Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006619.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

55428 .. 55844

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006619.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ctgcccctctctctctctttggaggaggcagctctcgcctacgacgatgccgccaggtctctccgttgcaacaaggccaagaccaattttccggtgccattgacgagaggaaatctctcccttgacctcaacgtgtcctttgccgagtgggcctcccactatggctgtctagttgagtttctccacaccggcgtcttgaacgagggagactcagtggccttcatagcccaacaatgctcaattctccgaagatcatctcccagatttcttccctgcaacatcactccagaaccaagcctaaaaaaaaataccgctgcaaaatccgaaaaccccccaaatccaaactcaagaggaatggggcaaaataccagtccagaaccacagcagccgaccacaattctccggaagtcgcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

138

Amino Acids

15.06

Weight (kDa)

8.45

Isoelectric Point (pI)

63.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	94
AccIII	TCCGGA	1 cut(s)	402
AciI	CCGC	2 cut(s)	51, 312
AcyI	GRCGYC	1 cut(s)	192
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	53
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
Alw26I	GTCTC	2 cut(s)	63, 201
Aor13HI	TCCGGA	1 cut(s)	402
AoxI	GGCC	3 cut(s)	75, 150, 216
ApeKI	GCWGC	3 cut(s)	29, 314, 385
ArsI	GACNNNNNNTTYG	2 cut(s)	355, 387
AspS9I	GGNCC	1 cut(s)	150
BanI	GGYRCC	1 cut(s)	94
BbvI	GCAGC	3 cut(s)	41, 301, 397
BciT130I	CCWGG	1 cut(s)	55
BcoDI	GTCTC	2 cut(s)	63, 201
BfaI	CTAG	1 cut(s)	170
BglI	GCCNNNNNGGC	1 cut(s)	149
BisI	GCNGC	4 cut(s)	30, 51, 315, 386
BlsI	GCNGC	4 cut(s)	31, 52, 316, 387
Bme1390I	CCNGG	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	55
BmsI	GCATC	1 cut(s)	37
BplI	GAGNNNNNCTC	6 cut(s)	99, 131, 137, 169, 194, 226
BpmI	CTGGAG	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	331
BsaHI	GRCGYC	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	63
BsaWI	WCCGGW	2 cut(s)	91, 402
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	369
BseAI	TCCGGA	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	369
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	3 cut(s)	41, 301, 397
BshFI	GGCC	3 cut(s)	77, 152, 218
BshNI	GGYRCC	1 cut(s)	94
BsiSI	CCGG	3 cut(s)	92, 189, 403
BsmAI	GTCTC	2 cut(s)	63, 201
BsnI	GGCC	3 cut(s)	77, 152, 218
Bso31I	GGTCTC	1 cut(s)	63
Bsp13I	TCCGGA	1 cut(s)	402
Bsp143I	GATC	1 cut(s)	251
BspACI	CCGC	2 cut(s)	51, 312
BspANI	GGCC	3 cut(s)	77, 152, 218
BspCNI	CTCAG	1 cut(s)	224
BspEI	TCCGGA	1 cut(s)	402
BspLI	GGNNCC	1 cut(s)	96
BspT107I	GGYRCC	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	63
BsrFI	RCCGGY	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	369
BssAI	RCCGGY	1 cut(s)	188
BssMI	GATC	1 cut(s)	251
BssNI	GRCGYC	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	55
BstACI	GRCGYC	1 cut(s)	192
BstDEI	CTNAG	1 cut(s)	211
BstKTI	GATC	1 cut(s)	254
BstMAI	GTCTC	2 cut(s)	63, 201
BstMBI	GATC	1 cut(s)	251
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 149, 224
BstNI	CCWGG	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	53
BstV1I	GCAGC	3 cut(s)	41, 301, 397
BsuRI	GGCC	3 cut(s)	77, 152, 218
BtsIMutI	CAGTG	1 cut(s)	219
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	150
CseI	GACGC	1 cut(s)	181
CviJI	RGCY	8 cut(s)	32, 77, 152, 165, 218, 227, 297, 388
CviKI_1	RGCY	8 cut(s)	32, 77, 152, 165, 218, 227, 297, 388
DdeI	CTNAG	1 cut(s)	211
DpnI	GATC	1 cut(s)	253
DpnII	GATC	1 cut(s)	251
Eco31I	GGTCTC	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	53
FaiI	YATR	2 cut(s)	162, 224
Fnu4HI	GCNGC	4 cut(s)	30, 51, 315, 386
Fsp4HI	GCNGC	4 cut(s)	30, 51, 315, 386
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	4 cut(s)	30, 51, 315, 386
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	3 cut(s)	77, 152, 218
HapII	CCGG	3 cut(s)	92, 189, 403
HgaI	GACGC	1 cut(s)	181
Hin1I	GRCGYC	1 cut(s)	192
HinfI	GANTC	1 cut(s)	209
HpaII	CCGG	3 cut(s)	92, 189, 403
Hpy188I	TCNGA	2 cut(s)	248, 325
Hpy188III	TCNNGA	5 cut(s)	196, 287, 348, 374, 403
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	3 cut(s)	69, 276, 317
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 149, 224
HpyF3I	CTNAG	1 cut(s)	211
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	192
Kpn2I	TCCGGA	1 cut(s)	402
Kzo9I	GATC	1 cut(s)	251
LpnPI	CCDG	9 cut(s)	40, 67, 105, 202, 274, 286, 300, 382, 387
Lsp1109I	GCAGC	3 cut(s)	41, 301, 397
LweI	GCATC	1 cut(s)	37
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	1 cut(s)	132
MalI	GATC	1 cut(s)	253
MboI	GATC	1 cut(s)	251
MboII	GAAGA	2 cut(s)	260, 261
MluCI	AATT	3 cut(s)	85, 240, 396
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	8 cut(s)	16, 17, 19, 101, 137, 163, 196, 344
MroI	TCCGGA	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	3 cut(s)	92, 189, 403
MspR9I	CCNGG	1 cut(s)	55
MvaI	CCWGG	1 cut(s)	55
MwoI	GCNNNNNNNGC	3 cut(s)	35, 149, 224
NdeII	GATC	1 cut(s)	251
NlaIV	GGNNCC	1 cut(s)	96
NmeAIII	GCCGAG	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PkrI	GCNGC	4 cut(s)	31, 52, 316, 387
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	150
SatI	GCNGC	4 cut(s)	30, 51, 315, 386
Sau3AI	GATC	1 cut(s)	251
Sau96I	GGNCC	1 cut(s)	150
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	1 cut(s)	55
SetI	ASST	4 cut(s)	34, 59, 129, 135
SfaNI	GCATC	1 cut(s)	37
SgrAI	CRCCGGYG	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse9I	AATT	3 cut(s)	85, 240, 396
SsiI	CCGC	2 cut(s)	51, 312
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	53
TaiI	ACGT	1 cut(s)	135
TasI	AATT	3 cut(s)	85, 240, 396
TauI	GCSGC	1 cut(s)	53
TscAI	CASTG	1 cut(s)	219
TseI	GCWGC	3 cut(s)	29, 314, 385
TspDTI	ATGAA	1 cut(s)	211
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	1 cut(s)	219
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.