Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006638.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

29569 .. 31120

Gene Structure 1552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atggcgtatttccacaacgatgacctcgagtacgtcgtcaactactgctacgacaacgtcgttgagttcaggggcggatccagccacaggcttggtagggctcaactccgccgtctcttactctctccgtccccgcctatccggtctcccgtctccgaggtccaatgcttggcttccctcaaagacgacttggaatggaagctcatatatgttggatctgctgaagatgagacttatgaccaacttttggagagtgtgcttgttggtcctgtcaatgttggcaactaccgttttgtatttcaggctgaccagccagacccgtcaaaaatacgtgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000724 GO:0000725 GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008361 GO:0009292 GO:0009294 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0022402 GO:0030154 GO:0031567 GO:0032502 GO:0032535 GO:0032989 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044764 GO:0045786 GO:0045930 GO:0046483 GO:0048468 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051704 GO:0051716 GO:0051726 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0090304 GO:0090558 GO:0090626 GO:1901360 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASF1_hist_chap

Protein Analysis

112

Amino Acids

12.8

Weight (kDa)

4.79

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ASF1_hist_chap	PF04729	54 - 111	2.8e-22	ASF1 like histone chaperone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	169, 247
AciI	CCGC	3 cut(s)	75, 109, 134
AclWI	GGATC	3 cut(s)	72, 85, 223
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	3 cut(s)	87, 169, 247
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
Alw26I	GTCTC	4 cut(s)	119, 150, 157, 224
AlwI	GGATC	3 cut(s)	72, 85, 223
Ama87I	CYCGRG	1 cut(s)	26
AspS9I	GGNCC	2 cut(s)	160, 266
AvaI	CYCGRG	1 cut(s)	26
AvaII	GGWCC	2 cut(s)	160, 266
BamHI	GGATCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	103
BceAI	ACGGC	1 cut(s)	96
BcoDI	GTCTC	4 cut(s)	119, 150, 157, 224
Bme18I	GGWCC	2 cut(s)	160, 266
BmeT110I	CYCGRG	1 cut(s)	26
BmgT120I	GGNCC	2 cut(s)	160, 266
BmiI	GGNNCC	1 cut(s)	79
BsaAI	YACGTR	1 cut(s)	332
BsaI	GGTCTC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	156
BsaWI	WCCGGW	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 169, 247
BseDI	CCNNGG	1 cut(s)	156
BseLI	CCNNNNNNNGG	3 cut(s)	87, 169, 247
BsiHKCI	CYCGRG	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	142
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	3 cut(s)	87, 169, 247
BsmAI	GTCTC	4 cut(s)	119, 150, 157, 224
BsmBI	CGTCTC	2 cut(s)	119, 157
BsmFI	GGGAC	1 cut(s)	115
Bso31I	GGTCTC	1 cut(s)	150
BsoBI	CYCGRG	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	2 cut(s)	77, 215
BspACI	CCGC	3 cut(s)	75, 109, 134
BspLI	GGNNCC	1 cut(s)	79
BspPI	GGATC	3 cut(s)	72, 85, 223
BspTNI	GGTCTC	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	2 cut(s)	77, 215
Bst4CI	ACNGT	1 cut(s)	290
BstBAI	YACGTR	1 cut(s)	332
BstKTI	GATC	2 cut(s)	80, 218
BstMAI	GTCTC	4 cut(s)	119, 150, 157, 224
BstMBI	GATC	2 cut(s)	77, 215
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstX2I	RGATCY	2 cut(s)	77, 215
BstXI	CCANNNNNNTGG	1 cut(s)	92
BstYI	RGATCY	2 cut(s)	77, 215
Cfr13I	GGNCC	2 cut(s)	160, 266
Csp6I	GTAC	1 cut(s)	31
CviJI	RGCY	7 cut(s)	84, 91, 101, 173, 202, 305, 313
CviKI_1	RGCY	7 cut(s)	84, 91, 101, 173, 202, 305, 313
CviQI	GTAC	1 cut(s)	31
DpnI	GATC	2 cut(s)	79, 217
DpnII	GATC	2 cut(s)	77, 215
EciI	GGCGGA	2 cut(s)	90, 98
Eco24I	GRGCYC	1 cut(s)	103
Eco31I	GGTCTC	1 cut(s)	150
Eco47I	GGWCC	2 cut(s)	160, 266
Eco57I	CTGAAG	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	26
EcoT38I	GRGCYC	1 cut(s)	103
Esp3I	CGTCTC	2 cut(s)	119, 157
FaiI	YATR	4 cut(s)	206, 208, 210, 237
FaqI	GGGAC	1 cut(s)	115
FauI	CCCGC	1 cut(s)	141
FriOI	GRGCYC	1 cut(s)	103
HapII	CCGG	1 cut(s)	142
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HpaII	CCGG	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	157
Hpy8I	GTNNAC	1 cut(s)	40
Hpy99I	CGWCG	2 cut(s)	38, 62
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	3 cut(s)	33, 57, 331
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpySE526I	ACGT	3 cut(s)	33, 57, 331
Kzo9I	GATC	2 cut(s)	77, 215
LpnPI	CCDG	8 cut(s)	55, 73, 94, 155, 282, 287, 323, 327
MaeII	ACGT	3 cut(s)	33, 57, 331
MalI	GATC	2 cut(s)	79, 217
MboI	GATC	2 cut(s)	77, 215
MboII	GAAGA	1 cut(s)	236
MflI	RGATCY	2 cut(s)	77, 215
MhlI	GDGCHC	1 cut(s)	103
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	3 cut(s)	35, 151, 188
MseI	TTAA	1 cut(s)	337
MslI	CAYNNNNRTG	1 cut(s)	18
MspI	CCGG	1 cut(s)	142
MwoI	GCNNNNNNNGC	1 cut(s)	81
NdeII	GATC	2 cut(s)	77, 215
NlaIV	GGNNCC	1 cut(s)	79
PaeR7I	CTCGAG	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	3 cut(s)	24, 33, 57
PflFI	GACNNNGTC	1 cut(s)	56
PflMI	CCANNNNNTGG	2 cut(s)	169, 247
Ppu21I	YACGTR	1 cut(s)	332
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	2 cut(s)	160, 266
PspXI	VCTCGAGB	1 cut(s)	26
PsuI	RGATCY	2 cut(s)	77, 215
PsyI	GACNNNGTC	1 cut(s)	56
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	337
Sau3AI	GATC	2 cut(s)	77, 215
Sau96I	GGNCC	2 cut(s)	160, 266
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	6 cut(s)	27, 36, 60, 162, 204, 334
Sfr274I	CTCGAG	1 cut(s)	26
SinI	GGWCC	2 cut(s)	160, 266
SlaI	CTCGAG	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
SsiI	CCGC	3 cut(s)	75, 109, 134
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	3 cut(s)	36, 60, 334
TaqI	TCGA	1 cut(s)	27
Tru1I	TTAA	1 cut(s)	337
Tru9I	TTAA	1 cut(s)	337
TspGWI	ACGGA	1 cut(s)	117
Tth111I	GACNNNGTC	1 cut(s)	56
Van91I	CCANNNNNTGG	2 cut(s)	169, 247
VpaK11BI	GGWCC	2 cut(s)	160, 266
XhoI	CTCGAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.