Rmu_sc0006632.1_g000008

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006632.1
N/A
Physical Location & Seq
Forward (+)
23524 .. 25755
2232 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 633 bp
atggagaagctggttaatggtttgccgggtgtgagggggaagcactttgaggacgatggagtgttgcctaagaaactgaggcttaatctggcagtggataggagtaggactaatgttgacgttgtgtctgtgggtttggctataattaaccttcacaagatgctccaaaacagagagggaggccaagagaaagatcaaaaagaggccgtcacgagaagtcgtcgacgagccttgatgatgtctgctgctgccttgcaaatccaaactctggaagatgaggattcacaatgggctcaatacttcaaggatccgtgcaggtatgaaccaaacatattttgcaggcgatatagaatgcaaccttgggtctttgacaagatgatgcgcgacgtggctaactacgacccatattttgttcaaacaagagatgcttgtgggagactcagcttatccactgaacaaaagctgacatgcgccatgagaatgctcgcgtatagcatcacagctgatttctgtgatgattacctagatattgcgaagaccactgccattgagatttttgagcacttcacaaaagcaatttggaatgtgtaccataagacttacctctgccgaccaacaccggcagatttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

210

Amino Acids

24.43

Weight (kDa)

8.48

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 306
AccB7I CCANNNNNTGG 1 cut(s) 268
AccI GTMKAC 1 cut(s) 223
AccII CGCG 2 cut(s) 384, 488
AclWI GGATC 2 cut(s) 302, 315
AfaI GTAC 1 cut(s) 590
AfiI CCNNNNNNNGG 1 cut(s) 268
AgsI TTSAA 2 cut(s) 304, 416
AhdI GACNNNNNGTC 1 cut(s) 124
AjiI CACGTC 1 cut(s) 388
AjuI GAANNNNNNNTTGG 2 cut(s) 343, 375
AluBI AGCT 4 cut(s) 10, 444, 463, 503
AluI AGCT 4 cut(s) 10, 444, 463, 503
Alw21I GWGCWC 1 cut(s) 564
Alw26I GTCTC 1 cut(s) 430
AlwI GGATC 2 cut(s) 302, 315
AoxI GGCC 2 cut(s) 181, 204
ApeKI GCWGC 2 cut(s) 245, 248
ArsI GACNNNNNNTTYG 2 cut(s) 392, 424
AspLEI GCGC 2 cut(s) 384, 473
AsuC2I CCSGG 1 cut(s) 27
BamHI GGATCC 1 cut(s) 307
BanII GRGCYC 1 cut(s) 295
BauI CACGAG 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 542
Bbv12I GWGCWC 1 cut(s) 564
BbvI GCAGC 2 cut(s) 232, 235
BccI CCATC 1 cut(s) 50
BceAI ACGGC 1 cut(s) 191
BcnI CCSGG 1 cut(s) 27
BcoDI GTCTC 1 cut(s) 430
BfaI CTAG 1 cut(s) 524
BfuAI ACCTGC 1 cut(s) 306
BisI GCNGC 2 cut(s) 246, 249
BlsI GCNGC 2 cut(s) 247, 250
Bme1390I CCNGG 1 cut(s) 27
BmeRI GACNNNNNGTC 1 cut(s) 124
BmgBI CACGTC 1 cut(s) 388
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 1 cut(s) 27
BmsI GCATC 4 cut(s) 150, 369, 415, 504
BpiI GAAGAC 1 cut(s) 542
BpuMI CCSGG 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 359
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse118I RCCGGY 1 cut(s) 619
BseDI CCNNGG 1 cut(s) 359
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMII CTCAG 2 cut(s) 68, 454
BseXI GCAGC 2 cut(s) 232, 235
BsgI GTGCAG 1 cut(s) 334
Bsh1236I CGCG 2 cut(s) 384, 488
BshFI GGCC 2 cut(s) 183, 206
BsiHKAI GWGCWC 1 cut(s) 564
BsiSI CCGG 2 cut(s) 26, 620
BslI CCNNNNNNNGG 1 cut(s) 268
BsmAI GTCTC 1 cut(s) 430
BsmI GAATGC 2 cut(s) 357, 486
BsnI GGCC 2 cut(s) 183, 206
Bsp1286I GDGCHC 2 cut(s) 295, 564
Bsp143I GATC 2 cut(s) 193, 307
BspANI GGCC 2 cut(s) 183, 206
BspCNI CTCAG 2 cut(s) 69, 453
BspFNI CGCG 2 cut(s) 384, 488
BspLI GGNNCC 1 cut(s) 309
BspMI ACCTGC 1 cut(s) 306
BspPI GGATC 2 cut(s) 302, 315
BsrFI RCCGGY 1 cut(s) 619
BssAI RCCGGY 1 cut(s) 619
BssECI CCNNGG 1 cut(s) 359
BssMI GATC 2 cut(s) 193, 307
BssSI CACGAG 1 cut(s) 211
BssT1I CCWWGG 1 cut(s) 359
Bst2BI CACGAG 1 cut(s) 211
BstC8I GCNNGC 2 cut(s) 341, 486
BstDEI CTNAG 3 cut(s) 69, 77, 440
BstFNI CGCG 2 cut(s) 384, 488
BstHHI GCGC 2 cut(s) 384, 473
BstKTI GATC 2 cut(s) 196, 310
BstMAI GTCTC 1 cut(s) 430
BstMBI GATC 2 cut(s) 193, 307
BstNSI RCATGY 1 cut(s) 471
BstSCI CCNGG 1 cut(s) 25
BstUI CGCG 2 cut(s) 384, 488
BstV1I GCAGC 2 cut(s) 232, 235
BstV2I GAAGAC 1 cut(s) 542
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
BsuRI GGCC 2 cut(s) 183, 206
BtrI CACGTC 1 cut(s) 388
BtsI GCAGTG 2 cut(s) 99, 540
BtsIMutI CAGTG 3 cut(s) 99, 450, 540
BveI ACCTGC 1 cut(s) 306
Cac8I GCNNGC 2 cut(s) 341, 486
CfoI GCGC 2 cut(s) 384, 473
Cfr10I RCCGGY 1 cut(s) 619
Csp6I GTAC 1 cut(s) 589
CspCI CAANNNNNGTGG 2 cut(s) 529, 564
CviAII CATG 2 cut(s) 468, 475
CviQI GTAC 1 cut(s) 589
DdeI CTNAG 3 cut(s) 69, 77, 440
DpnI GATC 2 cut(s) 195, 309
DpnII GATC 2 cut(s) 193, 307
DriI GACNNNNNGTC 1 cut(s) 124
Eam1105I GACNNNNNGTC 1 cut(s) 124
Eco130I CCWWGG 1 cut(s) 359
Eco24I GRGCYC 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 359
EcoT38I GRGCYC 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 359
FaeI CATG 2 cut(s) 471, 478
FaiI YATR 9 cut(s) 143, 321, 332, 348, 406, 469, 476, 492, 594
FalI AAGNNNNNCTT 2 cut(s) 412, 444
FatI CATG 2 cut(s) 467, 474
FblI GTMKAC 1 cut(s) 223
Fnu4HI GCNGC 2 cut(s) 246, 249
FriOI GRGCYC 1 cut(s) 295
Fsp4HI GCNGC 2 cut(s) 246, 249
FspBI CTAG 1 cut(s) 524
GlaI GCGC 2 cut(s) 383, 472
GluI GCNGC 2 cut(s) 246, 249
HaeIII GGCC 2 cut(s) 183, 206
HapII CCGG 2 cut(s) 26, 620
HhaI GCGC 2 cut(s) 384, 473
Hin1II CATG 2 cut(s) 471, 478
Hin6I GCGC 2 cut(s) 382, 471
HinP1I GCGC 2 cut(s) 382, 471
HincII GTYRAC 2 cut(s) 118, 224
HindII GTYRAC 2 cut(s) 118, 224
HinfI GANTC 2 cut(s) 281, 438
HpaII CCGG 2 cut(s) 26, 620
Hpy166II GTNNAC 3 cut(s) 118, 224, 589
Hpy188III TCNNGA 2 cut(s) 211, 269
Hpy8I GTNNAC 3 cut(s) 118, 224, 589
Hpy99I CGWCG 3 cut(s) 225, 228, 389
HpyAV CCTTC 1 cut(s) 161
HpyCH4IV ACGT 2 cut(s) 120, 387
HpyCH4V TGCA 4 cut(s) 256, 315, 339, 355
HpyF3I CTNAG 3 cut(s) 69, 77, 440
HpySE526I ACGT 2 cut(s) 120, 387
Hsp92II CATG 2 cut(s) 471, 478
HspAI GCGC 2 cut(s) 382, 471
Kzo9I GATC 2 cut(s) 193, 307
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 5 cut(s) 39, 74, 254, 301, 325
Lsp1109I GCAGC 2 cut(s) 232, 235
LweI GCATC 4 cut(s) 150, 369, 415, 504
MaeI CTAG 1 cut(s) 524
MaeII ACGT 2 cut(s) 120, 387
MaeIII GTNAC 1 cut(s) 208
MalI GATC 2 cut(s) 195, 309
MboI GATC 2 cut(s) 193, 307
MboII GAAGA 2 cut(s) 284, 547
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 2 cut(s) 295, 564
MluCI AATT 2 cut(s) 144, 576
MlyI GAGTC 1 cut(s) 432
MnlI CCTC 8 cut(s) 27, 43, 72, 169, 173, 196, 271, 614
MseI TTAA 3 cut(s) 15, 84, 147
MslI CAYNNNNRTG 1 cut(s) 479
MspA1I CMGCKG 1 cut(s) 503
MspI CCGG 2 cut(s) 26, 620
MspR9I CCNGG 1 cut(s) 27
Mva1269I GAATGC 2 cut(s) 357, 486
MvnI CGCG 2 cut(s) 384, 488
NciI CCSGG 1 cut(s) 27
NdeII GATC 2 cut(s) 193, 307
NlaIII CATG 2 cut(s) 471, 478
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 1 cut(s) 208
NspI RCATGY 1 cut(s) 471
PctI GAATGC 2 cut(s) 357, 486
PfeI GAWTC 1 cut(s) 281
PflMI CCANNNNNTGG 1 cut(s) 268
PkrI GCNGC 2 cut(s) 247, 250
PleI GAGTC 1 cut(s) 432
PpsI GAGTC 1 cut(s) 432
PspN4I GGNNCC 1 cut(s) 309
PsuI RGATCY 1 cut(s) 307
PvuII CAGCTG 1 cut(s) 503
RsaI GTAC 1 cut(s) 590
RsaNI GTAC 1 cut(s) 589
RseI CAYNNNNRTG 1 cut(s) 479
SalI GTCGAC 1 cut(s) 222
SaqAI TTAA 3 cut(s) 15, 84, 147
SatI GCNGC 2 cut(s) 246, 249
Sau3AI GATC 2 cut(s) 193, 307
SchI GAGTC 1 cut(s) 432
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 2 cut(s) 295, 564
SfaNI GCATC 4 cut(s) 150, 369, 415, 504
SgrDI CGTCGACG 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 479
Sse9I AATT 2 cut(s) 144, 576
SspMI CTAG 1 cut(s) 524
StyD4I CCNGG 1 cut(s) 25
StyI CCWWGG 1 cut(s) 359
TaiI ACGT 2 cut(s) 123, 390
TaqI TCGA 1 cut(s) 223
TasI AATT 2 cut(s) 144, 576
TfiI GAWTC 1 cut(s) 281
Tru1I TTAA 3 cut(s) 15, 84, 147
Tru9I TTAA 3 cut(s) 15, 84, 147
TscAI CASTG 3 cut(s) 99, 457, 547
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 2 cut(s) 245, 248
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 1 cut(s) 336
TspGWI ACGGA 1 cut(s) 300
TspRI CASTG 3 cut(s) 99, 457, 547
Van91I CCANNNNNTGG 1 cut(s) 268
XceI RCATGY 1 cut(s) 471
XmiI GTMKAC 1 cut(s) 223
XspI CTAG 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.