Rmu_sc0006536.1_g000031

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006536.1
N/A
Physical Location & Seq
Reverse (-)
114776 .. 115291
516 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 516 bp
atgatggggttggggtttgagtatgatggggaggaggaaatggagaattttgatggggatgttaggatgagggagaatggagatgggaggtttgtgtgtgaggaagtggagcagaatggttctagtttaaagaagaagaggaagagggaggtttcgactgcgttgggaaagaaggcgtgggcttttatcggtaaccagctgggaaagttgagggaaatggaggctcggttagaacagcgtgaggcggagagggaaagggagagacagaggagtgagagttttagagtggagtgtgagcaagaacgggaatggaaatgggaggaatgggtgaagaagaaggaggaaagagaaaaggaaagggagcagttgaagaagcagaggattcaagaatgggaagcattcgagaaggacagtgaggagagagagagaagaagaagagaagaagccttgattcatgagagggaatgggaggagaggatgaaagtgaatgaaagtgagagcagggcaaacccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

21.08

Weight (kDa)

5.25

Isoelectric Point (pI)

54.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 245
AcsI RAATTY 1 cut(s) 46
AgsI TTSAA 2 cut(s) 370, 386
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw26I GTCTC 1 cut(s) 256
ApoI RAATTY 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 340
BccI CCATC 3 cut(s) 20, 47, 77
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 1 cut(s) 123
BsaXI ACNNNNNCTCC 4 cut(s) 212, 242, 262, 292
BseGI GGATG 3 cut(s) 64, 72, 483
BseRI GAGGAG 4 cut(s) 47, 283, 431, 485
BseYI CCCAGC 1 cut(s) 199
BsmAI GTCTC 1 cut(s) 256
BsmI GAATGC 1 cut(s) 398
BspACI CCGC 1 cut(s) 245
BspHI TCATGA 1 cut(s) 454
Bst4CI ACNGT 1 cut(s) 413
Bst6I CTCTTC 3 cut(s) 131, 137, 430
BstDEI CTNAG 1 cut(s) 513
BstEII GGTNACC 1 cut(s) 191
BstF5I GGATG 3 cut(s) 64, 72, 483
BstMAI GTCTC 1 cut(s) 256
BstPI GGTNACC 1 cut(s) 191
BtsCI GGATG 3 cut(s) 64, 72, 483
BtsIMutI CAGTG 1 cut(s) 418
CciI TCATGA 1 cut(s) 454
CviAII CATG 1 cut(s) 455
CviJI RGCY 4 cut(s) 182, 199, 224, 446
CviKI_1 RGCY 4 cut(s) 182, 199, 224, 446
DdeI CTNAG 1 cut(s) 513
DraI TTTAAA 1 cut(s) 129
Eam1104I CTCTTC 3 cut(s) 131, 137, 430
EarI CTCTTC 3 cut(s) 131, 137, 430
EciI GGCGGA 1 cut(s) 260
Eco91I GGTNACC 1 cut(s) 191
EcoO65I GGTNACC 1 cut(s) 191
FaeI CATG 1 cut(s) 458
FaiI YATR 2 cut(s) 24, 456
FatI CATG 1 cut(s) 454
FokI GGATG 3 cut(s) 71, 79, 490
FspBI CTAG 1 cut(s) 123
GsaI CCCAGC 1 cut(s) 203
Hin1II CATG 1 cut(s) 458
HinfI GANTC 2 cut(s) 382, 451
HphI GGTGA 1 cut(s) 340
Hpy188III TCNNGA 3 cut(s) 386, 403, 455
HpyAV CCTTC 3 cut(s) 166, 331, 400
HpyCH4III ACNGT 1 cut(s) 413
HpyF3I CTNAG 1 cut(s) 513
Hsp92II CATG 1 cut(s) 458
LmnI GCTCC 2 cut(s) 109, 361
LpnPI CCDG 3 cut(s) 185, 209, 487
MaeI CTAG 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 191
MluCI AATT 1 cut(s) 46
MseI TTAA 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 199
Mva1269I GAATGC 1 cut(s) 398
NlaIII CATG 1 cut(s) 458
PagI TCATGA 1 cut(s) 454
PctI GAATGC 1 cut(s) 398
PfeI GAWTC 2 cut(s) 382, 451
PspEI GGTNACC 1 cut(s) 191
PspFI CCCAGC 1 cut(s) 199
PvuII CAGCTG 1 cut(s) 199
SaqAI TTAA 1 cut(s) 128
SetI ASST 3 cut(s) 92, 153, 201
Sse9I AATT 1 cut(s) 46
SsiI CCGC 1 cut(s) 245
SspMI CTAG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 413
TaqI TCGA 2 cut(s) 155, 402
TasI AATT 1 cut(s) 46
TfiI GAWTC 2 cut(s) 382, 451
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TscAI CASTG 1 cut(s) 418
TspDTI ATGAA 3 cut(s) 443, 494, 504
TspRI CASTG 1 cut(s) 418
XapI RAATTY 1 cut(s) 46
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.