Rmu_sc0006536.1_g000002

RNA-binding protein NOB1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006536.1
N/A
Physical Location & Seq
Reverse (-)
1338 .. 1931
594 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 519 bp
atgcctgccgtcagtcggagtacacatagaagttttttgagaaggaaagctagacgtgagtcttatgaggcattggctgataatgattctcagcaagacgctaaggaaaaaaccggtggtgacagtgaggtgacagaagagaagaattgtgatgaagatctttcctcaatcattgagcaaacaaggcgcgatgaagattcactaaaggctcttcaaaaatggaaggagcggaatggggttgaggataatgatttcaaagcagaggaaagcacttctgataatggtgtgaattttgctgttgagggagatgaggttaaagtgataaatgaaggtctggatcacttagagatctcaagtaataatgatggcagtgttgatacatcaaatgttaacgatgatagcagtgagcagggctggatgctgcgatccttgtctgagtctaatgtagcttgtataacaagtgactttgcaatgcaaaatgttattctgcaaatgggtttatggttgttggcaccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
NOB1_Zn_bind PIN_6

Protein Analysis

172

Amino Acids

19.22

Weight (kDa)

4.38

Isoelectric Point (pI)

72.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 511
AccBSI CCGCTC 1 cut(s) 229
AccII CGCG 1 cut(s) 189
AciI CCGC 1 cut(s) 229
AclWI GGATC 2 cut(s) 345, 420
AcsI RAATTY 1 cut(s) 289
AfaI GTAC 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 15
AgeI ACCGGT 1 cut(s) 113
AgsI TTSAA 2 cut(s) 215, 256
AjiI CACGTC 1 cut(s) 56
AluBI AGCT 2 cut(s) 50, 449
AluI AGCT 2 cut(s) 50, 449
AlwI GGATC 2 cut(s) 345, 420
ApeKI GCWGC 1 cut(s) 421
ApoI RAATTY 1 cut(s) 289
AsiGI ACCGGT 1 cut(s) 113
AspLEI GCGC 1 cut(s) 189
AsuHPI GGTGA 2 cut(s) 131, 142
BanI GGYRCC 1 cut(s) 511
BbvI GCAGC 1 cut(s) 408
BccI CCATC 1 cut(s) 359
BfaI CTAG 1 cut(s) 51
BglII AGATCT 2 cut(s) 157, 348
BisI GCNGC 1 cut(s) 422
BlsI GCNGC 1 cut(s) 423
BmgBI CACGTC 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 513
BmsI GCATC 1 cut(s) 408
BoxI GACNNNNGTC 1 cut(s) 58
Bpu10I CCTNAGC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 337
BsaBI GATNNNNATC 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 113
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse118I RCCGGY 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 477
Bse8I GATNNNNATC 1 cut(s) 156
BseGI GGATG 1 cut(s) 423
BseJI GATNNNNATC 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMI GCAATG 1 cut(s) 477
BseMII CTCAG 2 cut(s) 104, 426
BseXI GCAGC 1 cut(s) 408
Bsh1236I CGCG 1 cut(s) 189
BshNI GGYRCC 1 cut(s) 511
BshTI ACCGGT 1 cut(s) 113
BsiSI CCGG 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 15
Bsp143I GATC 4 cut(s) 157, 337, 348, 425
BspACI CCGC 1 cut(s) 229
BspCNI CTCAG 2 cut(s) 103, 427
BspFNI CGCG 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 513
BspPI GGATC 2 cut(s) 345, 420
BspQI GCTCTTC 1 cut(s) 216
BspT107I GGYRCC 1 cut(s) 511
BsrBI CCGCTC 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 477
BsrFI RCCGGY 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 113
BssMI GATC 4 cut(s) 157, 337, 348, 425
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 2 cut(s) 132, 216
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 4 cut(s) 90, 102, 343, 435
BstF5I GGATG 1 cut(s) 423
BstFNI CGCG 1 cut(s) 189
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 4 cut(s) 160, 340, 351, 428
BstMBI GATC 4 cut(s) 157, 337, 348, 425
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstPAI GACNNNNGTC 1 cut(s) 58
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 408
BstX2I RGATCY 2 cut(s) 157, 348
BstYI RGATCY 2 cut(s) 157, 348
BtgZI GCGATG 1 cut(s) 204
BtrI CACGTC 1 cut(s) 56
BtsCI GGATG 1 cut(s) 423
BtsI GCAGTG 2 cut(s) 376, 409
BtsIMutI CAGTG 3 cut(s) 130, 376, 409
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 189
Cfr10I RCCGGY 1 cut(s) 113
CseI GACGC 1 cut(s) 107
Csp6I GTAC 1 cut(s) 21
CspAI ACCGGT 1 cut(s) 113
CviAII CATG 1 cut(s) 516
CviJI RGCY 5 cut(s) 50, 77, 209, 414, 449
CviKI_1 RGCY 5 cut(s) 50, 77, 209, 414, 449
CviQI GTAC 1 cut(s) 21
DdeI CTNAG 4 cut(s) 90, 102, 343, 435
DpnI GATC 4 cut(s) 159, 339, 350, 427
DpnII GATC 4 cut(s) 157, 337, 348, 425
Eam1104I CTCTTC 2 cut(s) 132, 216
EarI CTCTTC 2 cut(s) 132, 216
FaeI CATG 1 cut(s) 519
FaiI YATR 5 cut(s) 27, 66, 455, 502, 517
FatI CATG 1 cut(s) 515
Fnu4HI GCNGC 1 cut(s) 422
FokI GGATG 1 cut(s) 430
Fsp4HI GCNGC 1 cut(s) 422
FspBI CTAG 1 cut(s) 51
GlaI GCGC 1 cut(s) 188
GluI GCNGC 1 cut(s) 422
HapII CCGG 1 cut(s) 114
HgaI GACGC 1 cut(s) 107
HhaI GCGC 1 cut(s) 189
Hin1II CATG 1 cut(s) 519
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 4 cut(s) 59, 86, 197, 437
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 1 cut(s) 114
HphI GGTGA 2 cut(s) 131, 142
Hpy166II GTNNAC 2 cut(s) 23, 391
Hpy188I TCNGA 3 cut(s) 18, 277, 436
Hpy188III TCNNGA 1 cut(s) 335
Hpy8I GTNNAC 2 cut(s) 23, 391
HpyAV CCTTC 3 cut(s) 36, 217, 323
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 3 cut(s) 470, 475, 490
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 4 cut(s) 90, 102, 343, 435
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 1 cut(s) 519
HspAI GCGC 1 cut(s) 187
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 4 cut(s) 157, 337, 348, 425
LguI GCTCTTC 1 cut(s) 216
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 5 cut(s) 18, 127, 320, 395, 400
Lsp1109I GCAGC 1 cut(s) 408
LweI GCATC 1 cut(s) 408
MaeI CTAG 1 cut(s) 51
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 3 cut(s) 119, 130, 461
MalI GATC 4 cut(s) 159, 339, 350, 427
MbiI CCGCTC 1 cut(s) 229
MboI GATC 4 cut(s) 157, 337, 348, 425
MboII GAAGA 5 cut(s) 149, 154, 167, 203, 206
MflI RGATCY 2 cut(s) 157, 348
MluCI AATT 2 cut(s) 145, 289
MlyI GAGTC 2 cut(s) 68, 446
MnlI CCTC 7 cut(s) 61, 121, 175, 235, 256, 295, 304
MseI TTAA 2 cut(s) 315, 390
MspI CCGG 1 cut(s) 114
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 184
NdeII GATC 4 cut(s) 157, 337, 348, 425
NlaIII CATG 1 cut(s) 519
NlaIV GGNNCC 1 cut(s) 513
NmuCI GTSAC 3 cut(s) 119, 130, 461
PciSI GCTCTTC 1 cut(s) 216
PfeI GAWTC 2 cut(s) 86, 197
PinAI ACCGGT 1 cut(s) 113
PkrI GCNGC 1 cut(s) 423
PleI GAGTC 2 cut(s) 67, 445
PpsI GAGTC 2 cut(s) 67, 445
PshAI GACNNNNGTC 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 513
PsuI RGATCY 2 cut(s) 157, 348
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
SapI GCTCTTC 1 cut(s) 216
SaqAI TTAA 2 cut(s) 315, 390
SatI GCNGC 1 cut(s) 422
Sau3AI GATC 4 cut(s) 157, 337, 348, 425
SchI GAGTC 2 cut(s) 68, 446
SetI ASST 6 cut(s) 52, 58, 132, 315, 334, 451
SfaNI GCATC 1 cut(s) 408
SmlI CTYRAG 1 cut(s) 352
SmoI CTYRAG 1 cut(s) 352
Sse9I AATT 2 cut(s) 145, 289
SsiI CCGC 1 cut(s) 229
SspMI CTAG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 125
TaiI ACGT 1 cut(s) 58
TasI AATT 2 cut(s) 145, 289
TatI WGTACW 1 cut(s) 20
TfiI GAWTC 2 cut(s) 86, 197
Tru1I TTAA 2 cut(s) 315, 390
Tru9I TTAA 2 cut(s) 315, 390
TscAI CASTG 3 cut(s) 130, 376, 409
TseFI GTSAC 3 cut(s) 119, 130, 461
TseI GCWGC 1 cut(s) 421
Tsp45I GTSAC 3 cut(s) 119, 130, 461
TspDTI ATGAA 3 cut(s) 168, 207, 342
TspRI CASTG 3 cut(s) 130, 376, 409
XapI RAATTY 1 cut(s) 289
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.