Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006550.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

24643 .. 28766

Gene Structure 4124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgtcgcagtgggcttgtgtctctgccaccaacttgagctaccaagccaacttcatcaacacccaaaaccctcaaaccactcccagatatgatgcgctttcctttcacggcagtgaaattgttgctcggaattttgggtttctgagctcacaagctactactagtatgggtaaaaggctgaggaagggtgctctccctttgaaggtggtttgtgtggattatccgagacccgagcttgataatactgtaaatttcttagaagctgcgctcttgtcttcctcttttcgagcctcttctcgcccagctaagccgctgaaggttgtgattgctggtgcaggtttggctggtttgtcaactgcaaagtatttggcagatgcaggtcataaacccatactgctggaagcaagagacgttttaggtggaaagattgctgcatggaaagataaagatggagactggtatgagacaggcctacatatattttttggggcttatccaaatattcagaacttgtttggagagcttggtatcaatgatcgattgcagtggaaggaacactctatgatatttgcaatgccaaacaagccaggagagttcagccggtttgatttccctgaagttctgccagcacccttaaatggaatatgggccatattaaagaacaatgagatgctgacatggccagaaaaagtgaagtttgctatcggacttgtgccagcaattcttggtggacaggcttatgttgaagcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016166 GO:0016491 GO:0016627 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

250

Amino Acids

27.46

Weight (kDa)

8.78

Isoelectric Point (pI)

30.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAO	PF01266	106 - 141	8.7e-06	FAD dependent oxidoreductase
NAD_binding_8	PF13450	109 - 175	1.3e-14	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	114 - 239	6.3e-34	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	326, 368
AciI	CCGC	1 cut(s)	311
AcoI	YGGCCR	1 cut(s)	680
AcsI	RAATTY	2 cut(s)	130, 250
AcuI	CTGAAG	2 cut(s)	335, 636
AfiI	CCNNNNNNNGG	2 cut(s)	202, 638
AgsI	TTSAA	2 cut(s)	202, 746
AhlI	ACTAGT	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	586
AleI	CACNNNNGTG	1 cut(s)	111
AluBI	AGCT	8 cut(s)	39, 147, 155, 235, 263, 305, 523, 749
AluI	AGCT	8 cut(s)	39, 147, 155, 235, 263, 305, 523, 749
Alw21I	GWGCWC	2 cut(s)	149, 193
Alw26I	GTCTC	5 cut(s)	25, 220, 402, 447, 458
Ama87I	CYCGRG	1 cut(s)	230
AoxI	GGCC	3 cut(s)	469, 648, 680
ApeKI	GCWGC	2 cut(s)	263, 431
ApoI	RAATTY	2 cut(s)	130, 250
AspLEI	GCGC	2 cut(s)	97, 268
AspS9I	GGNCC	1 cut(s)	648
AvaI	CYCGRG	1 cut(s)	230
BalI	TGGCCA	1 cut(s)	682
BanII	GRGCYC	1 cut(s)	149
BbsI	GAAGAC	1 cut(s)	267
Bbv12I	GWGCWC	2 cut(s)	149, 193
BbvCI	CCTCAGC	1 cut(s)	179
BbvI	GCAGC	2 cut(s)	250, 418
BccI	CCATC	1 cut(s)	443
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	588
BcoDI	GTCTC	5 cut(s)	25, 220, 402, 447, 458
BcuI	ACTAGT	1 cut(s)	161
BfaI	CTAG	1 cut(s)	162
BfuAI	ACCTGC	2 cut(s)	326, 368
BisI	GCNGC	3 cut(s)	264, 311, 432
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	3 cut(s)	265, 312, 433
Bme1390I	CCNGG	1 cut(s)	588
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	648
BmrFI	CCNGG	1 cut(s)	588
BmsI	GCATC	3 cut(s)	82, 364, 660
BpiI	GAAGAC	1 cut(s)	267
Bpu10I	CCTNAGC	1 cut(s)	179
Bpu1102I	GCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	55
Bsa29I	ATCGAT	1 cut(s)	538
BsaI	GGTCTC	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 638
Bse118I	RCCGGY	1 cut(s)	600
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	1 cut(s)	579
BseBI	CCWGG	1 cut(s)	588
BseCI	ATCGAT	1 cut(s)	538
BseLI	CCNNNNNNNGG	2 cut(s)	202, 638
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	2 cut(s)	134, 170
BseNI	ACTGG	1 cut(s)	461
BseXI	GCAGC	2 cut(s)	250, 418
BseYI	CCCAGC	1 cut(s)	301
BsgI	GTGCAG	1 cut(s)	354
BshFI	GGCC	3 cut(s)	471, 650, 682
BshVI	ATCGAT	1 cut(s)	538
BsiHKAI	GWGCWC	2 cut(s)	149, 193
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	601
BslI	CCNNNNNNNGG	2 cut(s)	202, 638
BsmAI	GTCTC	5 cut(s)	25, 220, 402, 447, 458
BsmBI	CGTCTC	1 cut(s)	402
BsnI	GGCC	3 cut(s)	471, 650, 682
Bso31I	GGTCTC	1 cut(s)	220
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	2 cut(s)	149, 193
Bsp143I	GATC	1 cut(s)	535
Bsp1720I	GCTNAGC	1 cut(s)	306
BspACI	CCGC	1 cut(s)	311
BspANI	GGCC	3 cut(s)	471, 650, 682
BspCNI	CTCAG	2 cut(s)	135, 171
BspDI	ATCGAT	1 cut(s)	538
BspMI	ACCTGC	2 cut(s)	326, 368
BspTNI	GGTCTC	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	579
BsrFI	RCCGGY	1 cut(s)	600
BsrI	ACTGG	1 cut(s)	461
BssAI	RCCGGY	1 cut(s)	600
BssMI	GATC	1 cut(s)	535
Bst2UI	CCWGG	1 cut(s)	588
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	298
BstC8I	GCNNGC	2 cut(s)	627, 717
BstDEI	CTNAG	5 cut(s)	143, 179, 256, 306, 750
BstHHI	GCGC	2 cut(s)	97, 268
BstKTI	GATC	1 cut(s)	538
BstMAI	GTCTC	5 cut(s)	25, 220, 402, 447, 458
BstMBI	GATC	1 cut(s)	535
BstMWI	GCNNNNNNNGC	3 cut(s)	341, 583, 679
BstNI	CCWGG	1 cut(s)	588
BstSCI	CCNGG	1 cut(s)	586
BstV1I	GCAGC	2 cut(s)	250, 418
BstV2I	GAAGAC	1 cut(s)	267
BstXI	CCANNNNNNTGG	1 cut(s)	397
Bsu15I	ATCGAT	1 cut(s)	538
BsuRI	GGCC	3 cut(s)	471, 650, 682
BsuTUI	ATCGAT	1 cut(s)	538
BtsI	GCAGTG	3 cut(s)	14, 118, 551
BtsIMutI	CAGTG	3 cut(s)	14, 118, 551
BveI	ACCTGC	2 cut(s)	326, 368
Cac8I	GCNNGC	2 cut(s)	627, 717
CfoI	GCGC	2 cut(s)	97, 268
Cfr10I	RCCGGY	1 cut(s)	600
Cfr13I	GGNCC	1 cut(s)	648
ClaI	ATCGAT	1 cut(s)	538
CviAII	CATG	2 cut(s)	435, 678
DdeI	CTNAG	5 cut(s)	143, 179, 256, 306, 750
DpnI	GATC	1 cut(s)	537
DpnII	GATC	1 cut(s)	535
EaeI	YGGCCR	1 cut(s)	680
Eam1104I	CTCTTC	1 cut(s)	298
EarI	CTCTTC	1 cut(s)	298
Ecl136II	GAGCTC	1 cut(s)	147
Eco147I	AGGCCT	1 cut(s)	471
Eco24I	GRGCYC	1 cut(s)	149
Eco31I	GGTCTC	1 cut(s)	220
Eco53kI	GAGCTC	1 cut(s)	147
Eco57I	CTGAAG	2 cut(s)	335, 636
Eco88I	CYCGRG	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	586
EcoT38I	GRGCYC	1 cut(s)	149
Esp3I	CGTCTC	1 cut(s)	402
FaeI	CATG	2 cut(s)	438, 681
FatI	CATG	2 cut(s)	434, 677
Fnu4HI	GCNGC	3 cut(s)	264, 311, 432
FriOI	GRGCYC	1 cut(s)	149
Fsp4HI	GCNGC	3 cut(s)	264, 311, 432
FspBI	CTAG	1 cut(s)	162
GlaI	GCGC	2 cut(s)	96, 267
GluI	GCNGC	3 cut(s)	264, 311, 432
GsaI	CCCAGC	1 cut(s)	305
HaeIII	GGCC	3 cut(s)	471, 650, 682
HapII	CCGG	1 cut(s)	601
HhaI	GCGC	2 cut(s)	97, 268
Hin1II	CATG	2 cut(s)	438, 681
Hin6I	GCGC	2 cut(s)	95, 266
HinP1I	GCGC	2 cut(s)	95, 266
HincII	GTYRAC	1 cut(s)	354
HindII	GTYRAC	1 cut(s)	354
HindIII	AAGCTT	1 cut(s)	747
HpaII	CCGG	1 cut(s)	601
Hpy166II	GTNNAC	2 cut(s)	354, 731
Hpy188I	TCNGA	5 cut(s)	129, 144, 225, 507, 707
Hpy8I	GTNNAC	2 cut(s)	354, 731
HpyAV	CCTTC	4 cut(s)	178, 196, 310, 544
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	6 cut(s)	335, 359, 377, 434, 544, 572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	341, 583, 679
HpyF3I	CTNAG	5 cut(s)	143, 179, 256, 306, 750
HpySE526I	ACGT	1 cut(s)	411
Hsp92II	CATG	2 cut(s)	438, 681
HspAI	GCGC	2 cut(s)	95, 266
Kzo9I	GATC	1 cut(s)	535
Lsp1109I	GCAGC	2 cut(s)	250, 418
LweI	GCATC	3 cut(s)	82, 364, 660
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	411
MalI	GATC	1 cut(s)	537
MboI	GATC	1 cut(s)	535
MboII	GAAGA	2 cut(s)	267, 285
MhlI	GDGCHC	2 cut(s)	149, 193
MlsI	TGGCCA	1 cut(s)	682
MluCI	AATT	4 cut(s)	117, 130, 250, 720
MluNI	TGGCCA	1 cut(s)	682
MnlI	CCTC	4 cut(s)	81, 174, 289, 301
Mox20I	TGGCCA	1 cut(s)	682
MscI	TGGCCA	1 cut(s)	682
MseI	TTAA	2 cut(s)	635, 656
MslI	CAYNNNNRTG	1 cut(s)	111
Msp20I	TGGCCA	1 cut(s)	682
MspA1I	CMGCKG	1 cut(s)	313
MspI	CCGG	1 cut(s)	601
MspR9I	CCNGG	1 cut(s)	588
MvaI	CCWGG	1 cut(s)	588
MwoI	GCNNNNNNNGC	3 cut(s)	341, 583, 679
NdeII	GATC	1 cut(s)	535
NlaIII	CATG	2 cut(s)	438, 681
OliI	CACNNNNGTG	1 cut(s)	111
PceI	AGGCCT	1 cut(s)	471
PkrI	GCNGC	3 cut(s)	265, 312, 433
Psp124BI	GAGCTC	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	586
PspFI	CCCAGC	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	586
PspPI	GGNCC	1 cut(s)	648
RseI	CAYNNNNRTG	1 cut(s)	111
SacI	GAGCTC	1 cut(s)	149
SaqAI	TTAA	2 cut(s)	635, 656
SatI	GCNGC	3 cut(s)	264, 311, 432
Sau3AI	GATC	1 cut(s)	535
Sau96I	GGNCC	1 cut(s)	648
ScrFI	CCNGG	1 cut(s)	588
SduI	GDGCHC	2 cut(s)	149, 193
SfaNI	GCATC	3 cut(s)	82, 364, 660
SmiMI	CAYNNNNRTG	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
SpeI	ACTAGT	1 cut(s)	161
Sse9I	AATT	4 cut(s)	117, 130, 250, 720
SseBI	AGGCCT	1 cut(s)	471
SsiI	CCGC	1 cut(s)	311
SspI	AATATT	1 cut(s)	502
SspMI	CTAG	1 cut(s)	162
SstI	GAGCTC	1 cut(s)	149
StuI	AGGCCT	1 cut(s)	471
StyD4I	CCNGG	1 cut(s)	586
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	2 cut(s)	286, 538
TasI	AATT	4 cut(s)	117, 130, 250, 720
TauI	GCSGC	1 cut(s)	313
Tru1I	TTAA	2 cut(s)	635, 656
Tru9I	TTAA	2 cut(s)	635, 656
TscAI	CASTG	3 cut(s)	14, 118, 551
TseI	GCWGC	2 cut(s)	263, 431
TspDTI	ATGAA	1 cut(s)	43
TspRI	CASTG	3 cut(s)	14, 118, 551
XapI	RAATTY	2 cut(s)	130, 250
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.