174
BtsIMutI CAGTG 1 cut(s) 154
Cac8I GCNNGC 2 cut(s) 48, 315
CfoI GCGC 1 cut(s) 25
Cfr13I GGNCC 3 cut(s) 247, 248, 332
Csp6I GTAC 1 cut(s) 268
CviAII CATG 1 cut(s) 529
CviJI RGCY 7 cut(s) 50, 119, 202, 249, 317, 334, 361
CviKI_1 RGCY 7 cut(s) 50, 119, 202, 249, 317, 334, 361
CviQI GTAC 1 cut(s) 268
DpnI GATC 3 cut(s) 143, 163, 475
DpnII GATC 3 cut(s) 141, 161, 473
Eco24I GRGCYC 1 cut(s) 251
Eco57I CTGAAG 2 cut(s) 130, 256
EcoRII CCWGG 1 cut(s) 157
EcoT38I GRGCYC 1 cut(s) 251
Esp3I CGTCTC 1 cut(s) 62
FaeI CATG 1 cut(s) 532
FaiI YATR 9 cut(s) 86, 104, 106, 174, 182, 230, 279, 283, 530
FatI CATG 1 cut(s) 528
FblI GTMKAC 2 cut(s) 173, 278
Fnu4HI GCNGC 2 cut(s) 120, 237
FokI GGATG 2 cut(s) 45, 181
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 2 cut(s) 120, 237
FspBI CTAG 1 cut(s) 257
GlaI GCGC 1 cut(s) 24
GluI GCNGC 2 cut(s) 120, 237
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 2 cut(s) 249, 334
HhaI GCGC 1 cut(s) 25
Hin1II CATG 1 cut(s) 532
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HinfI GANTC 2 cut(s) 253, 452
HphI GGTGA 1 cut(s) 447
Hpy166II GTNNAC 2 cut(s) 174, 279
Hpy188I TCNGA 2 cut(s) 429, 451
Hpy188III TCNNGA 4 cut(s) 30, 486, 519, 543
Hpy8I GTNNAC 2 cut(s) 174, 279
HpyAV CCTTC 2 cut(s) 133, 213
HpyCH4III ACNGT 1 cut(s) 516
HpyCH4IV ACGT 1 cut(s) 322
HpyCH4V TGCA 3 cut(s) 46, 91, 236
HpySE526I ACGT 1 cut(s) 322
Hsp92II CATG 1 cut(s) 532
HspAI GCGC 1 cut(s) 23
Kzo9I GATC 3 cut(s) 141, 161, 473
LmnI GCTCC 1 cut(s) 351
Lsp1109I GCAGC 2 cut(s) 106, 248
MaeI CTAG 1 cut(s) 257
MaeII ACGT 1 cut(s) 322
MalI GATC 3 cut(s) 143, 163, 475
MboI GATC 3 cut(s) 141, 161, 473
MboII GAAGA 2 cut(s) 136, 483
MflI RGATCY 2 cut(s) 141, 473
MhlI GDGCHC 1 cut(s) 251
MluCI AATT 3 cut(s) 112, 177, 402
MnlI CCTC 2 cut(s) 365, 450
MroXI GAANNNNTTC 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 159
MvaI CCWGG 1 cut(s) 159
NdeII GATC 3 cut(s) 141, 161, 473
NlaIII CATG 1 cut(s) 532
NlaIV GGNNCC 1 cut(s) 249
NspV TTCGAA 1 cut(s) 435
PdmI GAANNNNTTC 1 cut(s) 269
PfeI GAWTC 2 cut(s) 253, 452
PfoI TCCNGGA 1 cut(s) 157
PkrI GCNGC 2 cut(s) 121, 238
Psp1406I AACGTT 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 249
PspOMI GGGCCC 1 cut(s) 247
PspPI GGNCC 3 cut(s) 247, 248, 332
PsuI RGATCY 2 cut(s) 141, 473
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SatI GCNGC 2 cut(s) 120, 237
Sau3AI GATC 3 cut(s) 141, 161, 473
Sau96I GGNCC 3 cut(s) 247, 248, 332
ScaI AGTACT 1 cut(s) 269
ScrFI CCNGG 1 cut(s) 159
SduI GDGCHC 1 cut(s) 251
SetI ASST 5 cut(s) 12, 121, 278, 325, 442
SfcI CTRYAG 1 cut(s) 308
SfuI TTCGAA 1 cut(s) 435
SmlI CTYRAG 1 cut(s) 541
SmoI CTYRAG 1 cut(s) 541
Sse9I AATT 3 cut(s) 112, 177, 402
SspMI CTAG 1 cut(s) 257
StyD4I CCNGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 516
TaiI ACGT 1 cut(s) 325
TaqI TCGA 1 cut(s) 435
TasI AATT 3 cut(s) 112, 177, 402
TatI WGTACW 1 cut(s) 267
TfiI GAWTC 2 cut(s) 253, 452
TscAI CASTG 1 cut(s) 154
TseI GCWGC 2 cut(s) 119, 236
TspRI CASTG 1 cut(s) 154
XapI RAATTY 1 cut(s) 112
XmiI GTMKAC 2 cut(s) 173, 278
XmnI GAANNNNTTC 1 cut(s) 269
XspI CTAG 1 cut(s) 257
ZrmI AGTACT 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.