Rmu_sc0006616.1_g000007

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006616.1
N/A
Physical Location & Seq
Forward (+)
25080 .. 25860
781 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 363 bp
atgctgtgtcgaaagagtgtctccactgatgacactggatccatgcctgtgtacttgaacgtttatgatctgacaccttataatggctacgcttattggcttggtcttggagtctaccattctggcgtacaagtccatgggattgagtatgcatttggagctcacgagtatccaacaactgggatttttgaaggggaaccaaaaaagtgtgagggatttacatttaggaaagcaattttgattgggaaaacggatgttgggcctttagaggtgagaacggtgatggaacagcttgctgagcaatatagccagagtttgaccttggcaccagaattaaaacccataaatcccaagacagactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

120

Amino Acids

13.36

Weight (kDa)

5.3

Isoelectric Point (pI)

27.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 15 - 104 2e-28 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 81
AccB1I GGYRCC 1 cut(s) 325
AccB7I CCANNNNNTGG 1 cut(s) 179
AccI GTMKAC 1 cut(s) 114
AclI AACGTT 1 cut(s) 60
AclWI GGATC 2 cut(s) 33, 46
AfaI GTAC 2 cut(s) 53, 129
AfiI CCNNNNNNNGG 2 cut(s) 83, 179
AgsI TTSAA 2 cut(s) 58, 191
AluBI AGCT 2 cut(s) 161, 292
AluI AGCT 2 cut(s) 161, 292
Alw21I GWGCWC 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 25
AlwI GGATC 2 cut(s) 33, 46
AoxI GGCC 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 2 cut(s) 283, 292
BamHI GGATCC 1 cut(s) 38
BanI GGYRCC 1 cut(s) 325
BanII GRGCYC 1 cut(s) 163
BauI CACGAG 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 163
BccI CCATC 1 cut(s) 277
BciVI GTATCC 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 25
BfuI GTATCC 1 cut(s) 180
BlpI GCTNAGC 1 cut(s) 297
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 3 cut(s) 40, 198, 327
BmrI ACTGGG 1 cut(s) 189
BmuI ACTGGG 1 cut(s) 189
Bpu1102I GCTNAGC 1 cut(s) 297
BsaJI CCNNGG 2 cut(s) 136, 321
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 179
Bse1I ACTGG 2 cut(s) 40, 184
BseDI CCNNGG 2 cut(s) 136, 321
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 2 cut(s) 83, 179
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 2 cut(s) 40, 184
BshFI GGCC 1 cut(s) 262
BshNI GGYRCC 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 163
BslI CCNNNNNNNGG 2 cut(s) 83, 179
BsmAI GTCTC 1 cut(s) 25
BsnI GGCC 1 cut(s) 262
Bsp1286I GDGCHC 1 cut(s) 163
Bsp143I GATC 2 cut(s) 38, 67
Bsp1720I GCTNAGC 1 cut(s) 297
Bsp19I CCATGG 1 cut(s) 136
BspANI GGCC 1 cut(s) 262
BspCNI CTCAG 1 cut(s) 289
BspLI GGNNCC 3 cut(s) 40, 198, 327
BspPI GGATC 2 cut(s) 33, 46
BspT107I GGYRCC 1 cut(s) 325
BsrI ACTGG 2 cut(s) 40, 184
BssECI CCNNGG 2 cut(s) 136, 321
BssMI GATC 2 cut(s) 38, 67
BssSI CACGAG 1 cut(s) 164
BssT1I CCWWGG 2 cut(s) 136, 321
Bst2BI CACGAG 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 280
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 1 cut(s) 297
BstDSI CCRYGG 1 cut(s) 136
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 2 cut(s) 41, 70
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 2 cut(s) 38, 67
BstMWI GCNNNNNNNGC 2 cut(s) 158, 298
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuI GTATCC 1 cut(s) 180
BsuRI GGCC 1 cut(s) 262
BtgI CCRYGG 1 cut(s) 136
BtsCI GGATG 1 cut(s) 259
BtsIMutI CAGTG 2 cut(s) 24, 33
Cac8I GCNNGC 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 260
Csp6I GTAC 2 cut(s) 52, 128
CviAII CATG 2 cut(s) 43, 137
CviJI RGCY 6 cut(s) 87, 100, 161, 262, 292, 309
CviKI_1 RGCY 6 cut(s) 87, 100, 161, 262, 292, 309
CviQI GTAC 2 cut(s) 52, 128
DdeI CTNAG 1 cut(s) 297
DpnI GATC 2 cut(s) 40, 69
DpnII GATC 2 cut(s) 38, 67
Ecl136II GAGCTC 1 cut(s) 161
Eco130I CCWWGG 2 cut(s) 136, 321
Eco24I GRGCYC 1 cut(s) 163
Eco53kI GAGCTC 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 161
EcoT14I CCWWGG 2 cut(s) 136, 321
EcoT22I ATGCAT 1 cut(s) 154
EcoT38I GRGCYC 1 cut(s) 163
ErhI CCWWGG 2 cut(s) 136, 321
FaeI CATG 2 cut(s) 46, 140
FaiI YATR 7 cut(s) 44, 66, 81, 138, 150, 306, 344
FatI CATG 2 cut(s) 42, 136
FblI GTMKAC 1 cut(s) 114
FokI GGATG 1 cut(s) 266
FriOI GRGCYC 1 cut(s) 163
HaeIII GGCC 1 cut(s) 262
Hin1II CATG 2 cut(s) 46, 140
HinfI GANTC 1 cut(s) 111
HphI GGTGA 2 cut(s) 283, 292
Hpy166II GTNNAC 2 cut(s) 52, 115
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 2 cut(s) 52, 115
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 298
HpyF3I CTNAG 1 cut(s) 297
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 2 cut(s) 46, 140
Kzo9I GATC 2 cut(s) 38, 67
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 6 cut(s) 21, 60, 108, 165, 323, 342
MaeII ACGT 1 cut(s) 60
MalI GATC 2 cut(s) 40, 69
MboI GATC 2 cut(s) 38, 67
MflI RGATCY 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 2 cut(s) 234, 332
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 197
MnlI CCTC 2 cut(s) 205, 262
Mph1103I ATGCAT 1 cut(s) 154
MseI TTAA 1 cut(s) 335
MslI CAYNNNNRTG 1 cut(s) 47
MwoI GCNNNNNNNGC 2 cut(s) 158, 298
NcoI CCATGG 1 cut(s) 136
NdeII GATC 2 cut(s) 38, 67
NlaIII CATG 2 cut(s) 46, 140
NlaIV GGNNCC 3 cut(s) 40, 198, 327
NsiI ATGCAT 1 cut(s) 154
PflMI CCANNNNNTGG 1 cut(s) 179
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PsiI TTATAA 1 cut(s) 81
Psp124BI GAGCTC 1 cut(s) 163
Psp1406I AACGTT 1 cut(s) 60
PspN4I GGNNCC 3 cut(s) 40, 198, 327
PspPI GGNCC 1 cut(s) 260
PsuI RGATCY 1 cut(s) 38
RsaI GTAC 2 cut(s) 53, 129
RsaNI GTAC 2 cut(s) 52, 128
RseI CAYNNNNRTG 1 cut(s) 47
SacI GAGCTC 1 cut(s) 163
SaqAI TTAA 1 cut(s) 335
Sau3AI GATC 2 cut(s) 38, 67
Sau96I GGNCC 1 cut(s) 260
SchI GAGTC 1 cut(s) 120
SduI GDGCHC 1 cut(s) 163
SetI ASST 6 cut(s) 63, 79, 163, 273, 294, 323
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 2 cut(s) 234, 332
SstI GAGCTC 1 cut(s) 163
StyI CCWWGG 2 cut(s) 136, 321
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 1 cut(s) 63
TaqI TCGA 1 cut(s) 10
TasI AATT 2 cut(s) 234, 332
TatI WGTACW 1 cut(s) 51
Tru1I TTAA 1 cut(s) 335
Tru9I TTAA 1 cut(s) 335
TscAI CASTG 2 cut(s) 31, 40
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 2 cut(s) 31, 40
Van91I CCANNNNNTGG 1 cut(s) 179
XmiI GTMKAC 1 cut(s) 114
Zsp2I ATGCAT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.