Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006550.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

60355 .. 60786

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgatgacaagccccactgtagagcaggttcagaggatcactctccagctaaaatggtacggacagatcgagaacaagaacgtcttttattggttccagaatcaaagggctagggagaagctgaaaaagaagaagctcacttcggatgttcaagtgcccaagcaaagatcaaggcttgttagtggatccattaatctcaattttgggtcaactagttctgctgatgttggtggatccatcatggaacaacgaggagaagatcaccaggagattaaaatccttccattgtttcccatgcacggtgaggacatctttggcaacatgaagactacttccgatggaggtggcggtcacggtggtggctctcacatttcccttgagctcagcctttcctgcgagggcaaagttggaaaaagtttccggagccgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

143

Amino Acids

15.94

Weight (kDa)

9.63

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	3 - 40	4.2e-07	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	16
AccIII	TCCGGA	1 cut(s)	420
AciI	CCGC	2 cut(s)	348, 427
AclWI	GGATC	5 cut(s)	44, 180, 193, 228, 241
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	299
AgsI	TTSAA	1 cut(s)	152
AhlI	ACTAGT	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	264
AleI	CACNNNNGTG	1 cut(s)	357
AluBI	AGCT	4 cut(s)	49, 121, 136, 382
AluI	AGCT	4 cut(s)	49, 121, 136, 382
Alw21I	GWGCWC	1 cut(s)	384
AlwI	GGATC	5 cut(s)	44, 180, 193, 228, 241
Aor13HI	TCCGGA	1 cut(s)	420
AseI	ATTAAT	1 cut(s)	192
AsuHPI	GGTGA	2 cut(s)	254, 314
BaeGI	GKGCMC	1 cut(s)	159
BamHI	GGATCC	2 cut(s)	185, 233
BanII	GRGCYC	1 cut(s)	384
BbsI	GAAGAC	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	384
BccI	CCATC	2 cut(s)	245, 332
BciT130I	CCWGG	1 cut(s)	266
BcuI	ACTAGT	1 cut(s)	212
BfaI	CTAG	2 cut(s)	111, 213
BfmI	CTRYAG	1 cut(s)	18
BfuAI	ACCTGC	1 cut(s)	16
BisI	GCNGC	1 cut(s)	427
BlpI	GCTNAGC	1 cut(s)	383
BlsI	GCNGC	1 cut(s)	428
Bme1390I	CCNGG	1 cut(s)	266
BmiI	GGNNCC	4 cut(s)	95, 187, 235, 425
BmrFI	CCNGG	1 cut(s)	266
BpiI	GAAGAC	1 cut(s)	332
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
BpmI	CTGGAG	1 cut(s)	29
Bpu1102I	GCTNAGC	1 cut(s)	383
BpuEI	CTTGAG	1 cut(s)	398
BsaBI	GATNNNNATC	1 cut(s)	275
BsaWI	WCCGGW	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse8I	GATNNNNATC	1 cut(s)	275
BseAI	TCCGGA	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	266
BseGI	GGATG	1 cut(s)	151
BseJI	GATNNNNATC	1 cut(s)	275
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseMII	CTCAG	1 cut(s)	397
BseRI	GAGGAG	1 cut(s)	267
BseSI	GKGCMC	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	384
BsiSI	CCGG	1 cut(s)	421
BslI	CCNNNNNNNGG	1 cut(s)	299
Bsp1286I	GDGCHC	2 cut(s)	159, 384
Bsp13I	TCCGGA	1 cut(s)	420
Bsp143I	GATC	6 cut(s)	36, 66, 167, 185, 233, 259
Bsp1720I	GCTNAGC	1 cut(s)	383
BspACI	CCGC	2 cut(s)	348, 427
BspCNI	CTCAG	1 cut(s)	396
BspEI	TCCGGA	1 cut(s)	420
BspLI	GGNNCC	4 cut(s)	95, 187, 235, 425
BspMI	ACCTGC	1 cut(s)	16
BspPI	GGATC	5 cut(s)	44, 180, 193, 228, 241
BssMI	GATC	6 cut(s)	36, 66, 167, 185, 233, 259
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	3 cut(s)	19, 302, 356
BstDEI	CTNAG	1 cut(s)	383
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	6 cut(s)	39, 69, 170, 188, 236, 262
BstMBI	GATC	6 cut(s)	36, 66, 167, 185, 233, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	393
BstNI	CCWGG	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	18
BstSLI	GKGCMC	1 cut(s)	159
BstV2I	GAAGAC	1 cut(s)	332
BstX2I	RGATCY	2 cut(s)	185, 233
BstYI	RGATCY	2 cut(s)	185, 233
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	15
BveI	ACCTGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	3 cut(s)	241, 295, 322
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	1 cut(s)	383
DpnI	GATC	6 cut(s)	38, 68, 169, 187, 235, 261
DpnII	GATC	6 cut(s)	36, 66, 167, 185, 233, 259
Ecl136II	GAGCTC	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	384
Eco53kI	GAGCTC	1 cut(s)	382
EcoICRI	GAGCTC	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	384
FaeI	CATG	3 cut(s)	244, 298, 325
FaiI	YATR	3 cut(s)	242, 296, 323
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FatI	CATG	3 cut(s)	240, 294, 321
Fnu4HI	GCNGC	1 cut(s)	427
FokI	GGATG	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	1 cut(s)	427
FspBI	CTAG	2 cut(s)	111, 213
GluI	GCNGC	1 cut(s)	427
GsuI	CTGGAG	1 cut(s)	29
HapII	CCGG	1 cut(s)	421
Hin1II	CATG	3 cut(s)	244, 298, 325
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HinfI	GANTC	1 cut(s)	100
HpaII	CCGG	1 cut(s)	421
HphI	GGTGA	2 cut(s)	254, 314
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	3 cut(s)	33, 145, 337
Hpy188III	TCNNGA	3 cut(s)	70, 97, 421
Hpy8I	GTNNAC	1 cut(s)	210
HpyAV	CCTTC	1 cut(s)	290
HpyCH4III	ACNGT	3 cut(s)	19, 302, 356
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	393
HpyF3I	CTNAG	1 cut(s)	383
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	244, 298, 325
Kpn2I	TCCGGA	1 cut(s)	420
Kzo9I	GATC	6 cut(s)	36, 66, 167, 185, 233, 259
LmnI	GCTCC	1 cut(s)	423
LpnPI	CCDG	6 cut(s)	11, 59, 110, 251, 278, 406
MaeI	CTAG	2 cut(s)	111, 213
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	6 cut(s)	38, 68, 169, 187, 235, 261
MboI	GATC	6 cut(s)	36, 66, 167, 185, 233, 259
MboII	GAAGA	3 cut(s)	142, 269, 337
MflI	RGATCY	2 cut(s)	185, 233
MhlI	GDGCHC	2 cut(s)	159, 384
MluCI	AATT	1 cut(s)	199
MmeI	TCCRAC	1 cut(s)	388
MnlI	CCTC	5 cut(s)	27, 245, 298, 335, 391
MroI	TCCGGA	1 cut(s)	420
MseI	TTAA	2 cut(s)	192, 273
MslI	CAYNNNNRTG	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	429
MspI	CCGG	1 cut(s)	421
MspR9I	CCNGG	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	393
NdeII	GATC	6 cut(s)	36, 66, 167, 185, 233, 259
NlaIII	CATG	3 cut(s)	244, 298, 325
NlaIV	GGNNCC	4 cut(s)	95, 187, 235, 425
NmuCI	GTSAC	1 cut(s)	350
OliI	CACNNNNGTG	1 cut(s)	357
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	100
PkrI	GCNGC	1 cut(s)	428
PshBI	ATTAAT	1 cut(s)	192
Psp124BI	GAGCTC	1 cut(s)	384
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	4 cut(s)	95, 187, 235, 425
PsrI	GAACNNNNNNTAC	2 cut(s)	12, 44
PsuI	RGATCY	2 cut(s)	185, 233
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	357
SacI	GAGCTC	1 cut(s)	384
SaqAI	TTAA	2 cut(s)	192, 273
SatI	GCNGC	1 cut(s)	427
Sau3AI	GATC	6 cut(s)	36, 66, 167, 185, 233, 259
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	2 cut(s)	159, 384
SetI	ASST	7 cut(s)	30, 51, 84, 123, 138, 346, 384
SfcI	CTRYAG	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
SpeI	ACTAGT	1 cut(s)	212
Sse9I	AATT	1 cut(s)	199
SsiI	CCGC	2 cut(s)	348, 427
SspMI	CTAG	2 cut(s)	111, 213
SstI	GAGCTC	1 cut(s)	384
StyD4I	CCNGG	1 cut(s)	264
TaaI	ACNGT	3 cut(s)	19, 302, 356
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	1 cut(s)	69
TasI	AATT	1 cut(s)	199
TauI	GCSGC	1 cut(s)	429
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	2 cut(s)	192, 273
Tru9I	TTAA	2 cut(s)	192, 273
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	1 cut(s)	338
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	22
VspI	ATTAAT	1 cut(s)	192
XspI	CTAG	2 cut(s)	111, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.