Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006550.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

17050 .. 24618

Gene Structure 7569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

atgacaaaacaggggatacctgatcgagtaactactgaggtgtttattgccatgtcaaaggcccttaactttattaatcccgatgagctctcaatgcaatgcatattgattgctttgaatcgatttcttcaggagaaacacggttccaagatggctttccttgatggaagtcctcccgagagactctgtcaaccaatcgttgatcatatccagtcattggggggtgaagtccggcttaattctcgattacagaagattgagctaaataatgatggaacagtgaagagttttgtactacaaaataacagtgtgattgaagcggatgcttatgtatctgccgctccagttgatatcttcaagcttctagtgcctgaaaactggaaagagattccatatttcaagaaattggacaaactagttggagttccagtcatcaatgtacacatatggtttgacagaaaactaaagaacacatatgatcacctactttttagcagaagtcctcttctaagtgtgtatgctgatatgtcggtaacatgtaaggagtattacaatccaaaccagtctatgctagagttggtttttgcaccagcagaagaatggatttcacgcagtgattcagaaattattgatgctacactcaaagaacttgcaaagctctttcctgatgagatagctgcagatcaaagcaaagcgaagattttgaagtaccatgttgtgaaaacaccaaggtctgtgtacaaaactataccagattgtgaaccttgccgtccgttgcaaagatctcccttggagggtttctatttaactggtgactatacaaaacaaaaatacttggcctctatggaaggtgctgttctatcagggaaactttgtgctcaggcgattgtacaggagtattacaatccaaaccagtctatgctagagttggtttttgcaccagcagaagaatggatttcacgcagtgattcagaaattattgatgctacactcaaagaacttgcaaagctctttcctgatgagatagctgcagatcaaagcaaagcgaagattttgaagtaccatgttgtgaaaacaccaaggtctgtgtacaaaactataccagattgtgaaccttgccgtccgttgcaaagatctcccttggagggtttctatttaactggtgactatacaaaacaaaaatacttggcctctatggaaggtgctgttctatcagggaaactttgtgctcaggcgattgtacaggactatgaattgctcgttgctcggggccagaaaaggttggctgaggcaggtgctagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016166 GO:0016491 GO:0016627 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

434

Amino Acids

49.0

Weight (kDa)

6.37

Isoelectric Point (pI)

47.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amino_oxidase	PF01593	14 - 296	8.5e-53	Flavin containing amine oxidoreductase
Amino_oxidase	PF01593	299 - 413	7.5e-23	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1283
Acc36I	ACCTGC	1 cut(s)	1283
AccB7I	CCANNNNNTGG	1 cut(s)	217
AccBSI	CCGCTC	1 cut(s)	341
AciI	CCGC	2 cut(s)	320, 339
AcuI	CTGAAG	1 cut(s)	113
AdeI	CACNNNGTG	2 cut(s)	614, 965
AfaI	GTAC	8 cut(s)	294, 441, 710, 740, 891, 1061, 1091, 1242
AfiI	CCNNNNNNNGG	3 cut(s)	217, 794, 1145
AflIII	ACRYGT	1 cut(s)	536
AgsI	TTSAA	6 cut(s)	118, 317, 358, 400, 706, 1057
AhlI	ACTAGT	1 cut(s)	415
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	7 cut(s)	88, 262, 361, 658, 677, 1009, 1028
AluI	AGCT	7 cut(s)	88, 262, 361, 658, 677, 1009, 1028
Alw21I	GWGCWC	3 cut(s)	90, 880, 1231
Alw26I	GTCTC	1 cut(s)	175
Ama87I	CYCGRG	2 cut(s)	176, 1266
AoxI	GGCC	4 cut(s)	60, 837, 1188, 1270
ApeKI	GCWGC	2 cut(s)	677, 1028
AseI	ATTAAT	1 cut(s)	75
AspS9I	GGNCC	2 cut(s)	61, 1270
AsuHPI	GGTGA	4 cut(s)	236, 473, 824, 1175
AvaI	CYCGRG	2 cut(s)	176, 1266
BanII	GRGCYC	1 cut(s)	90
Bbv12I	GWGCWC	3 cut(s)	90, 880, 1231
BbvCI	CCTCAGC	1 cut(s)	1287
BbvI	GCAGC	2 cut(s)	664, 1015
BccI	CCATC	3 cut(s)	145, 158, 266
BceAI	ACGGC	2 cut(s)	753, 1104
BciVI	GTATCC	1 cut(s)	9
BclI	TGATCA	2 cut(s)	202, 478
BcoDI	GTCTC	1 cut(s)	175
BcuI	ACTAGT	1 cut(s)	415
BfaI	CTAG	5 cut(s)	365, 416, 572, 923, 1299
BfmI	CTRYAG	2 cut(s)	678, 1029
BfuAI	ACCTGC	1 cut(s)	1283
BfuI	GTATCC	1 cut(s)	9
BglII	AGATCT	2 cut(s)	782, 1133
BisI	GCNGC	3 cut(s)	339, 678, 1029
BlsI	GCNGC	3 cut(s)	340, 679, 1030
BmeT110I	CYCGRG	2 cut(s)	176, 1266
BmgT120I	GGNCC	2 cut(s)	61, 1270
BmiI	GGNNCC	2 cut(s)	145, 1271
BmsI	GCATC	3 cut(s)	313, 622, 973
BpmI	CTGGAG	1 cut(s)	327
Bpu10I	CCTNAGC	3 cut(s)	879, 1230, 1287
Bsa29I	ATCGAT	1 cut(s)	121
BsaJI	CCNNGG	4 cut(s)	728, 789, 1079, 1140
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 794, 1145
Bse1I	ACTGG	8 cut(s)	211, 344, 383, 428, 562, 814, 913, 1165
Bse3DI	GCAATG	1 cut(s)	104
BseCI	ATCGAT	1 cut(s)	121
BseDI	CCNNGG	4 cut(s)	728, 789, 1079, 1140
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	3 cut(s)	217, 794, 1145
BseMI	GCAATG	1 cut(s)	104
BseMII	CTCAG	4 cut(s)	27, 893, 1244, 1278
BseNI	ACTGG	8 cut(s)	211, 344, 383, 428, 562, 814, 913, 1165
BseXI	GCAGC	2 cut(s)	664, 1015
BshFI	GGCC	4 cut(s)	62, 839, 1190, 1272
BshVI	ATCGAT	1 cut(s)	121
BsiHKAI	GWGCWC	3 cut(s)	90, 880, 1231
BsiHKCI	CYCGRG	2 cut(s)	176, 1266
BsiSI	CCGG	1 cut(s)	232
BslI	CCNNNNNNNGG	3 cut(s)	217, 794, 1145
BsmAI	GTCTC	1 cut(s)	175
BsnI	GGCC	4 cut(s)	62, 839, 1190, 1272
BsoBI	CYCGRG	2 cut(s)	176, 1266
Bsp1286I	GDGCHC	3 cut(s)	90, 880, 1231
Bsp1407I	TGTACA	5 cut(s)	439, 738, 889, 1089, 1240
Bsp143I	GATC	7 cut(s)	22, 202, 478, 682, 782, 1033, 1133
BspACI	CCGC	2 cut(s)	320, 339
BspANI	GGCC	4 cut(s)	62, 839, 1190, 1272
BspCNI	CTCAG	4 cut(s)	28, 892, 1243, 1279
BspDI	ATCGAT	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	145, 1271
BspMAI	CTGCAG	2 cut(s)	682, 1033
BspMI	ACCTGC	1 cut(s)	1283
BsrBI	CCGCTC	1 cut(s)	341
BsrDI	GCAATG	1 cut(s)	104
BsrGI	TGTACA	5 cut(s)	439, 738, 889, 1089, 1240
BsrI	ACTGG	8 cut(s)	211, 344, 383, 428, 562, 814, 913, 1165
BssECI	CCNNGG	4 cut(s)	728, 789, 1079, 1140
BssMI	GATC	7 cut(s)	22, 202, 478, 682, 782, 1033, 1133
BssT1I	CCWWGG	4 cut(s)	728, 789, 1079, 1140
Bst4CI	ACNGT	3 cut(s)	143, 280, 308
Bst6I	CTCTTC	2 cut(s)	278, 510
BstAUI	TGTACA	5 cut(s)	439, 738, 889, 1089, 1240
BstDEI	CTNAG	5 cut(s)	36, 509, 879, 1230, 1287
BstF5I	GGATG	1 cut(s)	328
BstKTI	GATC	7 cut(s)	25, 205, 481, 685, 785, 1036, 1136
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	7 cut(s)	22, 202, 478, 682, 782, 1033, 1133
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 367
BstNSI	RCATGY	1 cut(s)	540
BstSFI	CTRYAG	2 cut(s)	678, 1029
BstV1I	GCAGC	2 cut(s)	664, 1015
BstX2I	RGATCY	2 cut(s)	782, 1133
BstYI	RGATCY	2 cut(s)	782, 1133
Bsu15I	ATCGAT	1 cut(s)	121
BsuI	GTATCC	1 cut(s)	9
BsuRI	GGCC	4 cut(s)	62, 839, 1190, 1272
BsuTUI	ATCGAT	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	328
BtsI	GCAGTG	2 cut(s)	619, 970
BtsIMutI	CAGTG	4 cut(s)	285, 313, 619, 970
BveI	ACCTGC	1 cut(s)	1283
Cfr13I	GGNCC	2 cut(s)	61, 1270
ClaI	ATCGAT	1 cut(s)	121
Csp6I	GTAC	8 cut(s)	293, 440, 709, 739, 890, 1060, 1090, 1241
CviAII	CATG	4 cut(s)	52, 537, 713, 1064
CviQI	GTAC	8 cut(s)	293, 440, 709, 739, 890, 1060, 1090, 1241
DdeI	CTNAG	5 cut(s)	36, 509, 879, 1230, 1287
DpnI	GATC	7 cut(s)	24, 204, 480, 684, 784, 1035, 1135
DpnII	GATC	7 cut(s)	22, 202, 478, 682, 782, 1033, 1133
DraIII	CACNNNGTG	2 cut(s)	614, 965
Eam1104I	CTCTTC	2 cut(s)	278, 510
EarI	CTCTTC	2 cut(s)	278, 510
Ecl136II	GAGCTC	1 cut(s)	88
Eco130I	CCWWGG	4 cut(s)	728, 789, 1079, 1140
Eco24I	GRGCYC	1 cut(s)	90
Eco32I	GATATC	1 cut(s)	352
Eco53kI	GAGCTC	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	113
Eco88I	CYCGRG	2 cut(s)	176, 1266
EcoICRI	GAGCTC	1 cut(s)	88
EcoO109I	RGGNCCY	1 cut(s)	61
EcoRV	GATATC	1 cut(s)	352
EcoT14I	CCWWGG	4 cut(s)	728, 789, 1079, 1140
EcoT22I	ATGCAT	1 cut(s)	104
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	4 cut(s)	728, 789, 1079, 1140
FaeI	CATG	4 cut(s)	55, 540, 716, 1067
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FatI	CATG	4 cut(s)	51, 536, 712, 1063
FauNDI	CATATG	2 cut(s)	446, 475
FbaI	TGATCA	2 cut(s)	202, 478
Fnu4HI	GCNGC	3 cut(s)	339, 678, 1029
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	3 cut(s)	339, 678, 1029
FspBI	CTAG	5 cut(s)	365, 416, 572, 923, 1299
GluI	GCNGC	3 cut(s)	339, 678, 1029
GsuI	CTGGAG	1 cut(s)	327
HaeIII	GGCC	4 cut(s)	62, 839, 1190, 1272
HapII	CCGG	1 cut(s)	232
Hin1II	CATG	4 cut(s)	55, 540, 716, 1067
HincII	GTYRAC	1 cut(s)	191
HindII	GTYRAC	1 cut(s)	191
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	5 cut(s)	118, 183, 388, 617, 968
HpaII	CCGG	1 cut(s)	232
HphI	GGTGA	4 cut(s)	236, 473, 824, 1175
Hpy166II	GTNNAC	6 cut(s)	191, 442, 739, 761, 1090, 1112
Hpy188I	TCNGA	2 cut(s)	622, 973
Hpy188III	TCNNGA	7 cut(s)	80, 131, 176, 243, 400, 665, 1016
Hpy8I	GTNNAC	6 cut(s)	191, 442, 739, 761, 1090, 1112
HpyAV	CCTTC	2 cut(s)	842, 1193
HpyCH4III	ACNGT	3 cut(s)	143, 280, 308
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 367
HpyF3I	CTNAG	5 cut(s)	36, 509, 879, 1230, 1287
Hsp92II	CATG	4 cut(s)	55, 540, 716, 1067
Ksp22I	TGATCA	2 cut(s)	202, 478
Kzo9I	GATC	7 cut(s)	22, 202, 478, 682, 782, 1033, 1133
LmnI	GCTCC	1 cut(s)	346
Lsp1109I	GCAGC	2 cut(s)	664, 1015
LweI	GCATC	3 cut(s)	313, 622, 973
MaeI	CTAG	5 cut(s)	365, 416, 572, 923, 1299
MaeIII	GTNAC	4 cut(s)	28, 532, 812, 1163
MalI	GATC	7 cut(s)	24, 204, 480, 684, 784, 1035, 1135
MbiI	CCGCTC	1 cut(s)	341
MboI	GATC	7 cut(s)	22, 202, 478, 682, 782, 1033, 1133
MboII	GAAGA	9 cut(s)	119, 265, 295, 346, 497, 608, 709, 959, 1060
MflI	RGATCY	2 cut(s)	782, 1133
MhlI	GDGCHC	3 cut(s)	90, 880, 1231
MluCI	AATT	5 cut(s)	238, 404, 624, 975, 1253
MlyI	GAGTC	1 cut(s)	177
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	8 cut(s)	31, 183, 513, 787, 850, 1138, 1201, 1282
Mph1103I	ATGCAT	1 cut(s)	104
MseI	TTAA	5 cut(s)	66, 75, 237, 806, 1157
MspI	CCGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	2 cut(s)	94, 367
NdeI	CATATG	2 cut(s)	446, 475
NdeII	GATC	7 cut(s)	22, 202, 478, 682, 782, 1033, 1133
NlaIII	CATG	4 cut(s)	55, 540, 716, 1067
NlaIV	GGNNCC	2 cut(s)	145, 1271
NmuCI	GTSAC	2 cut(s)	812, 1163
NsiI	ATGCAT	1 cut(s)	104
NspI	RCATGY	1 cut(s)	540
PaqCI	CACCTGC	1 cut(s)	1283
PciI	ACATGT	1 cut(s)	536
PfeI	GAWTC	4 cut(s)	118, 388, 617, 968
PflFI	GACNNNGTC	1 cut(s)	186
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	3 cut(s)	340, 679, 1030
PleI	GAGTC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	177
PscI	ACATGT	1 cut(s)	536
PshBI	ATTAAT	1 cut(s)	75
Psp124BI	GAGCTC	1 cut(s)	90
PspN4I	GGNNCC	2 cut(s)	145, 1271
PspPI	GGNCC	2 cut(s)	61, 1270
PstI	CTGCAG	2 cut(s)	682, 1033
PsuI	RGATCY	2 cut(s)	782, 1133
PsyI	GACNNNGTC	1 cut(s)	186
RsaI	GTAC	8 cut(s)	294, 441, 710, 740, 891, 1061, 1091, 1242
RsaNI	GTAC	8 cut(s)	293, 440, 709, 739, 890, 1060, 1090, 1241
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	5 cut(s)	66, 75, 237, 806, 1157
SatI	GCNGC	3 cut(s)	339, 678, 1029
Sau3AI	GATC	7 cut(s)	22, 202, 478, 682, 782, 1033, 1133
Sau96I	GGNCC	2 cut(s)	61, 1270
SchI	GAGTC	1 cut(s)	177
SduI	GDGCHC	3 cut(s)	90, 880, 1231
SfaNI	GCATC	3 cut(s)	313, 622, 973
SfcI	CTRYAG	2 cut(s)	678, 1029
SpeI	ACTAGT	1 cut(s)	415
Sse9I	AATT	5 cut(s)	238, 404, 624, 975, 1253
SsiI	CCGC	2 cut(s)	320, 339
SspMI	CTAG	5 cut(s)	365, 416, 572, 923, 1299
SstI	GAGCTC	1 cut(s)	90
StyI	CCWWGG	4 cut(s)	728, 789, 1079, 1140
TaaI	ACNGT	3 cut(s)	143, 280, 308
TaqI	TCGA	3 cut(s)	25, 121, 244
TasI	AATT	5 cut(s)	238, 404, 624, 975, 1253
TatI	WGTACW	6 cut(s)	292, 439, 738, 889, 1089, 1240
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	4 cut(s)	118, 388, 617, 968
Tru1I	TTAA	5 cut(s)	66, 75, 237, 806, 1157
Tru9I	TTAA	5 cut(s)	66, 75, 237, 806, 1157
TscAI	CASTG	4 cut(s)	285, 313, 619, 970
TseFI	GTSAC	2 cut(s)	812, 1163
TseI	GCWGC	2 cut(s)	677, 1028
Tsp45I	GTSAC	2 cut(s)	812, 1163
TspDTI	ATGAA	1 cut(s)	1266
TspGWI	ACGGA	2 cut(s)	762, 1113
TspRI	CASTG	4 cut(s)	285, 313, 619, 970
Tth111I	GACNNNGTC	1 cut(s)	186
Van91I	CCANNNNNTGG	1 cut(s)	217
VspI	ATTAAT	1 cut(s)	75
XceI	RCATGY	1 cut(s)	540
XcmI	CCANNNNNNNNNTGG	2 cut(s)	597, 948
XspI	CTAG	5 cut(s)	365, 416, 572, 923, 1299
Zsp2I	ATGCAT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.