Rmu_sc0006590.1_g000017

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006590.1
N/A
Physical Location & Seq
Reverse (-)
55493 .. 55879
387 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 387 bp
atgctaactgttgagcaagctcaagttttggaagtaaatagagtagtcttagaggcaaataaggcgaaagccatcattctaatgactcgtcatatggatgattcactccagtacgagtgtatgaatgaagaatacccaagaaggttgtgggtctcactcgaagaaagatttggtaacgtccgtggctccctgcttcctgacctagaagtgagatggcatagcctctgcttctatgatttcaagtcagttattaactataactcggaagcacttcgcattaaatccttaatggaattctgtggtaaagagatcacagatgcgatgttgattgagaagactctctctaccttccccgtctctgcattgatggttactaagaactattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

128

Amino Acids

14.96

Weight (kDa)

5.42

Isoelectric Point (pI)

53.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 293
AfaI GTAC 1 cut(s) 113
AgsI TTSAA 1 cut(s) 241
AjuI GAANNNNNNNTTGG 2 cut(s) 153, 185
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Alw26I GTCTC 2 cut(s) 157, 361
ApoI RAATTY 1 cut(s) 293
Asp700I GAANNNNTTC 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 341
BccI CCATC 3 cut(s) 80, 207, 361
BcoDI GTCTC 2 cut(s) 157, 361
BfaI CTAG 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 187
BmsI GCATC 1 cut(s) 307
BpiI GAAGAC 1 cut(s) 341
BpmI CTGGAG 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 6
BsaI GGTCTC 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 181
Bse1I ACTGG 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 181
BseGI GGATG 1 cut(s) 103
BseNI ACTGG 1 cut(s) 109
BsmAI GTCTC 2 cut(s) 157, 361
BsmBI CGTCTC 1 cut(s) 361
Bso31I GGTCTC 1 cut(s) 157
Bsp143I GATC 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 187
BspTNI GGTCTC 1 cut(s) 157
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 181
BssMI GATC 1 cut(s) 309
Bst4CI ACNGT 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 2 cut(s) 49, 375
BstDSI CCRYGG 1 cut(s) 181
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 1 cut(s) 312
BstMAI GTCTC 2 cut(s) 157, 361
BstMBI GATC 1 cut(s) 309
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 341
BtgI CCRYGG 1 cut(s) 181
BtgZI GCGATG 1 cut(s) 335
BtsCI GGATG 1 cut(s) 103
Cac8I GCNNGC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 112
CviJI RGCY 4 cut(s) 20, 71, 186, 222
CviKI_1 RGCY 4 cut(s) 20, 71, 186, 222
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 2 cut(s) 49, 375
DpnI GATC 1 cut(s) 311
DpnII GATC 1 cut(s) 309
Eco31I GGTCTC 1 cut(s) 157
EcoRI GAATTC 1 cut(s) 293
Esp3I CGTCTC 1 cut(s) 361
FaiI YATR 6 cut(s) 93, 95, 122, 219, 234, 258
FauNDI CATATG 1 cut(s) 93
FokI GGATG 1 cut(s) 110
FspBI CTAG 1 cut(s) 203
GsuI CTGGAG 1 cut(s) 92
HinfI GANTC 3 cut(s) 85, 101, 337
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 1 cut(s) 197
HpyAV CCTTC 2 cut(s) 135, 358
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 1 cut(s) 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 2 cut(s) 49, 375
HpySE526I ACGT 1 cut(s) 177
Kzo9I GATC 1 cut(s) 309
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 3 cut(s) 122, 203, 210
LweI GCATC 1 cut(s) 307
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 2 cut(s) 173, 370
MalI GATC 1 cut(s) 311
MboI GATC 1 cut(s) 309
MboII GAAGA 3 cut(s) 140, 173, 346
MluCI AATT 1 cut(s) 293
MlyI GAGTC 2 cut(s) 79, 331
MnlI CCTC 2 cut(s) 46, 233
MroXI GAANNNNTTC 1 cut(s) 270
MseI TTAA 3 cut(s) 252, 279, 287
MslI CAYNNNNRTG 2 cut(s) 80, 96
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeI CATATG 1 cut(s) 93
NdeII GATC 1 cut(s) 309
NlaIV GGNNCC 1 cut(s) 187
PdmI GAANNNNTTC 1 cut(s) 270
PfeI GAWTC 1 cut(s) 101
PleI GAGTC 2 cut(s) 79, 331
PpsI GAGTC 2 cut(s) 79, 331
PspN4I GGNNCC 1 cut(s) 187
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
RseI CAYNNNNRTG 2 cut(s) 80, 96
SaqAI TTAA 3 cut(s) 252, 279, 287
Sau3AI GATC 1 cut(s) 309
SchI GAGTC 2 cut(s) 79, 331
SetI ASST 5 cut(s) 22, 146, 180, 204, 350
SfaNI GCATC 1 cut(s) 307
SmiMI CAYNNNNRTG 2 cut(s) 80, 96
SmlI CTYRAG 1 cut(s) 21
SmoI CTYRAG 1 cut(s) 21
Sse9I AATT 1 cut(s) 293
SspMI CTAG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 180
TaqI TCGA 1 cut(s) 159
TasI AATT 1 cut(s) 293
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 3 cut(s) 252, 279, 287
Tru9I TTAA 3 cut(s) 252, 279, 287
TspDTI ATGAA 2 cut(s) 137, 141
TspGWI ACGGA 1 cut(s) 170
XapI RAATTY 1 cut(s) 293
XcmI CCANNNNNNNNNTGG 1 cut(s) 144
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.