Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006537.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

129136 .. 130898

Gene Structure 1763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atgttttcaaaggcgtcgccgaggcgagcccgaggggtgctcctgtgtgaggcgaccagaaatcgcctcgccggatcaaactcagatgtgctgctggaaaagcggctgcctaggcgacggagcatcgctttttgcagaggcggcgccttagtcaggaacgcgaggaagaagaagacgctaggagtctttctgcatctagagcatgttggagaaatgagcaggtgtcttctatggagattgtatgcagttggcagaatattagacaaggctctccaagtgaagactcgaggtgcaataggaactttgaggctccaaacatacttccataacacatttccttgtcccttccagtggctcctctgcttccccctcgggacccgcccctcgggtcgggtcttcttctggtcctacatctactacctttcccgcttcttccacatgatccgcacattcttcaccatcctccgccgcggcagattagtccccttccagctcttcaaccactccatcctcaccttcatctccttcatgtggctagaattctcgcagtctttccaagtgcttgccatactttcgactacgttggtgtattctgttgtttatgcttatcggttttgggtctcaatcgggctgccgcgggccggcttcgcgttcgtggtgaactgccagatgcttctgctgggctgcaatgtgagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0001101 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009922 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019367 GO:0019368 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0032870 GO:0033993 GO:0034625 GO:0034626 GO:0042175 GO:0042221 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0050896 GO:0051716 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0072330 GO:0097305 GO:0097306 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELO

Protein Analysis

232

Amino Acids

26.96

Weight (kDa)

11.24

Isoelectric Point (pI)

47.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELO	PF01151	103 - 230	1.6e-20	GNS1/SUR4 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	210
Acc36I	ACCTGC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	143
AccII	CGCG	4 cut(s)	161, 471, 637, 650
AclWI	GGATC	2 cut(s)	82, 436
AcsI	RAATTY	1 cut(s)	539
AcyI	GRCGYC	2 cut(s)	14, 144
AfiI	CCNNNNNNNGG	7 cut(s)	49, 153, 351, 385, 390, 531, 641
AgsI	TTSAA	2 cut(s)	9, 499
AluBI	AGCT	1 cut(s)	493
AluI	AGCT	1 cut(s)	493
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	625
AlwI	GGATC	2 cut(s)	82, 436
Ama87I	CYCGRG	4 cut(s)	30, 285, 371, 385
AoxI	GGCC	1 cut(s)	639
ApeKI	GCWGC	4 cut(s)	91, 106, 631, 684
ApoI	RAATTY	1 cut(s)	539
AspA2I	CCTAGG	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	3 cut(s)	375, 405, 639
AsuHPI	GGTGA	3 cut(s)	448, 505, 670
AvaI	CYCGRG	4 cut(s)	30, 285, 371, 385
AvaII	GGWCC	2 cut(s)	375, 405
AvrII	CCTAGG	1 cut(s)	110
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	31
BbsI	GAAGAC	4 cut(s)	179, 218, 287, 388
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	4 cut(s)	78, 93, 618, 671
BccI	CCATC	2 cut(s)	467, 515
BcoDI	GTCTC	1 cut(s)	625
BfaI	CTAG	4 cut(s)	111, 179, 197, 536
BfoI	RGCGCY	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	210
BisI	GCNGC	9 cut(s)	92, 104, 107, 142, 469, 472, 632, 635, 685
BlnI	CCTAGG	1 cut(s)	110
BlsI	GCNGC	9 cut(s)	93, 105, 108, 143, 470, 473, 633, 636, 686
Bme18I	GGWCC	2 cut(s)	375, 405
BmeT110I	CYCGRG	4 cut(s)	30, 285, 371, 385
BmgT120I	GGNCC	3 cut(s)	375, 405, 639
BmiI	GGNNCC	5 cut(s)	145, 311, 356, 376, 377
BmsI	GCATC	3 cut(s)	132, 202, 660
BpiI	GAAGAC	4 cut(s)	179, 218, 287, 388
BplI	GAGNNNNNCTC	2 cut(s)	24, 56
BsaHI	GRCGYC	2 cut(s)	14, 144
BsaI	GGTCTC	1 cut(s)	625
BsaJI	CCNNGG	7 cut(s)	20, 31, 110, 370, 384, 469, 635
Bsc4I	CCNNNNNNNGG	7 cut(s)	49, 153, 351, 385, 390, 531, 641
Bse118I	RCCGGY	1 cut(s)	641
Bse1I	ACTGG	1 cut(s)	349
Bse3DI	GCAATG	1 cut(s)	694
BseDI	CCNNGG	7 cut(s)	20, 31, 110, 370, 384, 469, 635
BseGI	GGATG	2 cut(s)	459, 507
BseLI	CCNNNNNNNGG	7 cut(s)	49, 153, 351, 385, 390, 531, 641
BseMI	GCAATG	1 cut(s)	694
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	349
BseRI	GAGGAG	1 cut(s)	347
BseXI	GCAGC	4 cut(s)	78, 93, 618, 671
BseYI	CCCAGC	1 cut(s)	679
Bsh1236I	CGCG	4 cut(s)	161, 471, 637, 650
BshFI	GGCC	1 cut(s)	641
BshNI	GGYRCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	4 cut(s)	30, 285, 371, 385
BsiSI	CCGG	2 cut(s)	72, 642
BslFI	GGGAC	3 cut(s)	327, 388, 467
BslI	CCNNNNNNNGG	7 cut(s)	49, 153, 351, 385, 390, 531, 641
BsmAI	GTCTC	1 cut(s)	625
BsmFI	GGGAC	3 cut(s)	327, 388, 467
BsnI	GGCC	1 cut(s)	641
Bso31I	GGTCTC	1 cut(s)	625
BsoBI	CYCGRG	4 cut(s)	30, 285, 371, 385
Bsp1286I	GDGCHC	2 cut(s)	31, 42
Bsp143I	GATC	2 cut(s)	74, 441
BspANI	GGCC	1 cut(s)	641
BspCNI	CTCAG	1 cut(s)	95
BspFNI	CGCG	4 cut(s)	161, 471, 637, 650
BspLI	GGNNCC	5 cut(s)	145, 311, 356, 376, 377
BspMI	ACCTGC	1 cut(s)	210
BspPI	GGATC	2 cut(s)	82, 436
BspQI	GCTCTTC	1 cut(s)	500
BspT107I	GGYRCC	1 cut(s)	143
BspTNI	GGTCTC	1 cut(s)	625
BsrDI	GCAATG	1 cut(s)	694
BsrFI	RCCGGY	1 cut(s)	641
BsrI	ACTGG	1 cut(s)	349
BssAI	RCCGGY	1 cut(s)	641
BssECI	CCNNGG	7 cut(s)	20, 31, 110, 370, 384, 469, 635
BssMI	GATC	2 cut(s)	74, 441
BssNI	GRCGYC	2 cut(s)	14, 144
BssT1I	CCWWGG	1 cut(s)	110
Bst6I	CTCTTC	1 cut(s)	500
BstACI	GRCGYC	2 cut(s)	14, 144
BstC8I	GCNNGC	4 cut(s)	27, 564, 639, 643
BstDEI	CTNAG	2 cut(s)	82, 148
BstDSI	CCRYGG	2 cut(s)	469, 635
BstENI	CCTNNNNNAGG	2 cut(s)	47, 151
BstF5I	GGATG	2 cut(s)	459, 507
BstFNI	CGCG	4 cut(s)	161, 471, 637, 650
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	2 cut(s)	77, 444
BstMAI	GTCTC	1 cut(s)	625
BstMBI	GATC	2 cut(s)	74, 441
BstMWI	GCNNNNNNNGC	5 cut(s)	100, 112, 141, 199, 647
BstNSI	RCATGY	1 cut(s)	206
BstUI	CGCG	4 cut(s)	161, 471, 637, 650
BstV1I	GCAGC	4 cut(s)	78, 93, 618, 671
BstV2I	GAAGAC	4 cut(s)	179, 218, 287, 388
BsuRI	GGCC	1 cut(s)	641
BtgI	CCRYGG	2 cut(s)	469, 635
BtgZI	GCGATG	1 cut(s)	109
BtsCI	GGATG	2 cut(s)	459, 507
BtsIMutI	CAGTG	1 cut(s)	356
BveI	ACCTGC	1 cut(s)	210
Cac8I	GCNNGC	4 cut(s)	27, 564, 639, 643
CfoI	GCGC	1 cut(s)	146
Cfr10I	RCCGGY	1 cut(s)	641
Cfr13I	GGNCC	3 cut(s)	375, 405, 639
Cfr42I	CCGCGG	2 cut(s)	472, 638
CseI	GACGC	2 cut(s)	3, 184
CviAII	CATG	3 cut(s)	203, 439, 529
DdeI	CTNAG	2 cut(s)	82, 148
DinI	GGCGCC	1 cut(s)	145
DpnI	GATC	2 cut(s)	76, 443
DpnII	GATC	2 cut(s)	74, 441
Eam1104I	CTCTTC	1 cut(s)	500
EarI	CTCTTC	1 cut(s)	500
EciI	GGCGGA	1 cut(s)	455
Eco130I	CCWWGG	1 cut(s)	110
Eco24I	GRGCYC	1 cut(s)	31
Eco31I	GGTCTC	1 cut(s)	625
Eco47I	GGWCC	2 cut(s)	375, 405
Eco88I	CYCGRG	4 cut(s)	30, 285, 371, 385
EcoNI	CCTNNNNNAGG	2 cut(s)	47, 151
EcoO109I	RGGNCCY	1 cut(s)	375
EcoRI	GAATTC	1 cut(s)	539
EcoT14I	CCWWGG	1 cut(s)	110
EcoT38I	GRGCYC	1 cut(s)	31
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	110
FaeI	CATG	3 cut(s)	206, 442, 532
FaiI	YATR	9 cut(s)	204, 232, 243, 319, 327, 440, 530, 569, 603
FaqI	GGGAC	3 cut(s)	327, 388, 467
FatI	CATG	3 cut(s)	202, 438, 528
FauI	CCCGC	3 cut(s)	386, 434, 630
Fnu4HI	GCNGC	9 cut(s)	92, 104, 107, 142, 469, 472, 632, 635, 685
FokI	GGATG	2 cut(s)	446, 494
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	9 cut(s)	92, 104, 107, 142, 469, 472, 632, 635, 685
FspBI	CTAG	4 cut(s)	111, 179, 197, 536
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	9 cut(s)	92, 104, 107, 142, 469, 472, 632, 635, 685
GsaI	CCCAGC	1 cut(s)	683
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	641
HapII	CCGG	2 cut(s)	72, 642
HgaI	GACGC	2 cut(s)	3, 184
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	2 cut(s)	14, 144
Hin1II	CATG	3 cut(s)	206, 442, 532
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HinfI	GANTC	2 cut(s)	183, 283
HpaII	CCGG	2 cut(s)	72, 642
HphI	GGTGA	3 cut(s)	448, 505, 670
Hpy166II	GTNNAC	1 cut(s)	661
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	3 cut(s)	154, 197, 373
Hpy8I	GTNNAC	1 cut(s)	661
Hpy99I	CGWCG	2 cut(s)	19, 120
HpyAV	CCTTC	4 cut(s)	355, 496, 526, 535
HpyCH4IV	ACGT	1 cut(s)	581
HpyCH4V	TGCA	5 cut(s)	135, 193, 245, 293, 687
HpyF10VI	GCNNNNNNNGC	5 cut(s)	100, 112, 141, 199, 647
HpyF3I	CTNAG	2 cut(s)	82, 148
HpySE526I	ACGT	1 cut(s)	581
Hsp92I	GRCGYC	2 cut(s)	14, 144
Hsp92II	CATG	3 cut(s)	206, 442, 532
HspAI	GCGC	1 cut(s)	144
KasI	GGCGCC	1 cut(s)	143
KflI	GGGWCCC	1 cut(s)	375
KroI	GCCGGC	1 cut(s)	641
KroNI	GCCGGC	1 cut(s)	643
KspI	CCGCGG	2 cut(s)	472, 638
Kzo9I	GATC	2 cut(s)	74, 441
LguI	GCTCTTC	1 cut(s)	500
LmnI	GCTCC	4 cut(s)	45, 120, 315, 360
Lsp1109I	GCAGC	4 cut(s)	78, 93, 618, 671
LweI	GCATC	3 cut(s)	132, 202, 660
MaeI	CTAG	4 cut(s)	111, 179, 197, 536
MaeII	ACGT	1 cut(s)	581
MalI	GATC	2 cut(s)	76, 443
MboI	GATC	2 cut(s)	74, 441
MhlI	GDGCHC	2 cut(s)	31, 42
MluCI	AATT	1 cut(s)	539
Mly113I	GGCGCC	1 cut(s)	144
MlyI	GAGTC	2 cut(s)	192, 277
MmeI	TCCRAC	1 cut(s)	187
MroNI	GCCGGC	1 cut(s)	641
MspA1I	CMGCKG	2 cut(s)	471, 637
MspI	CCGG	2 cut(s)	72, 642
MvnI	CGCG	4 cut(s)	161, 471, 637, 650
MwoI	GCNNNNNNNGC	5 cut(s)	100, 112, 141, 199, 647
NaeI	GCCGGC	1 cut(s)	643
NarI	GGCGCC	1 cut(s)	144
NdeII	GATC	2 cut(s)	74, 441
NgoMIV	GCCGGC	1 cut(s)	641
NlaIII	CATG	3 cut(s)	206, 442, 532
NlaIV	GGNNCC	5 cut(s)	145, 311, 356, 376, 377
NmeAIII	GCCGAG	1 cut(s)	45
NspI	RCATGY	1 cut(s)	206
PaeR7I	CTCGAG	1 cut(s)	285
PaqCI	CACCTGC	1 cut(s)	210
PciSI	GCTCTTC	1 cut(s)	500
PdiI	GCCGGC	1 cut(s)	643
PkrI	GCNGC	9 cut(s)	93, 105, 108, 143, 470, 473, 633, 636, 686
PleI	GAGTC	2 cut(s)	191, 277
PluTI	GGCGCC	1 cut(s)	147
PpsI	GAGTC	2 cut(s)	191, 277
PpuMI	RGGWCCY	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	375
PspFI	CCCAGC	1 cut(s)	679
PspN4I	GGNNCC	5 cut(s)	145, 311, 356, 376, 377
PspPI	GGNCC	3 cut(s)	375, 405, 639
PspPPI	RGGWCCY	1 cut(s)	375
PspXI	VCTCGAGB	1 cut(s)	285
SacII	CCGCGG	2 cut(s)	472, 638
SapI	GCTCTTC	1 cut(s)	500
SatI	GCNGC	9 cut(s)	92, 104, 107, 142, 469, 472, 632, 635, 685
Sau3AI	GATC	2 cut(s)	74, 441
Sau96I	GGNCC	3 cut(s)	375, 405, 639
SchI	GAGTC	2 cut(s)	192, 277
SduI	GDGCHC	2 cut(s)	31, 42
SetI	ASST	6 cut(s)	224, 292, 423, 495, 518, 584
SfaNI	GCATC	3 cut(s)	132, 202, 660
SfoI	GGCGCC	1 cut(s)	145
Sfr274I	CTCGAG	1 cut(s)	285
Sfr303I	CCGCGG	2 cut(s)	472, 638
SgrBI	CCGCGG	2 cut(s)	472, 638
SinI	GGWCC	2 cut(s)	375, 405
SlaI	CTCGAG	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	285
SmoI	CTYRAG	1 cut(s)	285
Sse9I	AATT	1 cut(s)	539
SspDI	GGCGCC	1 cut(s)	143
SspI	AATATT	1 cut(s)	258
SspMI	CTAG	4 cut(s)	111, 179, 197, 536
StyI	CCWWGG	1 cut(s)	110
TaiI	ACGT	1 cut(s)	584
TaqI	TCGA	2 cut(s)	286, 575
TasI	AATT	1 cut(s)	539
TauI	GCSGC	5 cut(s)	106, 144, 471, 474, 637
TscAI	CASTG	1 cut(s)	356
TseI	GCWGC	4 cut(s)	91, 106, 631, 684
TspDTI	ATGAA	2 cut(s)	508, 517
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	1 cut(s)	356
VpaK11BI	GGWCC	2 cut(s)	375, 405
XagI	CCTNNNNNAGG	2 cut(s)	47, 151
XapI	RAATTY	1 cut(s)	539
XbaI	TCTAGA	1 cut(s)	196
XceI	RCATGY	1 cut(s)	206
XhoI	CTCGAG	1 cut(s)	285
XmaJI	CCTAGG	1 cut(s)	110
XspI	CTAG	4 cut(s)	111, 179, 197, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.