Rmu_sc0006650.1_g000004

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006650.1
N/A
Physical Location & Seq
Forward (+)
24624 .. 25275
652 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 357 bp
atgctcataaattttattgttttcatgaatgagtatctcaatgaggaagaccctagaaaactatgggtagaactcgagaagcgatttggcaacgttcgtgactccctgcttcctgatttagaattgagatggcatagcctccgcttctgtgattttaagtttgtacttgactacaactcggaagccctttgtatcaagtctttaatggaattctgtggacagaacatcattgatacgatgttgatcaagaagactctctctaccttccccgtcttgtcattgacgattgcaaaaaattatcggattgatgccaatgctgtacgatcacaagatttcatgagcttattggagccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

118

Amino Acids

13.97

Weight (kDa)

5.14

Isoelectric Point (pI)

43.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 142
AclI AACGTT 1 cut(s) 93
AcsI RAATTY 2 cut(s) 10, 209
AfaI GTAC 2 cut(s) 165, 321
AluBI AGCT 1 cut(s) 342
AluI AGCT 1 cut(s) 342
Ama87I CYCGRG 1 cut(s) 74
ApoI RAATTY 2 cut(s) 10, 209
AvaI CYCGRG 1 cut(s) 74
BbsI GAAGAC 2 cut(s) 54, 257
BccI CCATC 1 cut(s) 123
BclI TGATCA 1 cut(s) 243
BfaI CTAG 1 cut(s) 54
BmeT110I CYCGRG 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 351
BmsI GCATC 1 cut(s) 298
BpiI GAAGAC 2 cut(s) 54, 257
BsaBI GATNNNNATC 1 cut(s) 242
Bse8I GATNNNNATC 1 cut(s) 242
BseJI GATNNNNATC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 74
Bsp143I GATC 2 cut(s) 243, 323
BspACI CCGC 1 cut(s) 142
BspHI TCATGA 2 cut(s) 24, 336
BspLI GGNNCC 1 cut(s) 351
BssMI GATC 2 cut(s) 243, 323
BstKTI GATC 2 cut(s) 246, 326
BstMBI GATC 2 cut(s) 243, 323
BstV2I GAAGAC 2 cut(s) 54, 257
CciI TCATGA 2 cut(s) 24, 336
Csp6I GTAC 2 cut(s) 164, 320
CviAII CATG 3 cut(s) 25, 337, 354
CviJI RGCY 4 cut(s) 138, 185, 342, 352
CviKI_1 RGCY 4 cut(s) 138, 185, 342, 352
CviQI GTAC 2 cut(s) 164, 320
DpnI GATC 2 cut(s) 245, 325
DpnII GATC 2 cut(s) 243, 323
Eco88I CYCGRG 1 cut(s) 74
EcoRI GAATTC 1 cut(s) 209
FaeI CATG 3 cut(s) 28, 340, 357
FaiI YATR 6 cut(s) 8, 26, 64, 135, 338, 355
FatI CATG 3 cut(s) 24, 336, 353
FbaI TGATCA 1 cut(s) 243
FspBI CTAG 1 cut(s) 54
Hin1II CATG 3 cut(s) 28, 340, 357
HinfI GANTC 2 cut(s) 101, 253
Hpy166II GTNNAC 1 cut(s) 218
Hpy188I TCNGA 2 cut(s) 181, 303
Hpy188III TCNNGA 6 cut(s) 25, 76, 98, 113, 247, 337
Hpy8I GTNNAC 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 274
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 1 cut(s) 290
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 3 cut(s) 28, 340, 357
Ksp22I TGATCA 1 cut(s) 243
Kzo9I GATC 2 cut(s) 243, 323
LmnI GCTCC 1 cut(s) 349
LpnPI CCDG 2 cut(s) 119, 126
LweI GCATC 1 cut(s) 298
MaeI CTAG 1 cut(s) 54
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 98
MalI GATC 2 cut(s) 245, 325
MboI GATC 2 cut(s) 243, 323
MboII GAAGA 2 cut(s) 59, 262
MluCI AATT 4 cut(s) 10, 122, 209, 295
MlyI GAGTC 2 cut(s) 95, 247
MnlI CCTC 2 cut(s) 37, 149
MseI TTAA 2 cut(s) 156, 203
NdeII GATC 2 cut(s) 243, 323
NlaIII CATG 3 cut(s) 28, 340, 357
NlaIV GGNNCC 1 cut(s) 351
NmuCI GTSAC 1 cut(s) 98
PaeR7I CTCGAG 1 cut(s) 74
PagI TCATGA 2 cut(s) 24, 336
PleI GAGTC 2 cut(s) 95, 247
PpsI GAGTC 2 cut(s) 95, 247
Psp1406I AACGTT 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 351
RsaI GTAC 2 cut(s) 165, 321
RsaNI GTAC 2 cut(s) 164, 320
SaqAI TTAA 2 cut(s) 156, 203
Sau3AI GATC 2 cut(s) 243, 323
SchI GAGTC 2 cut(s) 95, 247
SetI ASST 3 cut(s) 96, 266, 344
SfaNI GCATC 1 cut(s) 298
Sfr274I CTCGAG 1 cut(s) 74
SlaI CTCGAG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 4 cut(s) 10, 122, 209, 295
SsiI CCGC 1 cut(s) 142
SspMI CTAG 1 cut(s) 54
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 75
TasI AATT 4 cut(s) 10, 122, 209, 295
TatI WGTACW 1 cut(s) 163
Tru1I TTAA 2 cut(s) 156, 203
Tru9I TTAA 2 cut(s) 156, 203
TseFI GTSAC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 3 cut(s) 13, 41, 325
XapI RAATTY 2 cut(s) 10, 209
XhoI CTCGAG 1 cut(s) 74
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.